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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056979 ID=TCONS_00056979|Name=TCONS_00056979|organism=Clytia hemisphaerica|type=transcript|length=1640bp
CTCTTCacctttcattttcctagattagtgattcaaacaaaaaaataaga
tgaaaAAGAAAGCGCCGCCAACAACCGATACCACAAGGAAAATGAACCCT
GTGGTCAGTGGTATGATGATGACTGGCACCATCTTCGGCTCCGCTACAAT
ATTACTCCCTGGGGTTGTGTCCCAAATCAGTACCACATCATATTTCTTTA
TTTTGTTCTTCTATGTGGCACTGGCTTATGCATGTACGATGTTTGCTAAT
TATGTATTTGGTGATTTGTTAAGCAAAACCCTGGAAAATGACGAATCGTT
GCGGAGACCATTACAATATTGTACTGAACGTGCATTTGGAAAGAATTCAT
GGCTCAATGTACTTTTTACTTGCATTCAAATCACCAGCAACCTTTCCCTG
GTTGTCTCTGCTACAATGATTGTTgctaccattttagaatctgCATTGCC
AATCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCATTTGGCTAC
TTATCACATTTTTGGGACTGCTACCAACCCAAATGATCGGTTCTTTCAAA
GAATTGGGTTTCGTTGGACCATCAGCTGTTTTTTTCAGTGTGACTGCATT
ATTCTTGGTTATTGTATCAGGATACATAGTGCAAGCAAATAATATCTTGC
CGCCAGACCCTTTAACAAAGAGTGTCTTAGAGAAAGCACTACCGTGGATA
GACTACACACCACCATACACATTTTTCTCAGTTTCTGGCACTATATTTTT
CTCACTTGCTGGATATATGTTGGTATTACCGAGCCTGGCAGCTATAGATC
CAGATACTGGATCTCTTAATAGGACAGTCACAACATCAGCTGTATGTGTT
TATATATTGTACTGTGTAGCAGGCTATGTGACCTACTTATTATTCAACGA
TTACGTCATCGAAGTTTCGATTGTTGATACGATACAAAGGatagcgaagg
gagcagaaaaTTCTACTTTGTTGGTATTTGCCAAGATCATTGAAGCTCTT
TTGGTGCTCCACTTTGTTTGTGCTATATGTCTTGCTGGTAATCCGGTTTA
CTTGTACTTGGAATCCGTCTTCACAGTTCCGAATGAATTTTGTTGGAAGC
GGTTTATACTACGAACTCTCATTTTTGGCGCTTGCAATTTGATTGTCATT
GTATTTCCAAAACTTTCGCAATTCGTATCTTGGCTTGGTGGAGGATTTTT
GTTCAATCTGGCGACATTCGTTCCAATCATTTTGTATTTATGTTTATGTG
AAACTTCACTGACGACCAAAGTGTTCTGTTGGTTTTTATTCACTTTATCG
CTGGTGATTGCTATCGGAGTGAATTATGTGGGACTGGCTGTTCTTTTATA
AAGGAATTATAAAGGAAACTTACAACTTATGAAATCTTTAaactattaac
ttttcaaaataaagaaaatttattcaattcttgatttaaatttttagctt
atCTTCGCTTTATTTGGTTAATTAAAACTGAGTTTTAGTTCTTAGGACTT
TAAGTAGCGCTGTACATTCGATTTAGCGATCTTGCTGCCCTTTCATCATT
TGATAATTTAGATATCAAGCCTTTTAAAGATTAATATAAATACATTTCTA
