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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057021 ID=TCONS_00057021|Name=TCONS_00057021|organism=Clytia hemisphaerica|type=transcript|length=1804bp
TGGTagagttaaaagtaaaagaacaTTCTGGTTTGATATTCTCCTTGAAT
CGcaaattttctcacttttttaaactttttttcccaaaatctcCGAAAAA
ATGTACCCGACGAGGGACTGTCTATTTCTGTGATCTTGCGACCCTACGTG
GGCTGGTGGAGGTGAAAAAGGTACTCTTACCAGCGGCACATCCCAATACC
CCTTTTCGCCCAAGTACCCcaaacccctgtgtcacagacctgctgGTGGA
AATATTTGGAAAGATTTCCTagaaaataccctagaatttcagctcCACTG
GGAAATTCACCTTGACTTTATCCCCATTTGAAACTCAAAGCttgaaaatt
gcactccaaaaccatccccaccaggatttcaataggagtctttatcccca
ctgaagaaaaaagttccaccggggttgtgagacaggggtgtttaccATCC
CCTTCCTCCAGTCGACATACTTCAAAAAGAGTATAGCTTAAACTAGGATG
ATCTGTTTTTGAAAGGACACAACCATAGTTTATGTCGATGGAAAGATCTT
GTTTGGGTAAATCGTTATACTTTTCATAACTTGTACTTTTTGAATATATT
ATACTGGAACCTTACATCCGAAATAAAATGTTAAACAACAAGGAAGATAG
TCTATTTTCTATTTGTTGCCGGCCTCAAAAGGCAAGGATCTACTTGGACT
CATTTAGAGCTATTGTCCATTTTACATTTCACGTTTCAACGACAGTTTCC
AGCTCACCATCCCGATAAACTTTTTCGAAACCCTCAGAAATCTCTTCTTC
ATGTTCATTGAAGTATTCTTCCTCTAAAACCGGAGTCATTGTTCGAAAAG
AACCATAACTCCGCGCTGGAGGGTGATATATATTGTCTTTTTGAAGAACA
TTATTCTCTTCACACTCCATCAGAGTGTCAAAATTAATCGAAATACCAAA
ACATCCAGATAAGATACAGTCCAATAATTCATTTTGCGAAAAAACCAACA
TGAGAGGAGTCACAATGGCTTTCAACAGTGAGATTCTGGAACAATATTTC
ACAGCCAAAACATTTTCAACGCCAATAACATCAATGACTTCACGAGGAGC
TGTAAGAATTGCAAATAAAATATATAACCATAAAACGGTTCTAAATTTCA
ATCCACCTTCAGGGTAAAAATGACCATCATCCATTCGGTATTCGTATAAA
ATCATAACCAAACTTATCAATGAGGGtacaaagaaaatgaagagCGCTAT
TCCTATCGAATCACTCTTGACAAAGAATCCAAAGGCAAATGATACGGTAA
CGAGAGTGGCCAGCGTGGTGGCAATACGTTCGAGACTGCCACAACTTGTT
ACCAGGTATTTATAAGAAACTCTGGATGcgatcaacaacaacaaactaaA
ACCAGTGATTGCCAGAAATGTTTTTTGGAAGCTATACAAAATAGGATGTT
CTTTATGGTTCGATGTACTAAATAAAGTACAATACATGCTTCCCACCTCA
GaccaacaaatcaaaatgaCCAAATGTGACTGGGGCTCTGATTCTATCAG
TCTGGAGCACACATATGCCAAAGTAGATCCAAGGTTGATGATAAAGCCCC
ATACACACCATAGTACAAGACCAGCCAGTTCTAGATCATGATTAGCATTT
TGAGCTGGTAACACCAGTGTCCATAAAATCAAGCAAATCATACTTGGAAC
AAATATGAATAGAAATACAGGTGCTGCAATATATTTGTAGCGTTGATCAC
CATGTTGTCCTACTTGGTGCATATTGATAGTATATCTTCTTGATTGCTCA
ATAT Run BLAST on NCBI protein sequence of TCONS_00057021-protein >TCONS_00057021-protein ID=TCONS_00057021-protein|Name=TCONS_00057021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
