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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057052 ID=TCONS_00057052|Name=TCONS_00057052|organism=Clytia hemisphaerica|type=transcript|length=1431bp
tttcaatattttttataataaaacCGTTCTGTTGTCTCACAGCATTTCTG
TGGCATTTTATTACATCTTATTTGAGacgatttttttatcaatttcaatt
tttatttgtcATACGTGGAGGTTTTGGTGAAAGACGTTCAGTTGAAAGTT
GTCAAAAGTCAATCCTTTTTAAAAAGACAACCGCCTAGCTTGGAAGatga
tAAAGGTGTACCTGTTACTCGCATTGTTATTGGCAGCATCAATTTACGAA
TGTGCACCAGCAGCCAGCACTGCCCGCCCACCACTTCGAATTCCAGTTCT
CGTCGAAGAATCAGAAGCTGACTCATTCCCATTCCACCACGACCGCGTCC
GAAGAGAAACGTCAAAGAAGAAGAAGCCCAAAGTTCAAATCATCAGACTA
AGCGATCTAAGCAAACACAACAACAGGAAAAATACAGGAAAATAAAGAac
acaaaatgacgtcataatttattaCAACATCAAATCTTCCTGCCATAGAA
TTATCTTAAagtacagttgatgctctcttattcgacgttctactactCGA
TACGCTTCCttattcgataaaatttaaAGCCCAAGTCATCAAGATTTCTC
ATAAACaacgctctattattcgataacctcccatattcgatgaaaatcca
attccccttgaagatcgaattagagagcattaACTGTATTCCATTTTATC
TTTTGGTTTTGCACTCTGTTAATTTCTGGAATAAAATAATTCTCACATCT
GGCTCACTGACTTTATCAGCAcgtaatatttttaaagatCAACATCTTAA
ATAGtttaacattttcattttgaattttcatttaacCTTCGTCTTGTCTA
TGATTTatttaataaattttaatttcattacCGTTATTTTCTAATAGTTT
TAGCTGTGTTATAACTAACCCCTCGGGCTTTTTAGTATTCCCTCTCTTTC
AAGATCATTTTTCTGTACCTGGGGTTTATAGGCAATGGTTAGGTGcatct
tgattttttaaagattgggtACAAAATTGTGGCGGAGATTTAATTTGAGT
GATGACAATTTTGACGGAAATacggaaaaataaatttgataggAATTTGA
TTTGGTGGtagagaaaaattttcgaataaaattgttattaaataaacaaa
aatacctGTAATAGctcgaatttggaaaaaaacattgaatAGATAAATTT
GTGGTGGAAATTTCATTTAGTGGAGGGCACAAAAAATAAATGTTGgagaa
aaattaatttgaaatcctccaaaatttcttcctttattcCTTCAGTACTA
TAGGACGCTAAATAGatcatgttttgttttgttggttcaGTGTGCCATTC
TTTTGgaattaaattaaattcttgATCAAAATTATCGGCATCCGAAAGAA
TTGTtcataaataaaacaaatttaacGGGTA Run BLAST on NCBI transcript from alignment at scaffold_285:137494..143307+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057052 ID=TCONS_00057052|Name=TCONS_00057052|organism=Clytia hemisphaerica|type=transcript|length=5814bp|location=Sequence derived from alignment at scaffold_285:137494..143307+ (Clytia hemisphaerica)
tttcaatattttttataataaaacCGTTCTGTTGTCTCACAGCATTTCTG
TGGCATTTTATTACATCTTATTTGAGacgatttttttatcaatttcaatt
tttatttgtcATACGTGGAGGTTTTGGTGAAAGACGTTCAGTTGAAAGTT
GTCAAAAGTCAATCCTTTTTAAAAAGACAACCGCCTAGCTTGGAAGGTAA
GACTTATTTTTTCTATCAATCTAACATTTTGACCGGTGCTGATAAAAGCT
GATTGCACACTTATCTTACCGTCAATGACCAATTCCCTAGAATGACCGAC
TAAATAGGTCATGATGAAATTTCTTGTCTTCCTGGAATTTCTGTCGGGTA
