TCONS_00057000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057000
Unique NameTCONS_00057000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057000 ID=TCONS_00057000|Name=TCONS_00057000|organism=Clytia hemisphaerica|type=transcript|length=202bp
cccctatattgttggaatattgcaaatcgagttGACAATATATTGGGGAT
ACCTTACCAATATATTGCTggcactcagcaatatatcgTCAATATATTGC
CAATATATTGCCtggcaatatattgtgtagtgtatgtagccctttaaaTT
AGCACTATCAATGCTGGTGAAAAATATCTTAAACGAAAAATTTCATTGAG
TT
Run BLAST on NCBI

transcript from alignment at scaffold_284:198498..198699

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057000 ID=TCONS_00057000|Name=TCONS_00057000|organism=Clytia hemisphaerica|type=transcript|length=202bp|location=Sequence derived from alignment at scaffold_284:198498..198699 (Clytia hemisphaerica)
AACTCAATGAAATTTTTCGTTTAAGATATTTTTCACCAGCATTGATAGTG
CTAAtttaaagggctacatacactacacaatatattgccaGGCAATATAT
TGGCAATATATTGAcgatatattgctgagtgccAGCAATATATTGGTAAG
GTATCCCCAATATATTGTCaactcgatttgcaatattccaacaatatagg
gg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035895XLOC_035895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057000-exon-scaffold_284-1491911889:198498..198699TCONS_00057000-exon-scaffold_284-1491911889:198498..198699Clytia hemisphaericaexon
TCONS_00057000-exon-scaffold_284-1510915933:198498..198699TCONS_00057000-exon-scaffold_284-1510915933:198498..198699Clytia hemisphaericaexon
TCONS_00057000-exon-scaffold_284-1575043694:198498..198699TCONS_00057000-exon-scaffold_284-1575043694:198498..198699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:198498..198699 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61938	0	1.83355	0	0	0	0	0	0	1.6903	0	0	6.462	3.35543	0.919539	0.986806	1.21566	1.24602	1.72144	7.20545	7.82855	4.58219	0	0	3.47732	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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