GATAAAGTCTAATTTTTTCGTGTGTAAAAGCATACAGTAG Run BLAST on NCBI transcript from alignment at scaffold_284:1346140..1354307- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056979 ID=TCONS_00056979|Name=TCONS_00056979|organism=Clytia hemisphaerica|type=transcript|length=8168bp|location=Sequence derived from alignment at scaffold_284:1346140..1354307- (Clytia hemisphaerica)
CTCTTCACCTTTCATTTTCCTAGATTAGTGATTCAAACAAAAAAATAAGA
TGAAAAAGAAAGCGCCGCCAACAACCGATACCACAAGGAAAATGAACCCT
GTGGTCAGTGGTATGATGATGACTGGCACCATCTTCGGCTCCGCTACAAT
ATTACTCCCTGGGGTTGTGTCCCAAATCAGTACCACATCATATTTCTTTA
TTTTGTTCTTCTATGTGGCACTGGCTTATGCATGTACGATGTTTGCTAAT
TATGTATTTGGTGATTTGTTAAGCAAAACCCTGGAAAATGACGAATCGTT
GCGGAGACCATTACAATATTGTACTGAACGTGCATTTGGAAAGAATTCAT
GGCTCAATGTACTTTTTACTTGCATTCAAATCACCAGCAACCTTTCCCTG
GTTGTCTCTGCTACAATGATTGTTGCTACCATTTTAGAATCTGCATTGCC
AATCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCATTTGGCTAC
TTATCACATTTTTGGGACTGCTACCAACCCAAATGATCGGTTCTTTCAAA
GAATTGGGTTTCGTTGGACCATCAGCTGTTTTTTTCAGTGTGACTGCATT
ATTCTTGGTTATTGTATCAGGATACATAGTGCAAGCAAATAATATCTTGC
CGCCAGACCCTTTAACAAAGAGTGTCTTAGAGAAAGCACTACCGTGGATA
GACTACACACCACCATACACATTTTTCTCAGTTTCTGGCACTATATTTTT
CTCACTTGCTGGATATATGTTGGTATTACCGAGCCTGGCAGCTATAGATC
CAGATACTGGATCTCTTAATAGGACAGTCACAACATCAGCTGTATGTGTT
TATATATTGTACTGTGTAGCAGGCTATGTGACCTACTTATTATTCAACGA
TTACGTCATCGAAGTTTCGATTGTTGATACGATACAAAGGATAGCGAAGG
GAGCAGAAAATTCTACTTTGTTGGTATTTGCCAAGATCATTGAAGCTCTT
TTGGTGCTCCACTTTGTTTGTGCTATATGTCTTGCTGGTAATCCGGTTTA
CTTGTACTTGGAATCCGTCTTCACAGTTCCGAATGGTAAGGCTTTATATA
TTTCTCCTTAAAAATCACTTACTCCTTTGGAGTGGGGAGTTGGTAGAAAG
TCGATCATTGATTGATTTTGGGGTCATTTTTACCAAAACACCCTAGGAAA
TATAGACTTTGACTTTTTTTAGGAATATGTAGTATGATACGATAGGAAGG
GGCTAGTTATGAAATGCTACTTGGGTGATTTTTCAGAAAAGTTGAAAGGT
GACCTTCATACAATTGAGTGAGATAGAGTGATTATCTGAAAATCTCTGTT
AAGGGTAAATTTATTGTTCATTCCTCAGCCTCGTTCAACACTTTGTAAAA
TTCTTGACCCTACCATATGACTTCGAATAAACGCCCGGGCGTTAAATAAA
TTTTTAAGATTTTAGGAAGTGCGTTTAATCTAAGGGGCGTTCGAAGTAAT
ACGATATTTGTTAAAATAGACTATTTATTTTCTCATAGAATTTTGTTGGA
AGCGGTTTTTACTACGAACTCTCATTTTTGGTGCTTGCACTTTGATTGTC
ATCATATTTCCAAAACTTTCGCAATTCGTATCTTGGCTTGGTGGAGGATT
