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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057006 ID=TCONS_00057006|Name=TCONS_00057006|organism=Clytia hemisphaerica|type=transcript|length=1114bp
GATTAATGAAACGGATTCCAAAATGAACTCGGCACATTTGGATGAAAGGA
ATTTAGCTCATTGTTCCGCCACAGCAGCAATGAGCAACACTCAGCAAACT
GACAACGATGAGTTGACCAAACTGAAGGAAGAGCATGAGCGACAGATCCA
AACATTGAAGTTGGAACACAAAATTGAACTTTTGGAAATGAACAACAAAA
tgtcaaaagaagaaaatgacaaCAAAACCAAGATTTTGGAGTTGCAGAAA
GAAGTTCAATCGCTCAAGCACGAAAATGAATTAATGAAACTAAAGAGCAT
GCACGAGCTACAATCAAACAAAATGGAGGTTGACTCGAACTTAGAAAAAC
AAATGGCTGCTAAAGAACTCGAGTTTAAAAACCAACTGAGTGTAAAAGAC
AAggaaatatctgaaaaaattcagacacacagatttgaaatcactgagat
aaaaaatgaaatggctgaaaaaaaccAAGCACTACGTAATGAAAACGAAA
AGCTGAAATCAAAATTTGGCATGAACATTTCGCAGACTGAAGGGACACAA
CTCCACCCTCTGTTTTATACTGATATTGAACGCATGGAATGGGGAGCCAA
ACATTATTTTCTGGGAGTAGAATCAGATGTGATGATGTATGATTCATACC
AGCAATGGTATCAAAGTATCTACAATACGATGGGAGATCAACAACTCTAC
AAGTCcgaaaaatgtttctttttcaaacaatCTTTTGGAGAAACTTACGA
AAATGTGTATTTTGTTGCAAAGAAGAGAGGAAGTCAACGAATAGAGGTGT
CAAACGAATTTCAAGTTTCAGGATTAGACGATGAAAACTTAGataatgga
aaattttttctaCTTCATTCCAAAATATTGGCGAACTGCATCGAAAGTAA
ATTTAACAAGAAAAAGAATGATCATGATTGGTGGCAATTTGAGCAAGTCC
CTCAAGAGCTTTACGTTTGTGATCGTTCTCGTATGGCAGCAATTGTCTGT
TGGATTTCGAAAGAATAATTTTTCATGATGAACTTTATGAATTATGACCA
TTTCTTTGCTATTTCCTATTTCGTAAATACAATTGTACAGAAATTGATGA
TATCGATGTAGACG Run BLAST on NCBI protein sequence of TCONS_00057006-protein >TCONS_00057006-protein ID=TCONS_00057006-protein|Name=TCONS_00057006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
INETDSKMNSAHLDERNLAHCSATAAMSNTQQTDNDELTKLKEEHERQIQ
TLKLEHKIELLEMNNKMSKEENDNKTKILELQKEVQSLKHENELMKLKSM
HELQSNKMEVDSNLEKQMAAKELEFKNQLSVKDKEISEKIQTHRFEITEI
KNEMAEKNQALRNENEKLKSKFGMNISQTEGTQLHPLFYTDIERMEWGAK
HYFLGVESDVMMYDSYQQWYQSIYNTMGDQQLYKSEKCFFFKQSFGETYE
NVYFVAKKRGSQRIEVSNEFQVSGLDDENLDNGKFFLLHSKILANCIESK
FNKKKNDHDWWQFEQVPQELYVCDRSRMAAIVCWISKE Run BLAST on NCBI transcript from alignment at scaffold_284:378286..379399 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057006 ID=TCONS_00057006|Name=TCONS_00057006|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at scaffold_284:378286..379399 (Clytia hemisphaerica)
CGTCTACATCGATATCATCAATTTCTGTACAATTGTATTTACGAAATAGG
AAATAGCAAAGAAATGGTCATAATTCATAAAGTTCATCATGAAAAATTAT
TCTTTCGAAATCCAACAGACAATTGCTGCCATACGAGAACGATCACAAAC
GTAAAGCTCTTGAGGGACTTGCTCAAATTGCCACCAATCATGATCATTCT
TTTTCTTGTTAAATTTACTTTCGATGCAGTTCGCCAATATTTTGGAATGA
AGtagaaaaaattttccattatCTAAGTTTTCATCGTCTAATCCTGAAAC
TTGAAATTCGTTTGACACCTCTATTCGTTGACTTCCTCTCTTCTTTGCAA
CAAAATACACATTTTCGTAAGTTTCTCCAAAAGattgtttgaaaaagaaa
catttttcgGACTTGTAGAGTTGTTGATCTCCCATCGTATTGTAGATACT
