TCONS_00057071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057071
Unique NameTCONS_00057071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057071 ID=TCONS_00057071|Name=TCONS_00057071|organism=Clytia hemisphaerica|type=transcript|length=655bp
GACGCTTGCGAAAAATGGTTTGCAAAGCTACGTGGTTTTGTTCGTGGAAA
GCCAAATTTGACTTTACTTGACATGTTGGATTTTTCAAAACGTTTGCAGA
GATTAGCTGAATTGGAAAAGCTGAAGACAGACACGTCGCCATCGTTAAAA
CTGAACGATCTAAAATGCGTAAAAAGCGAGATCGAAAAGGGAATGAAGGA
TGCAGAGGAAGAGTGTATCGAGCTGTTGTTGGAGCTTAAAATGGATGATG
ACCTcgaaaaagGTAATGTTATATCCAAAACAACAAGTGGAATCTTGATC
AAGAACATCGATTTTCGTGGCTGGAGTGAAAATTGGGAGTCCTCTACTGG
TGCGATCAACGAAGACGATATTATTGACCTTGAATCAATGACCGAGTCCG
AGAAAGATGCTCTGGATGAAGCCATTGAAGCGTGTGAAGTTGAAAAAACC
ATTGTGGATGTCGAGGGTGTATTGCCTTCCATCCTTGTTCAACAAGAGAA
CACTACTAGCACAGTTGATCTAGATAAGTGTGGTTCCCATCTTCTCGGCA
AATGCGAGGAAAATGACGAAATGATATGCTGTGAGATATGTGAGCAATGG
TACCACTTACTTTGTGCGGGGCTTAAGTTCAAGAACAAATCTGAAAAGCA
AAGGT
Run BLAST on NCBI

protein sequence of TCONS_00057071-protein

>TCONS_00057071-protein ID=TCONS_00057071-protein|Name=TCONS_00057071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
DACEKWFAKLRGFVRGKPNLTLLDMLDFSKRLQRLAELEKLKTDTSPSLK
LNDLKCVKSEIEKGMKDAEEECIELLLELKMDDDLEKGNVISKTTSGILI
KNIDFRGWSENWESSTGAINEDDIIDLESMTESEKDALDEAIEACEVEKT
IVDVEGVLPSILVQQENTTSTVDLDKCGSHLLGKCEENDEMICCEICEQW
YHLLCAGLKFKNKSEKQR
Run BLAST on NCBI

transcript from alignment at scaffold_285:407338..408424+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057071 ID=TCONS_00057071|Name=TCONS_00057071|organism=Clytia hemisphaerica|type=transcript|length=1087bp|location=Sequence derived from alignment at scaffold_285:407338..408424+ (Clytia hemisphaerica)
GACGCTTGCGAAAAATGGTTTGCAAAGCTACGTGGTTTTGTTCGTGGAAA
GCCAAATTTGACTTTACTTGACATGTTGGATTTTTCAAAACGGTTAGATT
GGTTTTCAATTAATATGTGAATTAAGGTTTCTTTATATTTATTATAATTC
GTTACACTAAATGCAATACCTTCTGTTATCGATATTCCCACTCAGTTGTA
GTACcggaaaaggaagaagaaattGTGACTGGGGTTTAATTTAGTTGGCG
ACTGAAAATGTTTCCAGAGGAAATTTAATTTTGCTGATTgttagaaaatt
aaatttggtgggGATTTACAGGATATTTCTAGCCAAAAATCGTTACTAAA
TCCGCGAATTTTTTCACACCAAAATGTTTTCCTTAGGTTATACTAATCTG
GATCATTTTAACTCTTATTTCAGTTTGCAGAGATTAGCTGAATTGGAAAA
GCTGAAGACAGACACGTCGCCATCGTTAAAACTGAACGATCTAAAATGCG
TAAAAAGCGAGATCGAAAAGGGAATGAAGGATGCAGAGGAAGAGTGTATC
GAGCTGTTGTTGGAGCTTAAAATGGATGATGACCTcgaaaaaggtaaaaa
agtaAGGCTGTAAAGTttacacacccctgtgtcacagacccgcaaCTTCG
TGCCCCTAACCGTTCTGATTGTTCTACTGAATATTTTTCTATAGGTAATG
TTATATCCAAAACAACAAGTGGAATCTTGATCAAGAACATCGATTTTCGT
GGCTGGAGTGAAAATTGGGAGTCCTCTACTGGTGCGATCAACGAAGACGA
TATTATTGACCTTGAATCAATGACCGAGTCCGAGAAAGATGCTCTGGATG
AAGCCATTGAAGCGTGTGAAGTTGAAAAAACCATTGTGGATGTCGAGGGT
GTATTGCCTTCCATCCTTGTTCAACAAGAGAACACTACTAGCACAGTTGA
TCTAGATAAGTGTGGTTCCCATCTTCTCGGCAAATGCGAGGAAAATGACG
AAATGATATGCTGTGAGATATGTGAGCAATGGTACCACTTACTTTGTGCG
GGGCTTAAGTTCAAGAACAAATCTGAAAAGCAAAGGT

