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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057002 ID=TCONS_00057002|Name=TCONS_00057002|organism=Clytia hemisphaerica|type=transcript|length=2369bp
gctattttatgcttgagacgtatgttcTGAATGTTGAATCTaatctgaat
taggatcctgaCCTAtaaatgctgtaagaatattttaagatgatcTTTCC
AAAacagttaagaatatccatgatgaaatggatttacaccattcttataa
aaaaacgtgtatctgtCTAATGTCTCAATATTATCAAGTGTTTCAGTGTG
GGGCCCACCCTTAGGGTGGTAGGATCCGTAGCATTTTTCTTGGGACACAA
CCATATGtgtataaaatttttttgaatttgaattataaacgaaaatgatt
gataccatcggatagagcatgaaattctaagcaaaaaagtatactacaaT
TCTTGTACTCAAACATAGAAATACAGGcttttcaagtttaaaattcTGTC
AGTTAAAATAACTGCTGACGTCAAATTTTGTCCAGAAAACGTAATAGATT
CCAcataatttcaaactttaaacGACCATACATATCTTTTGATGTGTTTG
AATATAAaacttgtatactttttttttgctcagaatttcatgctctgtcc
aaaaaatcgtcattttttttactctttttgctATGGATCCTAAGGGTTGT
GCGTGTTCCGGATtcttaaaaatactaaaataatAAGGCGATACCAATTT
GATTCGTTGTTTTAAGTACCCGACCGACccaaattgattttggtagtaca
ttctttattttcattacgTACAGAgcgccaaattttcaaaattttggtag
ttttaccaaggttttgagaactttatgttcaatttttcattttatccatg
aatttgagttttttatttattatttcgcCTTATagtcaagatgtagtagt
tttgttaccttttaggagattttataggtgaaattctacttttattttat
tttttcgccgaccgaccctcttttttggatAGCTTGGCCCAAAAAACAAC
GAATTAAATCGGCCTCGCCTAAAGGATAAATAAAATATTGCAGTTACAAA
TAATAGTTAGTTCGTCGCGTacacccttgtgtcacagacccactgggacc
ctagccccactgggaaatttggccaaaatttcgaccccggtgggaaaata
ccagCCCCATTGGGGTATTGgttttgattttatccccattcgaaattcag
tgtttaaaaattgcactccaaactatccccactggattttttaaccttgg
aacaatagaacttCTCTCCCCATTGAtattatccccactgaggaaaaaag
ttccaccacggctgtgagaaaggggtgttcgCGTGGacaatttgtaaagt
ttatataTCGTTTAAATGTCATAAAAAAGAATAAGCTAGCAGGGTTGACC
TCCTTAGGATTTCAAACTTTACTACCTCATTCCCAAAGGAACCTATCCAT
TATTTCGATTCGACAGATTTATCTCGAaactgcaaaattaaattcctgaa
ATGAAGTTTAAAAACATCCAACATGCAACATTGTAATTCATTCCATAAtc
gaaaatagcaaaaaaacaacaaaaatcaatataacttttcgaccgtagtc
gcgcgggtatttttttgtccgctttatctaACTAAAACCGGCCCAGTCCT
TTTTCGCATTTTTTTGCAATGCGTCAAAAAATGATtaggacggttttagt
gggataaaggggacaaaaaaatgcccgcgcgactacggtcgaaaaggtgt
atataaCATAGTTACAAAGACAGTTTCCTTATATACCACTTGATCTTGAT
ATGGCCGCTCACTCAAAATTTTGGGTCTTGTCAATTCAGTAGGGTGAACA
TACAATAAAGCTCATAATACCTACTGATGAAAAAGGCAAATTGCCTTGTG
CTCTAATTTAATTCTAGAACGTAGAGTTTTTACTGGATCTCAGGATTCAA
AAGCTCACAAATCTTtttccaataaggctcagaaaaTAGTCCCTCCAAAT
TCAAATACCCAATGAAATAATATGGGAGAATTAAAACAATTACCATCAAA
CTTCAATTCTTTTCGATTGGTTGCGATTTGGTCAATGATTTGCTGAAAAA
AAAGAGTACATCAATATTCATGAGTTTGCGAGAACGAATACACCTATTGA
TAAATTACAAAATATTAATAAGATACACCTTTAGAGCCATTGACTTCAGA
CCCACTCTCTTGGacaaacaaatgaaatctgaccttttgtttttgaatta
catcaatcttacgcgttcgaaaaaCAGACagtgccagggtattatctagt
gCTTTcaataagcataaaaaagctgataatacgtaGGGAACGAAGTTGCG
CGCACTCGAGGCGTTCAAAATCAGAAATGGCGCTGATTTTTTGGAGAATT
CGTAAGAAGTCGTTGTCCT Run BLAST on NCBI transcript from alignment at scaffold_284:214830..217198 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057002 ID=TCONS_00057002|Name=TCONS_00057002|organism=Clytia hemisphaerica|type=transcript|length=2369bp|location=Sequence derived from alignment at scaffold_284:214830..217198 (Clytia hemisphaerica)
AGGACAACGACTTCTTACGAATTCTCCAAAAAATCAGCGCCATTTCTGAT
