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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056994 ID=TCONS_00056994|Name=TCONS_00056994|organism=Clytia hemisphaerica|type=transcript|length=2210bp
attttgcaatttcttgaattaattttcagctttattcaaatttgatcctt
acaaataactagtgtgtaaaatatattgtagtggaaattcaatattatta
tttttttaattttagcaaaaatagggtcggtcgggcccgtagaacaacaa
attaaattggtctcgccttatacAAATTTAGATTGTACAAATATGTATAT
gagttttcaaatgaaattgaTCCTGCCAAACGATGAAATCATTCATGGAA
AGATTTCCAGGGCTGATTGTCAAATCCAACCGAGAGGTCTTAAGAAGTTA
ATACTgctgtttgttttggttgtcAACTTACAATAAACCTTTTTATCGGC
GATCTAAAAAATATCAGCAATCTGAAGGCCGGTATCCACtctcgcgcgaa
atgggcgacagtttttttctcaaccttttttgcctaaagaaaagattact
agtttgagtaaagaaagtGATAAAGTCATAAAAGAGTTTCGcgtgaacaa
aaaaaagttaaacttttttcaaccgttacgtcaattttgaccaatggaat
tgcttcattctTCAACCgacaatgaccttacaaaaacgttaaaaaaattT
CGCTAATCTGGcgtgaaagtggagaccggccttgaTGGGTTAAAAACAGT
AcgatatatcttgtattttacatgtgcAAAGTATAacttgacgaaaagat
gttgttgcatgtCACTTTGCTAGTGCCTTGCGCTTTTTTCCAAcgcaaaa
agtgcattttttataTCACCGATTTTAGTCGTTCCGTAGGTTTCTGCAGG
TCAATTATCTCAAACTACCTGTCAATAGTTTTTAATTACCCAGCAAAAGA
CTGTTAAATTTTCTTCATGATGATACGTTCTTGTTTTGGTGTGGCAACCG
ATGTTGTATCAACGGAATCAGCCAGATTGGTATGGTGTCCACTCGACGAT
GACACGCCCTCTTTTTTACGTTGTTTTTTGACTTCCTCCTCGCAACGATT
ACGGAAGAAATAAATGATACTATTCATACCGGAATTAGATACTAAANCAA
CGATTACGGAAGAAATAAATAATACTATTCATACCGGAATTAGATACTAA
AATCACATTGACCCAGAATTCTACTTTACCGTAAATTATTCGATTTAAGA
CGTACGGTACGGTGAACATTATAAATGATCCGGCGACAAAAAGACAGACC
AGGTTTActttattatgtgaagttttctGTTGGTGCGGTAGTTTAGCTTT
CTTTTTAGCTAGCCGCACTCTGTTGATAATTAGTGAATATATGAGAACTA
AGAGGATATCAGCGCCTAAAATGAATCCAGATAAAAGTAACTTCATGAAT
TTTCTGTACACTAGTATTTTGTCTGCTAGTAATATTTTACGGAATTGAAG
CGGCTTTTCGGAGGGCAGTTGCCGTGTAGTCCGTGGGCGGTTCGTTCGAT
TACGTCCACCATCAGTGAGGTTTGATATTATATGGTGTATTGTAATGGGT
GGAGCTGTTGTGAAGGTTGATAAGGGCGATAAGGGGGTATTTGTGAGGGC
GGTGGTGGTATTATGATTATCGTCTTCATCTTCAACTAATTCAAATACGT
ATTGATCTTGAAATAAATGTCCTTTAGCATTTATATAATGTAATGCTAAA
GTCACTACAATCCCAAGCATCCATATCATGGATAAGATTATATAGACTTT
CTTACGAGTCATGAATATGTTGTGTTTAATGGGGCGTACAATAGCCCATA
GTCTATCCAAAGCGAtaaaaacgagatgaaaaatggAACACAAAACGAAT
AAGAAATACGTGCTGGTTGTTAATTCAAGGACTACCTCATTTTGCCATTC
CCCGAGAACGACCACACATATGGCTCCATTGGACAGGCCAAATAACAGGT
CCGAAAATGACAAACTGAGTAGAACTACTTcgtaaattttcttctttcgc
CGTATACGTAAAATCATGATGATTTCCGCCACGTTCAATAAAGCTACGAT
TAAACCGATCGCGAGATCGATAGACCGCTTAATCTTTTCCTCTTCCATTC
TTTGTAGTGTTGGAGGAGGGCGTCACCGGCTGTCTCTTGGTAGGAGGGTG
CTAGTTAAAGCCAGTAATTGAGTAGGATGTAGCCGTCCATGCCCATCACC
TTTGAACGGTTGAAAAGTTGTGTCCATTAAATGTTGTTAATATCAAGTCT