AGACATTCAAACAAACCTTATTCTAACTTAATCTGTCGTGTAACGACTCC
CCTATCTATTCATACCGCATGTAAGCTATAAAGCCCTGATCTAGGAAATG
TAAAAATCAATACATAAggcgaatgataaaaaatgttttgtttccggaat
gcgggtgaaggaaaaaagttatcatgcggccggccggaaaatattttttt
tgtTGCTATTTTTGATAATTTATGGCTCATTGAAATAGAGTTTAAGAATA
ATTTTTATGTATAAACACAGCATAAATTATGCCCTAAATTACAACAAGTA
CGGACTACTAACGAACGAAAATTTGCGGCCGGGTCAGAAAAAAAAATTTT
TTCACCCGGCCGGTTTCAGGAAACAAGAAATTTTTTTTGTTTCGCCTAAT
CATCACAACTTTTGTAAGTTTTGTGTAACTATTGAAAATGTAGAACCATG
ATAAGAGAACCATGTCAGACATGATATGAAACTCCCTTAAACGAGTTATC
ACTACACCAGGGGGGGGGGGTACCGAGCAGTGTACTGACCCATAGCTGGT
GGGGTGGTGTACTTTTTAGGTTAAATTGAGttagtacaatgtactaaaag
ggtggtcctcttagtaaacaacaatgaaaaagttagtacattAATTGTAT
TAAAAATGGTGGTGTTCTGAATTGATACACACTGAGAAGTTTGTACATTG
TGCTAATTTCAGtggtaaaaacacacaaacccAGCGAATTCCCATGTATA
TTTTTCCTTATTTCTGGAGAAAAGTTAGCACAGTGTGCTGAAAGTACTAC
AATGCattgggcgaaataagagatttccaatcctggaaatatcttgaaaa
tatgatatttccatatatacttttgtaaatatggaaatatgtcttttcta
tatttccaaagttgtggaaatatcatatttcaagatattttcaattctga
aattcattaaaacatcatattttcatgatatttccagGTGGTCTCAAAGC
CCTGACCATGGAAGAAAGTTAGtatacagtgtactaaaaagggtggtggt
ctttttttttggaaataaatccaaaaatcaagtaAGTATCCCTCGGGTGC
CCCCCTGACAACACTTATAGAAACTCCTGATTACGAACAACTCTCAGCGC
GGCTCGTTTTGACGCTTCCAATCAGACAAACAacaaacccagctggcaca
cagcgttgtttcaacgtttatctaacgttcacaacgtccgtAGAACGTTG
AACGTTGAACCAAACAACTAAGCAAATGATATACATATCCTTAAAAACTA
TACTTAAAATCTTGACTATATGTACCGTGAATTTGCTCGACTTTCCAATC
TATTTTCTGAACACCACTGATTGGTTCAACGCTAGACCAATTAGAGAAAG
AGAAAGAACATTTCCTTAGACCAATCAAATATCGTAGGTTGGTCtgatgt
cgacatccctcatatGATTCCGACCCTTCTTTAACTCTTAGACCACGAGG
GACGCGTATATGCGTCAAAAACAAGCTAAAATACTTAGTCTTAGACTTGA
GGCTatagctcctgaccacttgatttaaagatGCATAAACCAAATGTTTT
AAGAAAGAATGTAAAAATAGCTTTCTAATGGTAACAAGGATATTCTctaa
atcaaaagttacaatcttttatggcactttaaagttttgagtttcaaaaa
ataaatttaggaaaaatttcaacattttcgaaaaaacacCGCACACAAAG
GGTTAATAGGAATCGCAACTAAACGGTCAGAGTGGAAAACATCTTTATTT
TCAATTAGTGACTCCGACCTTCCTTTTAATCCTATCTTGAAGGGTGACGG
AATTACATGATGGATGTCAACATGTCATTAGACCAATCAACAAGTCTTAA
CACGTATGAATTCAGAGGATCCTACCAGTCAAATAGCCTTGGAattcaag
ctcaaaatttaagagaattaaaaaattaaaactcagattacaaaattcta
aaatttcagATCAGCAACAAAAGCATTAATAAACTAGACCCTGTACAAAG
TTTATCGCTTAGATTACTAGACTACCAattagactaggagcgtttggcga
agtcgccattttgagagaaaatgttaaaaaatccaaataactaCTTGGAG
TTGGAAGATACAATCAAacatgagaaacaaacatcagatttgcaatccct
tattctcaaacaaaaacattgctttatactgtttttaccttccaaaaaca
actaaaatctggcagACTGTttcgcctaagcaaaagcatattaccatata