IEQSRRYTINMHQVGQHGDQRYKYIAAPVFLFIFVPSMICLILWTLVLPA
QNANHDLELAGLVLWCVWGFIINLGSTLAYVCSRLIESEPQSHLVILICW
SEVGSMYCTLFSTSNHKEHPILYSFQKTFLAITGFSLLLLIASRVSYKYL
VTSCGSLERIATTLATLVTVSFAFGFFVKSDSIGIALFIFFVPSLISLVM
ILYEYRMDDGHFYPEGGLKFRTVLWLYILFAILTAPREVIDVIGVENVLA
VKYCSRISLLKAIVTPLMLVFSQNELLDCILSGCFGISINFDTLMECEEN
NVLQKDNIYHPPARSYGSFRTMTPVLEEEYFNEHEEEISEGFEKVYRDGE
LETVVET Run BLAST on NCBI transcript from alignment at scaffold_284:652513..654316 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057021 ID=TCONS_00057021|Name=TCONS_00057021|organism=Clytia hemisphaerica|type=transcript|length=1804bp|location=Sequence derived from alignment at scaffold_284:652513..654316 (Clytia hemisphaerica)
ATATTGAGCAATCAAGAAGATATACTATCAATATGCACCAAGTAGGACAA
CATGGTGATCAACGCTACAAATATATTGCAGCACCTGTATTTCTATTCAT
ATTTGTTCCAAGTATGATTTGCTTGATTTTATGGACACTGGTGTTACCAG
CTCAAAATGCTAATCATGATCTAGAACTGGCTGGTCTTGTACTATGGTGT
GTATGGGGCTTTATCATCAACCTTGGATCTACTTTGGCATATGTGTGCTC
CAGACTGATAGAATCAGAGCCCCAGTCACATTTGGtcattttgatttgtt
ggtCTGAGGTGGGAAGCATGTATTGTACTTTATTTAGTACATCGAACCAT
AAAGAACATCCTATTTTGTATAGCTTCCAAAAAACATTTCTGGCAATCAC
TGGTTttagtttgttgttgttgatcgCATCCAGAGTTTCTTATAAATACC
TGGTAACAAGTTGTGGCAGTCTCGAACGTATTGCCACCACGCTGGCCACT
CTCGTTACCGTATCATTTGCCTTTGGATTCTTTGTCAAGAGTGATTCGAT
AGGAATAGCGctcttcattttctttgtaCCCTCATTGATAAGTTTGGTTA
TGATTTTATACGAATACCGAATGGATGATGGTCATTTTTACCCTGAAGGT
GGATTGAAATTTAGAACCGTTTTATGGTTATATATTTTATTTGCAATTCT
TACAGCTCCTCGTGAAGTCATTGATGTTATTGGCGTTGAAAATGTTTTGG
CTGTGAAATATTGTTCCAGAATCTCACTGTTGAAAGCCATTGTGACTCCT
CTCATGTTGGTTTTTTCGCAAAATGAATTATTGGACTGTATCTTATCTGG
ATGTTTTGGTATTTCGATTAATTTTGACACTCTGATGGAGTGTGAAGAGA
ATAATGTTCTTCAAAAAGACAATATATATCACCCTCCAGCGCGGAGTTAT
GGTTCTTTTCGAACAATGACTCCGGTTTTAGAGGAAGAATACTTCAATGA
ACATGAAGAAGAGATTTCTGAGGGTTTCGAAAAAGTTTATCGGGATGGTG
AGCTGGAAACTGTCGTTGAAACGTGAAATGTAAAATGGACAATAGCTCTA
AATGAGTCCAAGTAGATCCTTGCCTTTTGAGGCCGGCAACAAATAGAAAA
TAGACTATCTTCCTTGTTGTTTAACATTTTATTTCGGATGTAAGGTTCCA
GTATAATATATTCAAAAAGTACAAGTTATGAAAAGTATAACGATTTACCC
AAACAAGATCTTTCCATCGACATAAACTATGGTTGTGTCCTTTCAAAAAC
AGATCATCCTAGTTTAAGCTATACTCTTTTTGAAGTATGTCGACTGGAGG
AAGGGGATggtaaacacccctgtctcacaaccccggtggaacttttttct
tcagtggggataaagactcctattgaaatcctggtggggatggttttgga
gtgcaattttcaaGCTTTGAGTTTCAAATGGGGATAAAGTCAAGGTGAAT
TTCCCAGTGgagctgaaattctagggtattttctAGGAAATCTTTCCAAA
