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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057020 ID=TCONS_00057020|Name=TCONS_00057020|organism=Clytia hemisphaerica|type=transcript|length=1356bp
ttgaaatattgcaaatcgagctgacaatatattgggAATACCTTATCAAT
ATATTGCTGGCACTCAGCCATACATCTTCAATATAACCAATATATTGCCT
GGCAAtaatattgtgtagtgtatgcaGTCCTTACGAAGGACGCTTCCTAG
AAatctttttgaaagattttcgagGCATTTAGCGTTTAGCGAGTGATCCT
TCCTTTTGTAGGATTTCGTAAGGTTTACTTTCATTCAATTAATGTTTTTc
tcgttcattcattcattcattcattcttgCACAATACCAATATAAATCCT
TTATTATCTACGTAATACTCTTGGGGAATTGTATCAACCCCATCACAAAT
AAACTCAGAACCAGACCAAATCATTTTCAATGACTTCTCCGTAGAATTCG
GATGCAATACCAAAACACACTTAATGCTCTCTTTATCCCAATCATCCGAC
GTTGGTTGAATCTTCATATTAGCTGGCTCCAGATACTCATAAGGCTCACT
AACCAATGACAACTTACTTTTCCCTCTCAATTCTTTCTTGGTGACTTCAA
TCTTCCGGAAAACGTGCttctcaaaattatatttttgaccaaaaatcaTC
TTCTTTATCAAGCCTTGATACCACGACCCATAATCTTCTTCTATTCCAGA
AATGCTTGAATCTCCAccattgaatttttcaaaaccacTGATCATGTATT
CATTGTGGTTCAGCTTATTTTCACCTCCTTTCTTGCAAACCAAGATATAA
CACTCCTGGTCTGCGTAATAGACTTGCGGAATTCTTCTTTCCGTTCGCCA
TTGATCAAATCCGGCTTTATATTCATCGCCGTAATCTCTTTTATACGGGA
ACAAACTCATTGTTTGATCCGGTATGGCCGGGTGAAGAACCGAAACGTGT
TTCGTGTTTTCGTGAGTCCAACCTTCGTCACGAATGTGGAGATAAACACG
TTCACCTTGTACGCTCTCTTGCAATCCCCCACTGCTGGAATAATGGCCCG
ATATAAAATCTGTACGCCATTTTGTGTTTGATGACATTTTGACTTTACAG
AATAAGTATTCATCATACAGAAACTCGATACCTCTCATCCTTTCAACTAA
GCCTTTATACCACTCACCATACGTTAGTGAGTTGTTAATTCTAATCTCTG
GATCTCCTTCTACAAATTGCTTGTATCCTTTTATTGCATATTCTTGGTTT
GATAAAAGCTGCAAATTGTGTTCCAATTCTTTTCGTTGGCATTCTTTTAT
CATCAATTCTTTCAACCGGTGGTCTAGTTTTAAGTTGGCGTTTTTTAGAG
ACGCATTCTCGCGGCCTAGGACGTCAGGATGTGCCATattaatattttgt
tttgtc Run BLAST on NCBI protein sequence of TCONS_00057020-protein >TCONS_00057020-protein ID=TCONS_00057020-protein|Name=TCONS_00057020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
TKQNINMAHPDVLGRENASLKNANLKLDHRLKELMIKECQRKELEHNLQL
LSNQEYAIKGYKQFVEGDPEIRINNSLTYGEWYKGLVERMRGIEFLYDEY
LFCKVKMSSNTKWRTDFISGHYSSSGGLQESVQGERVYLHIRDEGWTHEN
TKHVSVLHPAIPDQTMSLFPYKRDYGDEYKAGFDQWRTERRIPQVYYADQ
ECYILVCKKGGENKLNHNEYMISGFEKFNGGDSSISGIEEDYGSWYQGLI
KKMIFGQKYNFEKHVFRKIEVTKKELRGKSKLSLVSEPYEYLEPANMKIQ
PTSDDWDKESIKCVLVLHPNSTEKSLKMIWSGSEFICDGVDTIPQEYYVD
NKGFILVLCKNE Run BLAST on NCBI transcript from alignment at scaffold_284:619917..621272 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057020 ID=TCONS_00057020|Name=TCONS_00057020|organism=Clytia hemisphaerica|type=transcript|length=1356bp|location=Sequence derived from alignment at scaffold_284:619917..621272 (Clytia hemisphaerica)
gacaaaacaaaatattaatATGGCACATCCTGACGTCCTAGGCCGCGAGA
ATGCGTCTCTAAAAAACGCCAACTTAAAACTAGACCACCGGTTGAAAGAA
TTGATGATAAAAGAATGCCAACGAAAAGAATTGGAACACAATTTGCAGCT
TTTATCAAACCAAGAATATGCAATAAAAGGATACAAGCAATTTGTAGAAG
GAGATCCAGAGATTAGAATTAACAACTCACTAACGTATGGTGAGTGGTAT
AAAGGCTTAGTTGAAAGGATGAGAGGTATCGAGTTTCTGTATGATGAATA
CTTATTCTGTAAAGTCAAAATGTCATCAAACACAAAATGGCGTACAGATT
TTATATCGGGCCATTATTCCAGCAGTGGGGGATTGCAAGAGAGCGTACAA
GGTGAACGTGTTTATCTCCACATTCGTGACGAAGGTTGGACTCACGAAAA