TTTGTTCAACCTGGCGACATTCGTTCCAATCATTTTGTATTTGTGTTTAT
GTGAAACTTCAATAACGACCAAAGTGTTCTGTTGGTTTTTATTTACTTTA
TCGCTGGTGATTGCAATTGGAGTGAATTATGTGGGACTGGATGTTCTTTT
ATAAAAGATCAAACATATTGAAGTTATTTCGAAGCTTGCGTGTCTTTTTA
AAGTTTTTAAACTTAGATGTACACTGTATTTACGAAGTTTGGTGTTGTGA
AACCTATCACCAAGTTTCTATATCCAATTTTAAGGGAATCCAAGAATCCA
AAATTGTTGTTCAGAAATGCTGCTCACCTTGGAGACCTGCTGCGGTTATG
AGTACAAACGGATGTGAAAATCAATCTGTCCCCCGAATTTTCAAGGGTCG
ACGCACCGGACTCTGCAAGAATTCCAAGGCTTTACCTATTGTCATGCTTT
TTTGTCGTAGTTAGATGTTTTTCTTTAGATCGAGAAGTTAATTTTACAAT
TGAAATAATTTCTAAGTCTTTTGGGTGCGTCTCTTTGTTGGATTGATCTG
CAAATAGTCGACTTGGAAGACAAAATTTAAGCAAATGCCTTTTTAAATTT
AGCAAAATCTCCTCTCAGTTAATATAATAGCAACGAGGGGTAAATCTCTC
GAAAATTTTGTTCGAGATTTGTGAATTATTTTTGATTTATGATTTATTTT
TGATTTATTTTTTATATTTTTTATTTTAGTGATTTACCTCGAATAGCAAG
ACAATTTTTTGTCAAAAGGCTTGGTTTTATTTTGAGTTTTTGTGGATCGC
ATTCGCATTCTCAAGTCTGCTCCAAAAAAAAAGGACAGTCCGTAATTTTT
GAAAGAAACTTTGAACCCTACAGTATGTGGCCCCCAAAACGTCGATTAAA
TTTGAAATTTCTCTCAAATCTAGTATTTTTCTAATGGCCCCCAAAACGGA
GGTTTGAAATTTTAGCGATTTCTCGAGATATTTTTAAGATATGAATACAA
TTTCATTTTTGTCTTTACTGTCTCAAATGACTTGAAAGAATCAAAGAATT
TTATCTCGGACATGGAATGAAGGGAAAACGATTGATTGCATACGAAATTT
TTTGCCAAACGAGACAAAACTATCCACTTGCAACTAATTGTACACCCCTT
CTCACAGACCCGATAGCATTTTTTTCTATGCCAGTGGGGGTAAAAATAAC
AGCCTAAAACTCGATGGGGATTAATATATTCTCATTTTTTTATAGCTGGG
GATTCAGTGAGGATGGGAGAAATAGTACAATGAGCCCCCCCCCCCCCCAA
AAAAAAAAAAAAAGCCCCCCCCCCCCCAATTTCCAATTTTCAAAAAAAAA
ATTTTTTAATTTTTTTATATGAGGGGAATCTGTGACGGCAGGAGAAAAAT
TACAAATAGCCCCCCCCCCCCCAGTCGACCCTCAATTCACGTATTCACGC
ACAAAATTTTATCAATTCACGTATTCACGCGCGAAAAAAACCATTTTCAC
GTTCACGTGCCAATTTTGCTTTTATATTTTTGGTTAAATCGATTGTGACC
TTTCTATGGTTTCTTTAGACGGTTTGACCTATGCTAATGCCAAACATTTT
CGCCAATATAAAGTTTTTTGCAGTTTTGTGACCTTATTATCGATAGCGTC
GATCATTTAAGGCATCTTTTACAGCTATTTAAGCTTTAATAGAGCAATGT
TTTAGGTCTGCCGCGCAAAAGTTACAAAAAACTACCCCTCTGGCGTAGGG
TGGGCTGTTGTTGTGGGATTTTCTTCCTCGCAGACCCGTAAAAGGTCTTT
TTTGATTTTAAATCGAGGTTGGGCTAATCATGGTTTGAGAAGCCGTAGAC
TTCAACAAAAACTTCAAAGAGGTGGAGCGGTAGTGTACAACAAGAGGACG
