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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057003 ID=TCONS_00057003|Name=TCONS_00057003|organism=Clytia hemisphaerica|type=transcript|length=1154bp
TATCCCTCGTGTGTACAGACTTGTTAGAAGCAAACTAACTTTCTTAAATG
ATGAATTAGGtccataagatcacaaaaacgagtggCGAGGCAAAGAAAAT
AGCTGAAAAATTACGTCATTGATGTCAACGCAAAttaaaaaatcgtaaaa
atcgAAACAAATTGAGGAGGATGCACTCATaccttcacgcatagatattg
gacagTAATTCTATGTACAGAGTAAAGCGGACAATTTTGTCAACAAAATC
GACGGGAAGGGACAGAGAAGGATTCTATTCATGAAAAAGTTTGAGAACTC
ATATTCGAAATTCAACTATCTATTCGAcccatagaccttttcataaatta
cgtcacgaacatcacttgcctcgtattcaaacaattaccatggtgattat
gtcccttgagacattaaatgatttctttatgaatagaaagtagttttaat
aaaatctgctgggagttaatcaccaaggcaataatttcaaaacgaggcaa
gtgatgttcgtgacgtaatttatgaaaaggtctattgtatcGTAGAATTA
CGTAAAAAGCTCCACTTCTAGAAGAATAGCCAGTTAAGCCAGGTTCACAG
TCAGCAGACACTACCTTATCAGGAATAATggatagaaataaataaatcaa
aattatttttcctgaCCTACCgtacttaaataaaaaaatccttaTTGTTG
AGGTATAGCTACTTTGAAAAAGCTGGCGTTTTATCAACAAACTAGTTTGT
TACAAAGTCTTTTTTTGTCTCTCaaattatttggaaattttaattttcag
cgGAAATGTTTTCTTTGGGTTGTTTTAGGCAAGTGCAGTCTAAACTTTTC
TACAGCGTGTAAATAAGCCTAAAATGCAACTTAAATATCACCATAATGCA
GGTGGCATTTAGTGCTagctatttatttttcaaatgacgatgacgtcatc
gatgacgtcatttttgagcaatttttctttataggTTCTTAAATACTGAT
ATTCAGGTATATGTTGTGATATTGAAATCCTTagataaatatctttcatt
tgagtCATATTTGAGCTtgtaattttcactttcattttcaggctCTAGCA
AAAGTGATGCGGtcacatggggaccagcaaaatggtcaaaatttttctca
ctaC Run BLAST on NCBI transcript from alignment at scaffold_284:217553..218706 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057003 ID=TCONS_00057003|Name=TCONS_00057003|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at scaffold_284:217553..218706 (Clytia hemisphaerica)
GtagtgagaaaaattttgaccattttgctggtccccatgtgaCCGCATCA
CTTTTGCTAGagcctgaaaatgaaagtgaaaattacaAGCTCAAATATGa
ctcaaatgaaagatatttatctAAGGATTTCAATATCACAACATATACCT
GAATATCAGTATTTAAGAAcctataaagaaaaattgctcaaaaatgacgt
catcgatgacgtcatcgtcatttgaaaaataaatagctAGCACTAAATGC
CACCTGCATTATGGTGATATTTAAGTTGCATTTTAGGCTTATTTACACGC
TGTAGAAAAGTTTAGACTGCACTTGCCTAAAACAACCCAAAGAAAACATT
TCcgctgaaaattaaaatttccaaataatttGAGAGACAAAAAAAGACTT
TGTAACAAACTAGTTTGTTGATAAAACGCCAGCTTTTTCAAAGTAGCTAT
ACCTCAACAAtaaggatttttttatttaagtacGGTAGGtcaggaaaaat
aattttgatttatttatttctatccATTATTCCTGATAAGGTAGTGTCTG
CTGACTGTGAACCTGGCTTAACTGGCTATTCTTCTAGAAGTGGAGCTTTT
TACGTAATTCTACgatacaatagaccttttcataaattacgtcacgaaca
tcacttgcctcgttttgaaattattgccttggtgattaactcccagcaga
ttttattaaaactactttctattcataaagaaatcatttaatgtctcaag
ggacataatcaccatggtaattgtttgaatacgaggcaagtgatgttcgt
gacgtaatttatgaaaaggtctatgggTCGAATAGATAGTTGAATTTCGA
ATATGAGTTCTCAAACTTTTTCATGAATAGAATCCTTCTCTGTCCCTTCC
CGTCGATTTTGTTGACAAAATTGTCCGCTTTACTCTGTACATAGAATTAc
tgtccaatatctatgcgtgaaggtATGAGTGCATCCTCCTCAATTTGTTT
cgatttttacgattttttaaTTTGCGTTGACATCAATGACGTAATTTTTC
AGCTATTTTCTTTGCCTCGccactcgtttttgtgatcttatggaCCTAAT
TCATCATTTAAGAAAGTTAGTTTGCTTCTAACAAGTCTGTACACACGAGG
GATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057003-exon-scaffold_284-1491911889:217553..218706 | TCONS_00057003-exon-scaffold_284-1491911889:217553..218706 | Clytia hemisphaerica | exon |
| TCONS_00057003-exon-scaffold_284-1510915933:217553..218706 | TCONS_00057003-exon-scaffold_284-1510915933:217553..218706 | Clytia hemisphaerica | exon |
| TCONS_00057003-exon-scaffold_284-1575043694:217553..218706 | TCONS_00057003-exon-scaffold_284-1575043694:217553..218706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:217553..218706 . |
Blast
The following BLAST results are available for this feature:
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