TCONS_00057024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057024
Unique NameTCONS_00057024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057024 ID=TCONS_00057024|Name=TCONS_00057024|organism=Clytia hemisphaerica|type=transcript|length=787bp
CTTGCCACCACAATTATATTTCATAATACTTTGATAATTTAGTTCTATAA
tatacaaatttttaaaattttctatcgCCTAATATAACATAAATACTTTT
CTCTCTTAAGAAATTTTACGTATAATTTAATTTCcactttatcaatattt
caaaaactttacaataataattttcaactttaatATTTTGATCAAATATC
AATCGTGAAGTTTGTTCCCTGTACTCCTCCGATAAAAGAAATCTACAGTT
GAAATTGTTTTTACTCAAAGTCCCACAAAACGTTCATAttacgttatttg
gacgttctggacgttaaatgaacgttgctTGGACGTTTCTTTAGCTCCTG
GTCATGGATAAAGTACTGGTTAACGATCTTTTACCGTTCGAGTGTAAAGC
ATAAACAGTCATATTACTACTTTTATGAACTGCTTTTAACTTGGTGTATG
AATTATATTCTTGTTTTCCTGTCTTAGATGACGAGCTTGGTGCAGCCAAA
GAAGctttgttgctgttgttgctaCCGGTTGTTGATGTAAGACTCTTGAA
TCCAAATCCACTGCTTTTGTTTAATGAACtcatcttgattttgttttaat
ttgtaGTTGACTGGTTATTCTTGGTTTTGTTTGGTTCCTAACCTGTTGGT
TTTAGGTCGATGCAGTTGATAAGTAGATGTcctatttttttgtaattcca
AACAGCTTGTTGAATGAAAcaattctttcttttcaatttcaaattaaaga
aTCTGTTGGTTCTTCTTTTTATCGTAGAAGAAAACAA
Run BLAST on NCBI

transcript from alignment at scaffold_284:704503..705289

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057024 ID=TCONS_00057024|Name=TCONS_00057024|organism=Clytia hemisphaerica|type=transcript|length=787bp|location=Sequence derived from alignment at scaffold_284:704503..705289 (Clytia hemisphaerica)
TTGTTTTCTTCTACGATAAAAAGAAGAACCAACAGAttctttaatttgaa
attgaaaagaaagaattgTTTCATTCAACAAGCTGTTtggaattacaaaa
aaataggACATCTACTTATCAACTGCATCGACCTAAAACCAACAGGTTAG
GAACCAAACAAAACCAAGAATAACCAGTCAACtacaaattaaaacaaaat
caagatgaGTTCATTAAACAAAAGCAGTGGATTTGGATTCAAGAGTCTTA
CATCAACAACCGGtagcaacaacagcaacaaagCTTCTTTGGCTGCACCA
AGCTCGTCATCTAAGACAGGAAAACAAGAATATAATTCATACACCAAGTT
AAAAGCAGTTCATAAAAGTAGTAATATGACTGTTTATGCTTTACACTCGA
ACGGTAAAAGATCGTTAACCAGTACTTTATCCATGACCAGGAGCTAAAGA
AACGTCCAagcaacgttcatttaacgtccagaacgtccaaataacgtaaT
ATGAACGTTTTGTGGGACTTTGAGTAAAAACAATTTCAACTGTAGATTTC
TTTTATCGGAGGAGTACAGGGAACAAACTTCACGATTGATATTTGATCAA
AATattaaagttgaaaattattattgtaaagtttttgaaatattgataaa
gtgGAAATTAAATTATACGTAAAATTTCTTAAGAGAGAAAAGTATTTATG
TTATATTAGGcgatagaaaattttaaaaatttgtataTTATAGAACTAAA
TTATCAAAGTATTATGAAATATAATTGTGGTGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035919XLOC_035919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057024-exon-scaffold_284-1491911889:704503..705289TCONS_00057024-exon-scaffold_284-1491911889:704503..705289Clytia hemisphaericaexon
TCONS_00057024-exon-scaffold_284-1510915933:704503..705289TCONS_00057024-exon-scaffold_284-1510915933:704503..705289Clytia hemisphaericaexon
TCONS_00057024-exon-scaffold_284-1575043694:704503..705289TCONS_00057024-exon-scaffold_284-1575043694:704503..705289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:704503..705289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12276	0.179566	0	0	0.0827746	0	0	0	0.0517239	0.320342	0	0.0408789	3.19501	0.93267	0.163527	0.11221	5.70177	3.84494	0.326242	1.16072	0	0	0.0703773	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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