ctaccggacCACTTAATcacgccatccagtctataaaaaaagctttaagt
ggaccccgggctagaaTAACAATCAGAttgattaaagatttttcagCAGA
ATCTTGGAAAGttcttttcccttttttttgaTTGGGGAAcaaaatttggt
gatttttgaGCCAATGAATATGAACAATCTTTTCAAAGCGTACAAAAGCA
TGACGATTTCACAAAGAAGCTTTTGCCTTTGGTAAACAGTATGTACTAGT
AATTGGTAGgaaaaattcagtgaaaattagATCGTTCTCCGTCATACCAT
AGTTCCCTGAACACAGAAATATGTAACTGAATTTACCATCAGTGATGATG
GTTAGATTCACATTAcattaacctgataacagctgtcgCGGAagattcta
caacaagaatcttgttgtgcgccggaaagtcaaaaacagATACGGCGCCc
cattcataaacacaatcacgcaactttgttgtcgttccaagtccttttag
acgaacgcggtccttacgatttcgagattgcatattcgtcagattgttat
atTTCCACACATCCTTTTAGAGCTTCaacgtggtgtgcagaaaacattca
caatctgatctcaggttacttTACATGATGCCCGGTTTTGTATCGAGCTG
TCTAGGAGTCATCTTGTTATTATCTTTTTACGCTGTAGTTTATACTGCCT
GCCAGATGCGAGACACTTACATACAGTTTTTCGGATCAAGTTAGCGTGAA
TCACTAAAAAACAAGGCCAACAAATCTCCAGGAACTGGGGCGATTCAATA
ATTCTGACTCCCTTAAAGAACTACAATTagcgctctctaattcgacgttc
tactattcgataggctccaattattcaataaaattgaaagtccccgtcaa
caagaaactctcataagcgacgctcccttattcgatgaaaatccaattcc
ctttgaagatcgaattagagagagtcaatttTAATATCaggttctttttc
tttttcagatgatAAAGGTGTACCTGTTACTCGCATTGTTATTGGCAGCA
TCAATTTACGGTCAGTAGTTTTTTTTGTGAAGAGGGTAATTCTTCCCTGT
CTCATTTAGAAAATGAGAACGAAATGTTTagcaacccagctggcacacaa
cgttgtttcaacgtttatctaacattatatggacgttgcaaatgttagaa
aaacgttgaaacaacgttgtggaTGGATCGAAGGAGCCAAATACTGATTG
CGGAGAATCGCCTGTTTAAATTTATGGGAATTTCGAATTCTATTGTTTAC
GGGGGATGTAAGATATTAGGTAGACTATGCTGGGACTATACTaaagtcta
agacaaatcactatctaagaaataagcccaaagccgaagaagaTTCGCAA
AATTCGAAGATAccaccataacgccataccaccatattttcccgccttta
catGACTGTAATGGACGATAGCATAGTCTAGATGCCAGGCTATTTTCTCA
CTTGGAGTGGTTTTTTAAATAGACTTTCCCCAGACCCCAGTTAAAGATGA
GGGTTGAGGTCCTAATTTATGGTAGCTTAGAGATATTCATGACTTAACAC
ACAGCATGGAGCAGTACCGATTCTCGCATCctttcttttattgaaaagcA
CTGATATTtgcaaatggtaggagatacgcgtttttttacaaaacatccaa
aaattttgaaaccttcggatgttcttaactttttgagattttttaagcct
aaaattgttcttagcatgttcttattttcaccattttgtgagtattattg
tccattttcttaagaaattggccgttttagagcccacaaagccttaaaat
attcttaacttgttctaaacattttggccatcgaagccttatgttcttat
atagtttgttcttataaaaaacgtgtataagttTAATTATGTTCTTTTAA
CAAATAATTTTATTCCATCTCCTCCTTTTAGAATGTGCACCAGCAGCCAG
CACTGCCCGCCCACCACTTCGAATTCCAGTTCTCGTCGAAGAATCAGAAG
CTGACTCATTCCCATTCCACCACGACCGCGTCCGAAGAGAAACGTCAAAG
AAGAAGAAGCCCAAAGTTCAAATCATCAGACTAAGCGATCTAAGCAAACA
CAACAACAGGAAAAATACAGGAAAATAAAGAacacaaaatgacgtcataa
tttattaCAACATCAAATCTTCCTGCCATAGAATTATCTTAAagtacagt
tgatgctctcttattcgacgttctactactCGATACGCTTCCttattcga