TATTTCCACcagcaggtctgtgacacaggggtttgGGGTACTTGGGCGAA
AAGGGGTATTGGGATGTGCCGCTGGTAAGAGTACCTTTTTCACCTCCACC
AGCCCACGTAGGGTCGCAAGATCACAGAAATAGACAGTCCCTCGTCGGGT
ACATTTTTTCGgagattttgggaaaaaaagtttaaaaaagtgagaaaatt
tgCGATTCAAGGAGAATATCAAACCAGAAtgttcttttacttttaactct
ACCA Coding sequence (CDS) from alignment at scaffold_284:652513..654316 >TCONS_00057021 ID=TCONS_00057021|Name=TCONS_00057021|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_284:652513..654316 (Clytia hemisphaerica)
ATTGAGCAATCAAGAAGATATACTATCAATATGCACCAAGTAGGACAACA
TGGTGATCAACGCTACAAATATATTGCAGCACCTGTATTTCTATTCATAT
TTGTTCCAAGTATGATTTGCTTGATTTTATGGACACTGGTGTTACCAGCT
CAAAATGCTAATCATGATCTAGAACTGGCTGGTCTTGTACTATGGTGTGT
ATGGGGCTTTATCATCAACCTTGGATCTACTTTGGCATATGTGTGCTCCA
GACTGATAGAATCAGAGCCCCAGTCACATTTGGtcattttgatttgttgg
tCTGAGGTGGGAAGCATGTATTGTACTTTATTTAGTACATCGAACCATAA
AGAACATCCTATTTTGTATAGCTTCCAAAAAACATTTCTGGCAATCACTG
GTTttagtttgttgttgttgatcgCATCCAGAGTTTCTTATAAATACCTG
GTAACAAGTTGTGGCAGTCTCGAACGTATTGCCACCACGCTGGCCACTCT
CGTTACCGTATCATTTGCCTTTGGATTCTTTGTCAAGAGTGATTCGATAG
GAATAGCGctcttcattttctttgtaCCCTCATTGATAAGTTTGGTTATG
ATTTTATACGAATACCGAATGGATGATGGTCATTTTTACCCTGAAGGTGG
ATTGAAATTTAGAACCGTTTTATGGTTATATATTTTATTTGCAATTCTTA
CAGCTCCTCGTGAAGTCATTGATGTTATTGGCGTTGAAAATGTTTTGGCT
GTGAAATATTGTTCCAGAATCTCACTGTTGAAAGCCATTGTGACTCCTCT
CATGTTGGTTTTTTCGCAAAATGAATTATTGGACTGTATCTTATCTGGAT
GTTTTGGTATTTCGATTAATTTTGACACTCTGATGGAGTGTGAAGAGAAT
AATGTTCTTCAAAAAGACAATATATATCACCCTCCAGCGCGGAGTTATGG
TTCTTTTCGAACAATGACTCCGGTTTTAGAGGAAGAATACTTCAATGAAC
ATGAAGAAGAGATTTCTGAGGGTTTCGAAAAAGTTTATCGGGATGGTGAG
CTGGAAACTGTCGTTGAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057021-exon-scaffold_284-1491911889:652513..654316 | TCONS_00057021-exon-scaffold_284-1491911889:652513..654316 | Clytia hemisphaerica | exon |
| TCONS_00057021-exon-scaffold_284-1510915933:652513..654316 | TCONS_00057021-exon-scaffold_284-1510915933:652513..654316 | Clytia hemisphaerica | exon |
| TCONS_00057021-exon-scaffold_284-1575043694:652513..654316 | TCONS_00057021-exon-scaffold_284-1575043694:652513..654316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:652513..654316 . |
Blast
The following BLAST results are available for this feature:
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