CACGAAACACGTTTCGGTTCTTCACCCGGCCATACCGGATCAAACAATGA
GTTTGTTCCCGTATAAAAGAGATTACGGCGATGAATATAAAGCCGGATTT
GATCAATGGCGAACGGAAAGAAGAATTCCGCAAGTCTATTACGCAGACCA
GGAGTGTTATATCTTGGTTTGCAAGAAAGGAGGTGAAAATAAGCTGAACC
ACAATGAATACATGATCAgtggttttgaaaaattcaatggTGGAGATTCA
AGCATTTCTGGAATAGAAGAAGATTATGGGTCGTGGTATCAAGGCTTGAT
AAAGAAGAtgatttttggtcaaaaatataattttgagaaGCACGTTTTCC
GGAAGATTGAAGTCACCAAGAAAGAATTGAGAGGGAAAAGTAAGTTGTCA
TTGGTTAGTGAGCCTTATGAGTATCTGGAGCCAGCTAATATGAAGATTCA
ACCAACGTCGGATGATTGGGATAAAGAGAGCATTAAGTGTGTTTTGGTAT
TGCATCCGAATTCTACGGAGAAGTCATTGAAAATGATTTGGTCTGGTTCT
GAGTTTATTTGTGATGGGGTTGATACAATTCCCCAAGAGTATTACGTAGA
TAATAAAGGATTTATATTGGTATTGTGcaagaatgaatgaatgaatgaat
gaacgagAAAAACATTAATTGAATGAAAGTAAACCTTACGAAATCCTACA
AAAGGAAGGATCACTCGCTAAACGCTAAATGCctcgaaaatctttcaaaa
agatTTCTAGGAAGCGTCCTTCGTAAGGACtgcatacactacacaatatt
aTTGCCAGGCAATATATTGGTTATATTGAAGATGTATGGCTGAGTGCCAG
CAATATATTGATAAGGTATTcccaatatattgtcagctcgatttgcaata
tttcaa Coding sequence (CDS) from alignment at scaffold_284:619917..621272 >TCONS_00057020 ID=TCONS_00057020|Name=TCONS_00057020|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_284:619917..621272 (Clytia hemisphaerica)
acaaaacaaaatattaatATGGCACATCCTGACGTCCTAGGCCGCGAGAA
TGCGTCTCTAAAAAACGCCAACTTAAAACTAGACCACCGGTTGAAAGAAT
TGATGATAAAAGAATGCCAACGAAAAGAATTGGAACACAATTTGCAGCTT
TTATCAAACCAAGAATATGCAATAAAAGGATACAAGCAATTTGTAGAAGG
AGATCCAGAGATTAGAATTAACAACTCACTAACGTATGGTGAGTGGTATA
AAGGCTTAGTTGAAAGGATGAGAGGTATCGAGTTTCTGTATGATGAATAC
TTATTCTGTAAAGTCAAAATGTCATCAAACACAAAATGGCGTACAGATTT
TATATCGGGCCATTATTCCAGCAGTGGGGGATTGCAAGAGAGCGTACAAG
GTGAACGTGTTTATCTCCACATTCGTGACGAAGGTTGGACTCACGAAAAC
ACGAAACACGTTTCGGTTCTTCACCCGGCCATACCGGATCAAACAATGAG
TTTGTTCCCGTATAAAAGAGATTACGGCGATGAATATAAAGCCGGATTTG
ATCAATGGCGAACGGAAAGAAGAATTCCGCAAGTCTATTACGCAGACCAG
GAGTGTTATATCTTGGTTTGCAAGAAAGGAGGTGAAAATAAGCTGAACCA
CAATGAATACATGATCAgtggttttgaaaaattcaatggTGGAGATTCAA
GCATTTCTGGAATAGAAGAAGATTATGGGTCGTGGTATCAAGGCTTGATA
AAGAAGAtgatttttggtcaaaaatataattttgagaaGCACGTTTTCCG
GAAGATTGAAGTCACCAAGAAAGAATTGAGAGGGAAAAGTAAGTTGTCAT
TGGTTAGTGAGCCTTATGAGTATCTGGAGCCAGCTAATATGAAGATTCAA
CCAACGTCGGATGATTGGGATAAAGAGAGCATTAAGTGTGTTTTGGTATT
GCATCCGAATTCTACGGAGAAGTCATTGAAAATGATTTGGTCTGGTTCTG
AGTTTATTTGTGATGGGGTTGATACAATTCCCCAAGAGTATTACGTAGAT
AATAAAGGATTTATATTGGTATTGTGcaagaatgaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057020-exon-scaffold_284-1491911889:619917..621272 | TCONS_00057020-exon-scaffold_284-1491911889:619917..621272 | Clytia hemisphaerica | exon |
| TCONS_00057020-exon-scaffold_284-1510915933:619917..621272 | TCONS_00057020-exon-scaffold_284-1510915933:619917..621272 | Clytia hemisphaerica | exon |
| TCONS_00057020-exon-scaffold_284-1575043694:619917..621272 | TCONS_00057020-exon-scaffold_284-1575043694:619917..621272 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:619917..621272 . |
Blast
The following BLAST results are available for this feature:
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