TTGATTTGCG Run BLAST on NCBI protein sequence of TCONS_00056994-protein >TCONS_00056994-protein ID=TCONS_00056994-protein|Name=TCONS_00056994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MEEEKIKRSIDLAIGLIVALLNVAEIIMILRIRRKKKIYEVVLLSLSFSD
LLFGLSNGAICVVVLGEWQNEVVLELTTSTYFLFVLCSIFHLVFIALDRL
WAIVRPIKHNIFMTRKKVYIILSMIWMLGIVVTLALHYINAKGHLFQDQY
VFELVEDEDDNHNTTTALTNTPLSPLSTFTTAPPITIHHIISNLTDGGRN
RTNRPRTTRQLPSEKPLQFRKILLADKILVYRKFMKLLLSGFILGADILL
VLIYSLIINRVRLAKKKAKLPHQQKTSHNKVNLVCLFVAGSFIMFTVPYV
LNRIIYGKVEFWVNVILVSNSGMNSIIYFFRNRXFSI Run BLAST on NCBI transcript from alignment at scaffold_284:110316..112525 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056994 ID=TCONS_00056994|Name=TCONS_00056994|organism=Clytia hemisphaerica|type=transcript|length=2210bp|location=Sequence derived from alignment at scaffold_284:110316..112525 (Clytia hemisphaerica)
CGCAAATCAAAGACTTGATATTAACAACATTTAATGGACACAACTTTTCA
ACCGTTCAAAGGTGATGGGCATGGACGGCTACATCCTACTCAATTACTGG
CTTTAACTAGCACCCTCCTACCAAGAGACAGCCGGTGACGCCCTCCTCCA
ACACTACAAAGAATGGAAGAGGAAAAGATTAAGCGGTCTATCGATCTCGC
GATCGGTTTAATCGTAGCTTTATTGAACGTGGCGGAAATCATCATGATTT
TACGTATACGgcgaaagaagaaaatttacgAAGTAGTTCTACTCAGTTTG
TCATTTTCGGACCTGTTATTTGGCCTGTCCAATGGAGCCATATGTGTGGT
CGTTCTCGGGGAATGGCAAAATGAGGTAGTCCTTGAATTAACAACCAGCA
CGTATTTCTTATTCGTTTTGTGTTccatttttcatctcgtttttaTCGCT
TTGGATAGACTATGGGCTATTGTACGCCCCATTAAACACAACATATTCAT
GACTCGTAAGAAAGTCTATATAATCTTATCCATGATATGGATGCTTGGGA
TTGTAGTGACTTTAGCATTACATTATATAAATGCTAAAGGACATTTATTT
CAAGATCAATACGTATTTGAATTAGTTGAAGATGAAGACGATAATCATAA
TACCACCACCGCCCTCACAAATACCCCCTTATCGCCCTTATCAACCTTCA
CAACAGCTCCACCCATTACAATACACCATATAATATCAAACCTCACTGAT
GGTGGACGTAATCGAACGAACCGCCCACGGACTACACGGCAACTGCCCTC
CGAAAAGCCGCTTCAATTCCGTAAAATATTACTAGCAGACAAAATACTAG
TGTACAGAAAATTCATGAAGTTACTTTTATCTGGATTCATTTTAGGCGCT
GATATCCTCTTAGTTCTCATATATTCACTAATTATCAACAGAGTGCGGCT
AGCTAAAAAGAAAGCTAAACTACCGCACCAACagaaaacttcacataata
aagTAAACCTGGTCTGTCTTTTTGTCGCCGGATCATTTATAATGTTCACC
GTACCGTACGTCTTAAATCGAATAATTTACGGTAAAGTAGAATTCTGGGT
CAATGTGATTTTAGTATCTAATTCCGGTATGAATAGTATTATTTATTTCT
TCCGTAATCGTTGNTTTAGTATCTAATTCCGGTATGAATAGTATCATTTA
TTTCTTCCGTAATCGTTGCGAGGAGGAAGTCAAAAAACAACGTAAAAAAG
AGGGCGTGTCATCGTCGAGTGGACACCATACCAATCTGGCTGATTCCGTT
GATACAACATCGGTTGCCACACCAAAACAAGAACGTATCATCATGAAGAA
AATTTAACAGTCTTTTGCTGGGTAATTAAAAACTATTGACAGGTAGTTTG
AGATAATTGACCTGCAGAAACCTACGGAACGACTAAAATCGGTGAtataa
aaaatgcactttttgcgTTGGAAAAAAGCGCAAGGCACTAGCAAAGTGac
atgcaacaacatcttttcgtcaagtTATACTTTgcacatgtaaaatacaa
gatatatcgTACTGTTTTTAACCCAtcaaggccggtctccactttcacgC
CAGATTAGCGAaatttttttaacgtttttgtaaggtcattgtcGGTTGAa