CAAATTCCAATGTTTGACACCTGCCTATTTCATGGGAAAAAAATGTATGT
AAAAAAGCAATGCGAGCGCGAAATCTTTCGACAATTTTCGCTCTTTTATG
ACTGAAAAAACGACCTTAATACGCTAGTGTTAGTCAAGTCTGCCTTGTTT
GGTCACACAATTCTTTGATTTTATTCAACACTGACCATTTGTTGGCAAAA
ATCTGAAACAGCAAGCGACGTACCTGCCGTACCCGGTGCGGTATTCCAAG
AGCTTCGCCCAAGAGAAAACTTTTAANAGCGCCGTCCCTGCCGTACCCGG
TGCGGTATTCCAAGAGCTTCGCCCAAGAGAAAACTTTTAAAATTTAGAAT
GCCTAGATTGCTTGAAAAGGCATCATGTGCATCATTATCTATGAGAATTA
TTTTTTACTTCTTCGATGCTGCATGCATACGAGATGTTTTAGAACTACCT
ACTTTTGCAAAGTATTGAAGGAGCAAAAATCTCTCTAAGTTAACGCAGTA
TCATTTTGTGTATTGTATTGTATAGTAACAATATAAGTGACTACGGAGAG
ATGACCATTATTAAACGCTGACAGAGAAAATTTTCTCTAGACTCTTTTGT
TTTGGCTAAAAACGCTCTCGTATTTGCATCACAAAAATTGACATTAAAAA
TGAAAAAATACGCCCTCAGAAAAATAATGAAAATATTTGTTTAAGATATC
TTTGATGATTTTAATGTTATAAAGTTTTGGTTATTTCGAATGACAATAAG
TTAATCCAAGACTATGCAAGCGAGGCGAGCAAGAAATTTTACAGATTTAG
GTTTACAGATTTTTAGAGTTTCCTTGTATTTTAGACAATGATTTGCTTTT
CACGTTCACGCTAAAAATCTCGATTCACGAATTCACGGTGGAAAAATCTT
ATTTTCACGTTCACGCTGATATCTCAATTCACGTATTCACGCGCTAAAAA
AGTCCAATTCACGTACTCACGTCAGAAAAAAGGCTCATTCACGTGTCACG
CCAGCCCCTGGGGGAGCCCCTACAATATTGCTTATCTGATTATTTTCAGA
GGGTAGATTTTGTAAACACACTCTATCAAACTTGTGTTTCTATTTGATAT
CCAATCTCTATTTATTCAGGGTAACGACAGTATTTTTCAAAGCTTGTTGT
TAACATGCTTTTCCAATAGCAACATAGAGAAGAGTCGAGTTATTTTCTTT
TGAAAATAGTTTTGTGCAAGAATTTGATCGTGATAAAGTCTTTGGTTTAA
CTTTCCATCTTTGCTATTTTTCGTGATTTTTGATCGTCTCTAGCCCTACT
TTGAGGGAGGAAAGGTGTACTTAGGTAAAAATGGGTGCTGGGTATGTGCA
GACGATAAGAATCGGTTTTTCATCTTCGTAAGTCTCTGCTAAGGGTTACA
ATCATCAGAAAATTTTAAAGTAGTCCCTCTAAGGCTTAGTCTATCTCTGT
CCCAACATGCGATTTTTTATCACCGGTGTCGATGAATAAAAAGCCATGGT
CATCTAGTACAGGCAACCTAAGGGTCGGAATATTCGTGATTTTTAGGATT
TTTTTTATATATAGAGAAAANGCCATGGTCATCTAGTACAGGCAACCTAA
GGGTCAGAATATTCGTGATTGTTAGGATTTTTTTTTTATATAGAGAGAAA
GAATTTGACATTTTTGAGTCCGTTTGAAAGATTTTTGTCAAAATTTTCGA
TAAAACGTGACCCTTTGAGAGGGAAATTCTCGATTTTAGTGAGTTTGGGA
CTTTTTGAAAGATTGACCTCTCGACTCGTACCCCTTTGAGGGACTTTTGA
CGTATGAAAAAGGGTACCCTTATGGCTTGCACATACCTATTTCGCCTAAG
TTACTCCCCTGGATTTATATGTAGATAATAGGAAAAAGAAATTCCATTTT