Coding sequence (CDS) from alignment at scaffold_285:407338..408424+

>TCONS_00057071 ID=TCONS_00057071|Name=TCONS_00057071|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_285:407338..408424+ (Clytia hemisphaerica)
GACGCTTGCGAAAAATGGTTTGCAAAGCTACGTGGTTTTGTTCGTGGAAA
GCCAAATTTGACTTTACTTGACATGTTGGATTTTTCAAAACGTTTGCAGA
GATTAGCTGAATTGGAAAAGCTGAAGACAGACACGTCGCCATCGTTAAAA
CTGAACGATCTAAAATGCGTAAAAAGCGAGATCGAAAAGGGAATGAAGGA
TGCAGAGGAAGAGTGTATCGAGCTGTTGTTGGAGCTTAAAATGGATGATG
ACCTcgaaaaagGTAATGTTATATCCAAAACAACAAGTGGAATCTTGATC
AAGAACATCGATTTTCGTGGCTGGAGTGAAAATTGGGAGTCCTCTACTGG
TGCGATCAACGAAGACGATATTATTGACCTTGAATCAATGACCGAGTCCG
AGAAAGATGCTCTGGATGAAGCCATTGAAGCGTGTGAAGTTGAAAAAACC
ATTGTGGATGTCGAGGGTGTATTGCCTTCCATCCTTGTTCAACAAGAGAA
CACTACTAGCACAGTTGATCTAGATAAGTGTGGTTCCCATCTTCTCGGCA
AATGCGAGGAAAATGACGAAATGATATGCTGTGAGATATGTGAGCAATGG
TACCACTTACTTTGTGCGGGGCTTAAGTTCAAGAACAAATCTGAAAAGCA
AAGGGACGCTTGCGAAAAATGGTTTGCAAAGCTACGTGGTTTTGTTCGTG
GAAAGCCAAATTTGACTTTACTTGACATGTTGGATTTTTCAAAACGTTTG
CAGAGATTAGCTGAATTGGAAAAGCTGAAGACAGACACGTCGCCATCGTT
AAAACTGAACGATCTAAAATGCGTAAAAAGCGAGATCGAAAAGGGAATGA
AGGATGCAGAGGAAGAGTGTATCGAGCTGTTGTTGGAGCTTAAAATGGAT
GATGACCTcgaaaaagGTAATGTTATATCCAAAACAACAAGTGGAATCTT
GATCAAGAACATCGATTTTCGTGGCTGGAGTGAAAATTGGGAGTCCTCTA
CTGGTGCGATCAACGAAGACGATATTATTGACCTTGAATCAATGACCGAG
TCCGAGAAAGATGCTCTGGATGAAGCCATTGAAGCGTGTGAAGTTGAAAA
AACCATTGTGGATGTCGAGGGTGTATTGCCTTCCATCCTTGTTCAACAAG
AGAACACTACTAGCACAGTTGATCTAGATAAGTGTGGTTCCCATCTTCTC
GGCAAATGCGAGGAAAATGACGAAATGATATGCTGTGAGATATGTGAGCA
ATGGTACCACTTACTTTGTGCGGGGCTTAAGTTCAAGAACAAATCTGAAA
AGCAAAGGGACGCTTGCGAAAAATGGTTTGCAAAGCTACGTGGTTTTGTT
CGTGGAAAGCCAAATTTGACTTTACTTGACATGTTGGATTTTTCAAAACG
TTTGCAGAGATTAGCTGAATTGGAAAAGCTGAAGACAGACACGTCGCCAT
CGTTAAAACTGAACGATCTAAAATGCGTAAAAAGCGAGATCGAAAAGGGA
ATGAAGGATGCAGAGGAAGAGTGTATCGAGCTGTTGTTGGAGCTTAAAAT
GGATGATGACCTcgaaaaagGTAATGTTATATCCAAAACAACAAGTGGAA
TCTTGATCAAGAACATCGATTTTCGTGGCTGGAGTGAAAATTGGGAGTCC
TCTACTGGTGCGATCAACGAAGACGATATTATTGACCTTGAATCAATGAC
CGAGTCCGAGAAAGATGCTCTGGATGAAGCCATTGAAGCGTGTGAAGTTG
AAAAAACCATTGTGGATGTCGAGGGTGTATTGCCTTCCATCCTTGTTCAA
CAAGAGAACACTACTAGCACAGTTGATCTAGATAAGTGTGGTTCCCATCT
TCTCGGCAAATGCGAGGAAAATGACGAAATGATATGCTGTGAGATATGTG
AGCAATGGTACCACTTACTTTGTGCGGGGCTTAAGTTCAAGAACAAATCT
GAAAAGCAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035954XLOC_035954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057071-proteinTCONS_00057071-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057071-exon-scaffold_285-1491911889:407338..407429TCONS_00057071-exon-scaffold_285-1491911889:407338..407429Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1510915933:407338..407429TCONS_00057071-exon-scaffold_285-1510915933:407338..407429Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1575043694:407338..407429TCONS_00057071-exon-scaffold_285-1575043694:407338..407429Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1491911889:407761..407930TCONS_00057071-exon-scaffold_285-1491911889:407761..407930Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1510915933:407761..407930TCONS_00057071-exon-scaffold_285-1510915933:407761..407930Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1575043694:407761..407930TCONS_00057071-exon-scaffold_285-1575043694:407761..407930Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1491911889:408032..408424TCONS_00057071-exon-scaffold_285-1491911889:408032..408424Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1510915933:408032..408424TCONS_00057071-exon-scaffold_285-1510915933:408032..408424Clytia hemisphaericaexon
TCONS_00057071-exon-scaffold_285-1575043694:408032..408424TCONS_00057071-exon-scaffold_285-1575043694:408032..408424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:407338..408424 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159093	0.232711	0	0	0	0.0847685	0.10227	0.670205	0.402194	0	0.64473	0.264888	0.158712	0.164824	0.271015	0.436261	0.179146	0.244825	0.0845597	0	0	0.112542	0.0912065	0.0829199	0	0.228667	0.109074	0	0.0882904	0.179908
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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