TTTGAACGCCTCGAGTGCGCGCAACTTCGTTCCCtacgtattatcagctt
ttttatgcttattgAAAGcactagataataccctggcactGTCTGttttt
cgaacgcgtaagattgatgtaattcaaaaacaaaaggtcagatttcattt
gtttgtCCAAGAGAGTGGGTCTGAAGTCAATGGCTCTAAAGGTGTATCTT
ATTAATATTTTGTAATTTATCAATAGGTGTATTCGTTCTCGCAAACTCAT
GAATATTGATGTACTCTTTTTTTTCAGCAAATCATTGACCAAATCGCAAC
CAATCGAAAAGAATTGAAGTTTGATGGTAATTGTTTTAATTCTCCCATAT
TATTTCATTGGGTATTTGAATTTGGAGGGACTAttttctgagccttattg
gaaaAAGATTTGTGAGCTTTTGAATCCTGAGATCCAGTAAAAACTCTACG
TTCTAGAATTAAATTAGAGCACAAGGCAATTTGCCTTTTTCATCAGTAGG
TATTATGAGCTTTATTGTATGTTCACCCTACTGAATTGACAAGACCCAAA
ATTTTGAGTGAGCGGCCATATCAAGATCAAGTGGTATATAAGGAAACTGT
CTTTGTAACTATGttatatacaccttttcgaccgtagtcgcgcgggcatt
tttttgtcccctttatcccactaaaaccgtcctaATCATTTTTTGACGCA
TTGCAAAAAAATGCGAAAAAGGACTGGGCCGGTTTTAGTtagataaagcg
gacaaaaaaatacccgcgcgactacggtcgaaaagttatattgatttttg
ttgtttttttgctattttcgaTTATGGAATGAATTACAATGTTGCATGTT
GGATGTTTTTAAACTTCATttcaggaatttaattttgcagttTCGAGATA
AATCTGTCGAATCGAAATAATGGATAGGTTCCTTTGGGAATGAGGTAGTA
AAGTTTGAAATCCTAAGGAGGTCAACCCTGCTAGCTTATTCTTTTTTATG
ACATTTAAACGAtatataaactttacaaattgtCCACGcgaacacccctt
tctcacagccgtggtggaacttttttcctcagtggggataataTCAATGG
GGAGAGaagttctattgttccaaggttaaaaaatccagtggggatagttt
ggagtgcaatttttaaacactgaatttcgaatggggataaaatcaaaacC
AATACCCCAATGGGGctggtattttcccaccggggtcgaaattttggcca
aatttcccagtggggctagggtcccagtgggtctgtgacacaagggtgtA
CGCGACGAACTAACTATTATTTGTAACTGCAATATTTTATTTATCCTTTA
GGCGAGGCCGATTTAATTCGTTGTTTTTTGGGCCAAGCTatccaaaaaag
agggtcggtcggcgaaaaaataaaataaaagtagaatttcacctataaaa
tctcctaaaaggtaacaaaactactacatcttgactATAAGgcgaaataa
taaataaaaaactcaaattcatggataaaatgaaaaattgaacataaagt
tctcaaaaccttggtaaaactaccaaaattttgaaaatttggcgcTCTGT
AcgtaatgaaaataaagaatgtactaccaaaatcaatttggGTCGGTCGG
GTACTTAAAACAACGAATCAAATTGGTATCGCCTTattattttagtattt
ttaagaATCCGGAACACGCACAACCCTTAGGATCCATagcaaaaagagta
aaaaaaatgacgattttttggacagagcatgaaattctgagcaaaaaaaa
agtatacaagttTTATATTCAAACACATCAAAAGATATGTATGGTCgttt
aaagtttgaaattatgTGGAATCTATTACGTTTTCTGGACAAAATTTGAC
GTCAGCAGTTATTTTAACTGACAgaattttaaacttgaaaagCCTGTATT
TCTATGTTTGAGTACAAGAAttgtagtatacttttttgcttagaatttca
tgctctatccgatggtatcaatcattttcgtttataattcaaattcaaaa
aaattttatacaCATATGGTTGTGTCCCAAGAAAAATGCTACGGATCCTA
CCACCCTAAGGGTGGGCCCCACACTGAAACACTTGATAATATTGAGACAT
TAGacagatacacgtttttttataagaatggtgtaaatccatttcatcat
ggatattcttaactgtTTTGGAAAgatcatcttaaaatattcttacagca
tttaTAGGtcaggatcctaattcagattAGATTCAACATTCAgaacatac
gtctcaagcataaaatagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057002-exon-scaffold_284-1491911889:214830..217198 | TCONS_00057002-exon-scaffold_284-1491911889:214830..217198 | Clytia hemisphaerica | exon |
| TCONS_00057002-exon-scaffold_284-1510915933:214830..217198 | TCONS_00057002-exon-scaffold_284-1510915933:214830..217198 | Clytia hemisphaerica | exon |
| TCONS_00057002-exon-scaffold_284-1575043694:214830..217198 | TCONS_00057002-exon-scaffold_284-1575043694:214830..217198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:214830..217198 . |
Blast
The following BLAST results are available for this feature:
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