taaaatttaaAGCCCAAGTCATCAAGATTTCTCATAAACaacgctctatt
attcgataacctcccatattcgatgaaaatccaattccccttgaagatcg
aattagagagcattaACTGTATTCCATTTTATCTTTTGGTTTTGCACTCT
GTTAATTTCTGGAATAAAATAATTCTCACATCTGGCTCACTGACTTTATC
AGCAcgtaatatttttaaagatCAACATCTTAAATAGtttaacattttca
ttttgaattttcatttaacCTTCGTCTTGTCTATGATTTatttaataaat
tttaatttcattacCGTTATTTTCTAATAGTTTTAGCTGTGTTATAACTA
ACCCCTCGGGCTTTTTAGTATTCCCTCTCTTTCAAGATCATTTTTCTGTA
CCTGGGGTTTATAGGCAATGGTTAGGTGcatcttgattttttaaagattg
ggtACAAAATTGTGGCGGAGATTTAATTTGAGTGATGACAATTTTGACGG
AAATacggaaaaataaatttgataggAATTTGATTTGGTGGtagagaaaa
attttcgaataaaattgttattaaataaacaaaaatacctGTAATAGctc
gaatttggaaaaaaacattgaatAGATAAATTTGTGGTGGAAATTTCATT
TAGTGGAGGGCACAAAAAATAAATGTTGgagaaaaattaatttgaaatcc
tccaaaatttcttcctttattcCTTCAGTACTATAGGACGCTAAATAGat
catgttttgttttgttggttcaGTGTGCCATTCTTTTGgaattaaattaa
attcttgATCAAAATTATCGGCATCCGAAAGAATTGTtcataaataaaac
aaatttaacGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057052-exon-scaffold_285-1491911889:137494..137689 | TCONS_00057052-exon-scaffold_285-1491911889:137494..137689 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1510915933:137494..137689 | TCONS_00057052-exon-scaffold_285-1510915933:137494..137689 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1575043694:137494..137689 | TCONS_00057052-exon-scaffold_285-1575043694:137494..137689 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1491911889:141152..141203 | TCONS_00057052-exon-scaffold_285-1491911889:141152..141203 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1510915933:141152..141203 | TCONS_00057052-exon-scaffold_285-1510915933:141152..141203 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1575043694:141152..141203 | TCONS_00057052-exon-scaffold_285-1575043694:141152..141203 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1491911889:142125..143307 | TCONS_00057052-exon-scaffold_285-1491911889:142125..143307 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1510915933:142125..143307 | TCONS_00057052-exon-scaffold_285-1510915933:142125..143307 | Clytia hemisphaerica | exon |
| TCONS_00057052-exon-scaffold_285-1575043694:142125..143307 | TCONS_00057052-exon-scaffold_285-1575043694:142125..143307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:137494..143307 + |
Blast
The following BLAST results are available for this feature:
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