gaatgaagcaattccattggtcaaaattgacgtaacggttgaaaaaagtt
taacttttttttgttcacgCGAAACTCTTTTATGACTTTATCactttctt
tactcaaactagtaatcttttctttaggcaaaaaaggttgagaaaaaaac
tgtcgcccatttcgcgcgagaGTGGATACCGGCCTTCAGATTGCTGATAT
TTTTTAGATCGCCGATAAAAAGGTTTATTGTAAGTTgacaaccaaaacaa
acagcAGTATTAACTTCTTAAGACCTCTCGGTTGGATTTGACAATCAGCC
CTGGAAATCTTTCCATGAATGATTTCATCGTTTGGCAGGAtcaatttcat
ttgaaaactcATATACATATTTGTACAATCTAAATTTgtataaggcgaga
ccaatttaatttgttgttctacgggcccgaccgaccctatttttgctaaa
attaaaaaaataataatattgaatttccactacaatatattttacacact
agttatttgtaaggatcaaatttgaataaagctgaaaattaattcaagaa
attgcaaaat Coding sequence (CDS) from alignment at scaffold_284:110316..112525 >TCONS_00056994 ID=TCONS_00056994|Name=TCONS_00056994|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_284:110316..112525 (Clytia hemisphaerica)
ATGGAAGAGGAAAAGATTAAGCGGTCTATCGATCTCGCGATCGGTTTAAT
CGTAGCTTTATTGAACGTGGCGGAAATCATCATGATTTTACGTATACGgc
gaaagaagaaaatttacgAAGTAGTTCTACTCAGTTTGTCATTTTCGGAC
CTGTTATTTGGCCTGTCCAATGGAGCCATATGTGTGGTCGTTCTCGGGGA
ATGGCAAAATGAGGTAGTCCTTGAATTAACAACCAGCACGTATTTCTTAT
TCGTTTTGTGTTccatttttcatctcgtttttaTCGCTTTGGATAGACTA
TGGGCTATTGTACGCCCCATTAAACACAACATATTCATGACTCGTAAGAA
AGTCTATATAATCTTATCCATGATATGGATGCTTGGGATTGTAGTGACTT
TAGCATTACATTATATAAATGCTAAAGGACATTTATTTCAAGATCAATAC
GTATTTGAATTAGTTGAAGATGAAGACGATAATCATAATACCACCACCGC
CCTCACAAATACCCCCTTATCGCCCTTATCAACCTTCACAACAGCTCCAC
CCATTACAATACACCATATAATATCAAACCTCACTGATGGTGGACGTAAT
CGAACGAACCGCCCACGGACTACACGGCAACTGCCCTCCGAAAAGCCGCT
TCAATTCCGTAAAATATTACTAGCAGACAAAATACTAGTGTACAGAAAAT
TCATGAAGTTACTTTTATCTGGATTCATTTTAGGCGCTGATATCCTCTTA
GTTCTCATATATTCACTAATTATCAACAGAGTGCGGCTAGCTAAAAAGAA
AGCTAAACTACCGCACCAACagaaaacttcacataataaagTAAACCTGG
TCTGTCTTTTTGTCGCCGGATCATTTATAATGTTCACCGTACCGTACGTC
TTAAATCGAATAATTTACGGTAAAGTAGAATTCTGGGTCAATGTGATTTT
AGTATCTAATTCCGGTATGAATAGTATTATTTATTTCTTCCGTAATCGTT
GNTTTAGTATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056994-exon-scaffold_284-1491911889:110316..112525 | TCONS_00056994-exon-scaffold_284-1491911889:110316..112525 | Clytia hemisphaerica | exon |
| TCONS_00056994-exon-scaffold_284-1510915933:110316..112525 | TCONS_00056994-exon-scaffold_284-1510915933:110316..112525 | Clytia hemisphaerica | exon |
| TCONS_00056994-exon-scaffold_284-1575043694:110316..112525 | TCONS_00056994-exon-scaffold_284-1575043694:110316..112525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:110316..112525 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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