ATTCCCATTCCAATTATAATAATCTCCAGTGAATTTTTTTTCTTCTAAAA
CAATTTCACTTGGCCATTTTTTATCAAAAAATTTGAAAAACCCGTAGGAA
AATGAAAGACATGTGCCCAAAATAGGCCAAAACCCCCAAAAATAATTCCA
GTAAAATACGATATAACACGATTTTTTATATTTTTTTCTTTCGACCGTGA
AAATAAGTTCCCGCTAAAATTAGCTTCTTTAAGGTAACAAAAATCCTTCT
TACTATATCAGTCGTTTATCTATCGAAACACTTTACTGATAGATTTAATC
ATGGTGGACTCAAATCTTTTTATTGTGTGCAGAATACATACATTTATACC
TCCATGATAATATCTAGTCGTATGAAACTAACCACAAATTTAATTTCTTT
CTTATCAACAATAAATGCAATAACATTCCTGATTTTACTTTATAAGTAGT
TTGTATTACTGTATGTTGTCTATACTTTAGATAGAATCATTTTGGTCACG
GATGACATTGCGATATGATGTTTGAACGAGAAATGAAAGGCACTAACAAC
AAACACTATGGATCAAAAGTTAACGGTTGCCCAGACAACATGAATCAAAT
TGAATTATGGAATAGCAAAAATTTGTAACTAATTTTAACTCTCTTATGTT
AGGGATCTGTTGACTTGATTTAAAGGAGAATCTTTTTTCATTTCTTTTTT
TTAGAGCAAAAGATGAAAAAGAAAGCGCCGCAAACCGCCAGTTCCGCTGT
AAAAAAAATGAGCCCTGTGGTCAGCGGTATGATGATGACTGGCACCATCT
TCGGGTCTGCTTCAATTTTACTCCCTGGGGTTGTCTCACAAGTCGGGGTA
GGCTCATTCTTTCTGATGCTATTTTTCTATTTGATATTGTCATACGCTTG
TACAATGCTTGCAAATTACGTATTTGGTGATTTGTTAAGCAAAACCCCGG
AAAATGACGAATCGTTGCGGAGACCATTACAATATTGCACTGAACGTGCA
TTTGGTAAGAAATCATGGCTCAATATGCTTTTTACTTGCATTCAAATATC
CAGCAACCTTTCCCTCGTCGTTTCGTGTACCATGTTTGCTGCTACCATTT
TAGAATCTGCATTGCCAATCTTGCCATTGAATTTAAATTCATCAAACTTA
ACTCGCATTTGGCTACTTATAACATTTTNAATCACCAGCAACCTTTCCCT
GGTTGTCTCTGCTACAATGATTGTTGCTACCATTTTAGAATCTGCATTGC
CAATCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCATTTGGCTA
CTTATCACATTTTTGGGACTGCTACCAACCCAAATGATCGGTTCTTTCAA
AGAATTGGGTTTCGTTGGACCATCAGCTGTTTTTTTCAGTGTGACTGCAT
TATTCTTGGTTATTGTATCAGGATACATAGTGCAAGCAAATAATATCTTG
CCGCCAGACCCTTTAACAAAGAGTGTCTTAGAGAAAGCACTACCGTGGAT
AGACTACACACCACCATACACATTTTTCTCAGTTTCTGGCACTATATTTT
TCTCACTTGCTGGATATATGTTGGTATTACCGAGCCTGGCAGCTATAGAT
CCAGATACTGAATCTCTTAATAGGACAGTCACAACATCAGCTATATGTGT
TTATATATTATACTGTGCAGCAGGCTATGTGACCTACTTATTATTCAGTG
ATTACGTCATCGAAGTTTCGATTGTTGATACGATACAAAGGATAGCGAAG
GGAGCAGAAAATTCTACTTTGTTGGTACTTGCCAAGATCATCGAAGCTCT
TTTGGTGCTCCACTTCGTTTGTGCTATATGTCTTGCTGGTAATCCGGTTT
ACTTGTACTTGGAATCCGTCTTCACAGTTCCGAATGGTATGTTTTTCTCA
