TCONS_00057025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057025
Unique NameTCONS_00057025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057025 ID=TCONS_00057025|Name=TCONS_00057025|organism=Clytia hemisphaerica|type=transcript|length=523bp
CCAATTTTGGCATGAGTAGATTAAGCGACTACGTACATAACTATTTAAGA
AGATGATACGAGTTTTCAAATGgacattgaaattttgaagaaggtTGGTC
ATTTCTGCGAATTTGTTAGTCGCCTGTTGAATACGGTAATTAATCTCGAT
GTCACCGGTATTCGGTTCCTCAAAGTGAATGAAAGCTCTGAGATATTTGa
acgttttgacgtttttgatatCAATGTTCCTCAATTTGGTGATGGATTTT
GGGTAATCCTGTTCGGTACAGTTAAGTATCATAGATTCGGTTTTCAAAGC
GTTTATTGATAGTCCAAATCGAGTAAACGTTTGATCTAAAAAGTTGATAG
AGCTTTGCAAATCTAGTTGACTGATGAGAAAAAGGATGAGATCGTCCGCG
TATCCGCACCACGGTAATGTCGAATGTCCCCCAATTGCGTAAATTGTTCT
CTCTCATAGATATTCTATTTGCTCTAGAGATACTTCTTGGATTCAAACGg
tatgaatgtttatagaagtTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_284:789640..790162

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057025 ID=TCONS_00057025|Name=TCONS_00057025|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_284:789640..790162 (Clytia hemisphaerica)
ATCAacttctataaacattcatacCGTTTGAATCCAAGAAGTATCTCTAG
AGCAAATAGAATATCTATGAGAGAGAACAATTTACGCAATTGGGGGACAT
TCGACATTACCGTGGTGCGGATACGCGGACGATCTCATCCTTTTTCTCAT
CAGTCAACTAGATTTGCAAAGCTCTATCAACTTTTTAGATCAAACGTTTA
CTCGATTTGGACTATCAATAAACGCTTTGAAAACCGAATCTATGATACTT
AACTGTACCGAACAGGATTACCCAAAATCCATCACCAAATTGAGGAACAT
TGatatcaaaaacgtcaaaacgttCAAATATCTCAGAGCTTTCATTCACT
TTGAGGAACCGAATACCGGTGACATCGAGATTAATTACCGTATTCAACAG
GCGACTAACAAATTCGCAGAAATGACCAaccttcttcaaaatttcaatgt
cCATTTGAAAACTCGTATCATCTTCTTAAATAGTTATGTACGTAGTCGCT
TAATCTACTCATGCCAAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035920XLOC_035920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057025-exon-scaffold_284-1491911889:789640..790162TCONS_00057025-exon-scaffold_284-1491911889:789640..790162Clytia hemisphaericaexon
TCONS_00057025-exon-scaffold_284-1510915933:789640..790162TCONS_00057025-exon-scaffold_284-1510915933:789640..790162Clytia hemisphaericaexon
TCONS_00057025-exon-scaffold_284-1575043694:789640..790162TCONS_00057025-exon-scaffold_284-1575043694:789640..790162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:789640..790162 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.461659	0	0.383787	0.99666	0.178648	0.713197	0.871571	0.456886	0	0.553442	0.264507	0.0974166	0.69438	0.259215	0.246385	0.295638	0.0939682	0.196608	1.68999	0.471856	0.697955	0.986149	0.259096	0.379696	0.761889	0.497669	0.218832	0.451931	0	0.0279693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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