TTGATACCATTGCTGGTATGAATCATACATCATCACATCTGATTCTACTC
CCAGAAAATAATGTTTGGCTCCCCATTCCATGCGTTCAATATCAGTATAA
AACAGAGGGTGGAGTTGTGTCCCTTCAGTCTGCGAAATGTTCATGCCAAA
TTTTGATTTCAGCTTTTCGTTTTCATTACGTAGTGCTTggtttttttcag
ccatttcattttttatctcagtgatttcaaatctgtgtgtctgaattttt
tcagatatttccTTGTCTTTTACACTCAGTTGGTTTTTAAACTCGAGTTC
TTTAGCAGCCATTTGTTTTTCTAAGTTCGAGTCAACCTCCATTTTGTTTG
ATTGTAGCTCGTGCATGCTCTTTAGTTTCATTAATTCATTTTCGTGCTTG
AGCGATTGAACTTCTTTCTGCAACTCCAAAATCTTGGTTTTGttgtcatt
ttcttcttttgacaTTTTGTTGTTCATTTCCAAAAGTTCAATTTTGTGTT
CCAACTTCAATGTTTGGATCTGTCGCTCATGCTCTTCCTTCAGTTTGGTC
AACTCATCGTTGTCAGTTTGCTGAGTGTTGCTCATTGCTGCTGTGGCGGA
ACAATGAGCTAAATTCCTTTCATCCAAATGTGCCGAGTTCATTTTGGAAT
CCGTTTCATTAATC Coding sequence (CDS) from alignment at scaffold_284:378286..379399 >TCONS_00057006 ID=TCONS_00057006|Name=TCONS_00057006|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_284:378286..379399 (Clytia hemisphaerica)
TTATTCTTTCGAAATCCAACAGACAATTGCTGCCATACGAGAACGATCAC
AAACGTAAAGCTCTTGAGGGACTTGCTCAAATTGCCACCAATCATGATCA
TTCTTTTTCTTGTTAAATTTACTTTCGATGCAGTTCGCCAATATTTTGGA
ATGAAGtagaaaaaattttccattatCTAAGTTTTCATCGTCTAATCCTG
AAACTTGAAATTCGTTTGACACCTCTATTCGTTGACTTCCTCTCTTCTTT
GCAACAAAATACACATTTTCGTAAGTTTCTCCAAAAGattgtttgaaaaa
gaaacatttttcgGACTTGTAGAGTTGTTGATCTCCCATCGTATTGTAGA
TACTTTGATACCATTGCTGGTATGAATCATACATCATCACATCTGATTCT
ACTCCCAGAAAATAATGTTTGGCTCCCCATTCCATGCGTTCAATATCAGT
ATAAAACAGAGGGTGGAGTTGTGTCCCTTCAGTCTGCGAAATGTTCATGC
CAAATTTTGATTTCAGCTTTTCGTTTTCATTACGTAGTGCTTggtttttt
tcagccatttcattttttatctcagtgatttcaaatctgtgtgtctgaat
tttttcagatatttccTTGTCTTTTACACTCAGTTGGTTTTTAAACTCGA
GTTCTTTAGCAGCCATTTGTTTTTCTAAGTTCGAGTCAACCTCCATTTTG
TTTGATTGTAGCTCGTGCATGCTCTTTAGTTTCATTAATTCATTTTCGTG
CTTGAGCGATTGAACTTCTTTCTGCAACTCCAAAATCTTGGTTTTGttgt
cattttcttcttttgacaTTTTGTTGTTCATTTCCAAAAGTTCAATTTTG
TGTTCCAACTTCAATGTTTGGATCTGTCGCTCATGCTCTTCCTTCAGTTT
GGTCAACTCATCGTTGTCAGTTTGCTGAGTGTTGCTCATTGCTGCTGTGG
CGGAACAATGAGCTAAATTCCTTTCATCCAAATGTGCCGAGTTCATTTTG
GAATCCGTTTCATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057006-exon-scaffold_284-1491911889:378286..379399 | TCONS_00057006-exon-scaffold_284-1491911889:378286..379399 | Clytia hemisphaerica | exon |
| TCONS_00057006-exon-scaffold_284-1510915933:378286..379399 | TCONS_00057006-exon-scaffold_284-1510915933:378286..379399 | Clytia hemisphaerica | exon |
| TCONS_00057006-exon-scaffold_284-1575043694:378286..379399 | TCONS_00057006-exon-scaffold_284-1575043694:378286..379399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:378286..379399 . |
Blast
The following BLAST results are available for this feature:
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