CGATTTCCTGTATTCGCAATCTTCGTTTATTATTCTTTGTCCTCAAATCT
TTTGAAATTAGTATCTTTGTCCACCCTAAATGGAGTTCAGTGAATTTCTA
TTTAGTAAAGTTATAAATTGTTCAAAGGTTGTATTTCAAAAGCCGAACAT
GGGATAATCACGATACCATCGGATTTTAACTTCTTACTTTTATCCTTACT
GGTTTAGATTAATGTTATTCTACTAAAACATTTGTGATCAAAGGTTTTAA
TATTTTCTCATAGAATTTTGTTGGAAGCGGTTTATACTACGAACTCTCAT
TTTTGGCGCTTGCAATTTGATTGTCATTGTATTTCCAAAACTTTCGCAAT
TCGTATCTTGGCTTGGTGGAGGATTTTTGTTCAATCTGGCGACATTCGTT
CCAATCATTTTGTATTTATGTTTATGTGAAACTTCACTGACGACCAAAGT
GTTCTGTTGGTTTTTATTCACTTTATCGCTGGTGATTGCTATCGGAGTGA
ATTATGTGGGACTGGCTGTTCTTTTATAAAGGAATTATAAAGGAAACTTA
CAACTTATGAAATCTTTAAACTATTAACTTTTCAAAATAAAGAAAATTTA
TTCAATTCTTGATTTAAATTTTTAGCTTATCTTCGCTTTATTTGGTTAAT
TAAAACTGAGTTTTAGTTCTTAGGACTTTAAGTAGCGCTGTACATTCGAT
TTAGCGATCTTGCTGCCCTTTCATCATTTGATAATTTAGATATCAAGCCT
TTTAAAGATTAATATAAATACATTTCTAGATAAAGTCTAATTTTTTCGTG
TGTAAAAGCATACAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056979-exon-scaffold_284-1575043694:1353223..1354307 | TCONS_00056979-exon-scaffold_284-1575043694:1353223..1354307 | Clytia hemisphaerica | exon |
| TCONS_00056979-exon-scaffold_284-1575043694:1346140..1346694 | TCONS_00056979-exon-scaffold_284-1575043694:1346140..1346694 | Clytia hemisphaerica | exon |
| TCONS_00056979-exon-scaffold_284-1510915933:1353223..1354307 | TCONS_00056979-exon-scaffold_284-1510915933:1353223..1354307 | Clytia hemisphaerica | exon |
| TCONS_00056979-exon-scaffold_284-1510915933:1346140..1346694 | TCONS_00056979-exon-scaffold_284-1510915933:1346140..1346694 | Clytia hemisphaerica | exon |
| TCONS_00056979-exon-scaffold_284-1491911889:1353223..1354307 | TCONS_00056979-exon-scaffold_284-1491911889:1353223..1354307 | Clytia hemisphaerica | exon |
| TCONS_00056979-exon-scaffold_284-1491911889:1346140..1346694 | TCONS_00056979-exon-scaffold_284-1491911889:1346140..1346694 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1346140..1354307 - |
Blast
The following BLAST results are available for this feature:
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