TCONS_00056969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056969
Unique NameTCONS_00056969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=transcript|length=1641bp
GCCAAACCTCTAATACATAAATCTCTGTTGTCATCATTATAAGTGTTCTA
CTATAGTtgtcaaatcattaaaaaagaactGTCAACTTAGTTACTCCTGA
CAACGCTAACCGCAATAGAGAACAATAGAGCTCTTTATCATCGATTCTAA
CAATCGTCCGAGAGAGAGTAAGGGATGACTATAAAAGCTTATGTAGATTA
AGTAGCTAGTTCAATTAAGACTTTCGACCAAGAGAAGACGCAAAGACGAT
TGGAAAATACACATAGAGTGAAAGGAAaaccaaatttcaattttttttag
tacGACAAAGTTATTACGCAAATAGGAGaactaaattttttaagaacCGA
CTTaaaggtgaagaaaaaaatagaagGGGAAAAGGATTTTGGAGATATTG
TTTTCGTTATTGAGAAGAAACGAACCGTCTGAAATCGAAGGAAAAACATT
cagatttgaaaaataaaatactcaAGCAGTTTTTAAAAGAACTTTCAACC
AACACACAAttcaacaacaaacaacacCATCACGCAAAATGGAAAAATAC
ATGAACATCAAAGCTCCTTACAAACGTCAATCCAGTGGAGGTAATGGAAA
ATCAGACTCCAAAAGCAGTAAAGGCAAAAGCAAAGCTACCTTAAAGACTG
GCAATGAATACATTCGCGGTATCACTGGTTCGTCAGCTCTGGTCAGCAGT
TACGGAACTATGAACTCTAAAATAAACACCACAAAATCGACTACCGGAAC
ATACGGACGAAGCAATACCCTTGGGAAAAGTCACTCTTTCCTTGGTggta
aaaacaataacaacaacTCATCCACATTGGGAAAAAGTAATTCGATTCTC
GGTGGAAGCAAAAGCAGCAGTTCCTCAACTGGTCGACGATCAATCTTCAG
CTTAAGAAAGAAATAAGTTGATTTCAGTTGAAGAAGCTGCAAGGGGTTTT
ATCACTTGGCAATCAAATTTCGACAGCCCtgataaaaaattagaaacttT
GTCCaaattggaaagataattttgaccGGATGTCGATTATAAATAGCAAG
CGATTGATATTTAATTAAACAAACTGTCGCCAAAATCATCTTGAAAGTGA
TTAAGCTATCAAACGAACGCTGTAGAACCGATTGGCATTGGCCAGCGTTC
TCTAATATGCTTTCATCATTTAATAGGTTAACAATTTAAAATGATTTATT
GTTCCCATTAATGATGGTATCAAAAGATTATTGTGTAGAAAGAACTTTAA
AACACTTGTAAATTTTGttagaaataaatttttgtacATACTGTACAgtg
agaatattttttaaaatttctttttttttgtaatttatggAAAGAATTTG
GTTTtttcaaattcgtcaaaatatgttttatagacttttagaaaaattat
aaaatttgatttctttttttcaaaacatcgtaattaaaaatgaaattttg
aaaaaagaatcttAATCTTTATTGGTTCAGCTTTTCCCCAAATTCTGAGC
TTGTAAACccttcttttttataaatatgtagttaaaatttttgttctttG
TAATATTACTTGCTGACTTATAAAAATTACTATAAAAAGAAAGTGGAATT
TTAAAGTAaaagttgaaattctattgattttttatattttt
Run BLAST on NCBI

protein sequence of TCONS_00056969-protein

>TCONS_00056969-protein ID=TCONS_00056969-protein|Name=TCONS_00056969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MEKYMNIKAPYKRQSSGGNGKSDSKSSKGKSKATLKTGNEYIRGITGSSA
LVSSYGTMNSKINTTKSTTGTYGRSNTLGKSHSFLGGKNNNNNSSTLGKS
NSILGGSKSSSSSTGRRSIFSLRKK
Run BLAST on NCBI

