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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057067 ID=TCONS_00057067|Name=TCONS_00057067|organism=Clytia hemisphaerica|type=transcript|length=699bp
GTGTTTTTGGTATTCAATTTGATCAAAGAATCTCATCTTACAAAAATGAC
ATGGGTAGTGAGGCCATGTCTCCACGTGTTCTTCCAAAACGGCCTGGGTC
GAGAAAACAGCACTGCATAAATGACACCTGCGAGCCGCGTACGGATCTAA
AGGTGCTTCATTGTTATTATGGACaatatgtgcctgatatgaaatTGGGT
AATCGATAATTTCCTTCTTGATATGGAAATTGCTGGTGACAATTTCTTGT
TTCACTTTAGGATCGATAAGTGCCAGATCGCTTATTCGGCTGTTGACTGC
TCCATTATTATTTGAGTTGATAGGTGCCTGATATGAAATTGGGTGATCGA
TAATTTCCTTCTTGATATGGAAATTGCTGGTGACATTTTCTTGTTTCACT
TTAGGATCGATAGGTGCCGGATCGCTTATTCGGCTGTTGACTGCTCCATT
ATTATTTGGGTTGATAagtgcctgatatgaaacggattCTAAATTTGTTA
GGGTATCGATTTCTGGAAGTTCTTGTTTAACCTTCGGTGTCAGTTTTGTA
TAAGATGGGCTCCTAGGTGCCTGATACGAAATCGTGTGGATAGGTGGTTC
ATAATTATTTGGTTCCATATGGTAAGGTGGTTCTATTCTTGTCTTTTTTC
GAGGTGGAACGGGAGAATTCGAACTATCTTCAGGAATGTCGGAGCCTGA Run BLAST on NCBI transcript from alignment at scaffold_285:301557..302657+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057067 ID=TCONS_00057067|Name=TCONS_00057067|organism=Clytia hemisphaerica|type=transcript|length=1101bp|location=Sequence derived from alignment at scaffold_285:301557..302657+ (Clytia hemisphaerica)
GTGTTTTTGGTATTCAATTTGATCAAAGAATCTCATCTTACAAAAATGAC
ATGGGTAGTGAGGCCATGTCTCCACGTGTTCTTCCAAAACGGCCTGGGTC
GAGAAAACAGCACTGCATAAATGACACCTGCGAGCCGCGTACGGATCTAA
AGGTGCTTCATTGTTATTATGGACaatatgtgcctgatatgaaatTGGGT
AATCGATAATTTCCTTCTTGATATGGAAATTGCTGGTGACAATTTCTTGT
TTCACTTTAGGATCGATAAGTGCCAGATCGCTTATTCGGCTGTTGACTGC
TCCATTATTATTTGAGTTGATAGGTGCCTGATATGAAATTGGGTGATCGA
TAATTTCCTTCTTGATATGGAAATTGCTGGTGACATTTTCTTGTTTCACT
TTAGGATCGATAGGTGTCAGATCGCTTATTCGGCTGTTGACTGCTCCATT
ATTATTTGAGTTGATAGGTGCCTGATATGAAATTGGGTGATCGATAATTT
CCTTCTTGATCTGAAAATTGCTGATGAAATCATTTTCTTGTTTCACTTTA
GGATCGATAGGTGCCGGATCACTTATTCGGCTGTTGACTGCTCCATTATT
ATTTGAGTTGATAGGTGCCTGATATGAAATTGGGTGATCGATAATTTCCT
TCTTGATCTGAAAATTGCTGATGAAATCATTTTCTTGTTTCACTTTAGGA
TCGATAGGTGCCGGATCGCTTATTCGGCTGTTGACTGCTCCATTATTATT
TGGGTTGATAagtgcctgatatgaaacggattCTAAATTTGTTAGGGTAT
CGATTTCTGGAAGTTCTTGTTTAACCTTCGGTGTCAGTTTTGTATAAGAT
GGGCTCCTAGGtacctgatatgaaacgggttCTAAATTTGTTAGGGTATC
GATTTCTGGAGGTTCTTGTTTAACCTTCAGGCTGATAGGTGTCAGGTTTG
TATAAGAAGGGCTCCTAGGTGCCTGATACGAAATCGTGTGGATAGGTGGT
TCATAATTATTTGGTTCCATATGGTAAGGTGGTTCTATTCTTGTCTTTTT
TCGAGGTGGAACGGGAGAATTCGAACTATCTTCAGGAATGTCGGAGCCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057067-exon-scaffold_285-1491911889:301557..301969 | TCONS_00057067-exon-scaffold_285-1491911889:301557..301969 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1510915933:301557..301969 | TCONS_00057067-exon-scaffold_285-1510915933:301557..301969 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1575043694:301557..301969 | TCONS_00057067-exon-scaffold_285-1575043694:301557..301969 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1491911889:302264..302416 | TCONS_00057067-exon-scaffold_285-1491911889:302264..302416 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1510915933:302264..302416 | TCONS_00057067-exon-scaffold_285-1510915933:302264..302416 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1575043694:302264..302416 | TCONS_00057067-exon-scaffold_285-1575043694:302264..302416 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1491911889:302525..302657 | TCONS_00057067-exon-scaffold_285-1491911889:302525..302657 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1510915933:302525..302657 | TCONS_00057067-exon-scaffold_285-1510915933:302525..302657 | Clytia hemisphaerica | exon |
| TCONS_00057067-exon-scaffold_285-1575043694:302525..302657 | TCONS_00057067-exon-scaffold_285-1575043694:302525..302657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:301557..302657 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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