transcript from alignment at scaffold_284:1206178..1208344-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=transcript|length=2167bp|location=Sequence derived from alignment at scaffold_284:1206178..1208344- (Clytia hemisphaerica)
GCCAAACCTCTAATACATAAATCTCTGTTGTCATCATTATAAGTGTTCTA
CTATAGTTGTCAAATCATTAAAAAAGAACTGTCAACTTAGTTACTCCTGA
CAACGCTAACCGCAATAGAGAACAATAGAGCTCTTTATCATCGATTCTAA
CAATCGTCCGAGAGAGAGTAAGGGATGACTATAAAAGCTTATGTAGATTA
AGTAGCTAGTTCAATTAAGACTTTCGACCAAGAGAAGACGCAAAGACGAT
TGGAAAATACACATAGAGTGAAAGGAAAACCAAATTTCAATTTTTTTTAG
TACGACAAAGTTATTACGCAAATAGGAGAACTAAATTTTTTAAGAACCGA
CTTAAAGGTGAAGAAAAAAATAGAAGGGGAAAAGGATTTTGGAGATATTG
TTTTCGTTATTGAGAAGAAACGAACCGTCTGAAATCGAAGGAAAAACATT
CAGATTTGAAAAATAAAATACTCAAGCAGTTTTTAAAAGGTAAGACAAAG
TTATAATATTTTTAGCGTAGCGGCAAACACACTGCGATGCAAAGTTGTAT
AATGTTTTTGCAAGCATCTATTTTTAAAGATAGAGGACGTTGGAGGTGTT
CTATTCCGCATGTAGTGATCATCGTTTTTAAAACAAGCACAGTAGTCCCG
GCTTGCATGAACAACGTCGTTTCAACATCATCGTACGTTCACAGCATCCA
TATAACGTCAGATGAACGTTGAAACAACGAGCCACGTTGTTTGCCGGCTG
AGAATCTCTCCATCATGCTAAAACGTCTTGTTTTTACTACTGAGTGGGAT
TTTAAGTTTATAAACATAACATTTTGATTGTTCAAAACTGAAAAGAAAAA
CCGGTTCGAGCAAGAAGCAAAAATAGTATAAAAGCTTACTTTGGCTCAGT
GGTGTTCACAGTATAAAGCTTCACTAAACAACTGAACATCTTATTGATAG
TATTATTCCTGTGGTACACCACACAACTGATTTTAATCATTGTTTTGATC
ATATTCTATCAACAGAACTTTCAACCAACACACAATTCAACAACAAACAA
CACCATCACGCAAAATGGAAAAATACATGAACATCAAAGCTCCTTACAAA
CGTCAATCCAGTGGAGGTAATGGAAAATCAGACTCCAAAAGCAGTAAAGG
CAAAAGCAAAGCTACCTTAAAGACTGGCAATGAATACATTCGCGGTATCA
CTGGTTCGTCAGCTCTGGTCAGCAGTTACGGAACTATGAACTCTAAAATA
AACACCACAAAATCGACTACCGGAACATACGGACGAAGCAATACCCTTGG
GAAAAGTCACTCTTTCCTTGGTGGTAAAAACAATAACAACAACTCATCCA
CATTGGGAAAAAGTAATTCGATTCTCGGTGGAAGCAAAAGCAGCAGTTCC
TCAACTGGTCGACGATCAATCTTCAGCTTAAGAAAGAAATAAGTTGATTT
CAGTTGAAGAAGCTGCAAGGGGTTTTATCACTTGGCAATCAAATTTCGAC
AGCCCTGATAAAAAATTAGAAACTTTGTCCAAATTGGAAAGATAATTTTG
ACCGGATGTCGATTATAAATAGCAAGCGATTGATATTTAATTAAACAAAC
TGTCGCCAAAATCATCTTGAAAGTGATTAAGCTATCAAACGAACGCTGTA
GAACCGATTGGCATTGGCCAGCGTTCTCTAATATGCTTTCATCATTTAAT
AGGTTAACAATTTAAAATGATTTATTGTTCCCATTAATGATGGTATCAAA
AGATTATTGTGTAGAAAGAACTTTAAAACACTTGTAAATTTTGTTAGAAA
TAAATTTTTGTACATACTGTACAGTGAGAATATTTTTTAAAATTTCTTTT
TTTTTGTAATTTATGGAAAGAATTTGGTTTTTTCAAATTCGTCAAAATAT
GTTTTATAGACTTTTAGAAAAATTATAAAATTTGATTTCTTTTTTTCAAA
ACATCGTAATTAAAAATGAAATTTTGAAAAAAGAATCTTAATCTTTATTG
GTTCAGCTTTTCCCCAAATTCTGAGCTTGTAAACCCTTCTTTTTTATAAA
TATGTAGTTAAAATTTTTGTTCTTTGTAATATTACTTGCTGACTTATAAA
AATTACTATAAAAAGAAAGTGGAATTTTAAAGTAAAAGTTGAAATTCTAT
TGATTTTTTATATTTTT

Coding sequence (CDS) from alignment at scaffold_284:1206178..1208344-

>TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_284:1206178..1208344- (Clytia hemisphaerica)
ATGGAAAAATACATGAACATCAAAGCTCCTTACAAACGTCAATCCAGTGG
AGGTAATGGAAAATCAGACTCCAAAAGCAGTAAAGGCAAAAGCAAAGCTA
CCTTAAAGACTGGCAATGAATACATTCGCGGTATCACTGGTTCGTCAGCT
CTGGTCAGCAGTTACGGAACTATGAACTCTAAAATAAACACCACAAAATC
GACTACCGGAACATACGGACGAAGCAATACCCTTGGGAAAAGTCACTCTT
TCCTTGGTGGTAAAAACAATAACAACAACTCATCCACATTGGGAAAAAGT
AATTCGATTCTCGGTGGAAGCAAAAGCAGCAGTTCCTCAACTGGTCGACG
ATCAATCTTCAGCTTAAGAAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035875XLOC_035875Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056969-proteinTCONS_00056969-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056969-exon-scaffold_284-1575043694:1207856..1208344TCONS_00056969-exon-scaffold_284-1575043694:1207856..1208344Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1575043694:1206178..1207329TCONS_00056969-exon-scaffold_284-1575043694:1206178..1207329Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1510915933:1207856..1208344TCONS_00056969-exon-scaffold_284-1510915933:1207856..1208344Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1510915933:1206178..1207329TCONS_00056969-exon-scaffold_284-1510915933:1206178..1207329Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1491911889:1207856..1208344TCONS_00056969-exon-scaffold_284-1491911889:1207856..1208344Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1491911889:1206178..1207329TCONS_00056969-exon-scaffold_284-1491911889:1206178..1207329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1206178..1208344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0495499	0.048319	0.19636	0.054888	0.0334104	0	10.6705	9.48262	5.24022	1.96536	2.38453	1.617	97.5112	88.2444	75.9252	132.508	35.0209	38.6213	127.995	150.748	76.9876	86.4721	101.78	141.189	133.823	130.711	296.434	156.804	1.6224	1.09264
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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