TCONS_00056925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056925
Unique NameTCONS_00056925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056925 ID=TCONS_00056925|Name=TCONS_00056925|organism=Clytia hemisphaerica|type=transcript|length=385bp
TGATTTGGCAATCACTGCTTCAAACTCCAAAGATTCGAAATCATTAGACG
TGAAAAAAGGTGATTTCAAAACTGGTGTTTCTTCAAACAAGGACAAAGAA
ACAGGTCAAAGAACTACTTCAGCAAGCATCAATAAAGGCGATTTGGCAAT
CACTGCTTCAAACTCCAAAGATTCGAAATCATTAAACGTGGAAAAAGGCG
ATTTTAAAACTGGTGTTTCTTCAAACAAGGACAAAGAAACAGGTCAAAGA
AATACTTCAGCAAACATCAACAAAGGCGATTTGGTAATCACTGCTTCAAA
CTCCAAAGATTCGAAATCATTAAACATGGAAAAAGGCGATTTTAAAACTG
GTGTTTCTTCAAACAAGGACAAAGAAACAGGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00056925-protein

>TCONS_00056925-protein ID=TCONS_00056925-protein|Name=TCONS_00056925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
DLAITASNSKDSKSLDVKKGDFKTGVSSNKDKETGQRTTSASINKGDLAI
TASNSKDSKSLNVEKGDFKTGVSSNKDKETGQRNTSANINKGDLVITASN
SKDSKSLNMEKGDFKTGVSSNKDKETGQ
Run BLAST on NCBI

transcript from alignment at scaffold_284:454205..455183-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056925 ID=TCONS_00056925|Name=TCONS_00056925|organism=Clytia hemisphaerica|type=transcript|length=979bp|location=Sequence derived from alignment at scaffold_284:454205..455183- (Clytia hemisphaerica)
TGATTTGGCAATCACTGCTTCAAACTCCAAAGATTCGAAATCATTAGACG
TGAAAAAAGGTGATTTCAAAACTGGTGTTTCTTCAAACAAGGACAAAGAA
ACAGGTCAAAGAACTACTTCAGCAAGCATCAATAAAGGTGATATGGCAAT
CACTGCTTCAAATTCAAATCCTTAAACGGTGCATCTAGACGATTCACAAC
TGGCTTTGCTTTGATGAATGATACAGAAAGAGATTACAAATTGTTTTTTT
CCATCGTAATTTATACCTTTTCCCCGGGGGCAGTGGGTTTACCAACTGAC
GGTATGTGCGGTGAAAAAATTGGCTTTTAGAATTGCATCCTTACAGTGCA
CAAAGAAATCGGTGAAATTCATACCCTTACAGTGCATTTTTCAAATTTTC
AAACTCTTTTAGAGCAAAAAAATCATCATTTTCGAGCAAAAATTTGCAAT
TTTTCTCCAGATTTGCTGAAATTTTCACCCTTACAGTGCATTTATCAAAA
GTCCACCCTTACAGTGCATTTCTGATATTTTGAAAAACATACCCTTAACC
GCCGCACATACCCGTCNAAAAACAGGTCAAAGAACTACTTCAGCAAACAT
CAACAAAGGCGATTTGGCAATCACAGCTTCAAACTCTAAAGATTCGAAAT
CATTAAACGTGGAAAAAGGCGTTTCTTCAAACAAGGACAAAGAATCAGGT
CAAAGAACTACTTCAGCAAACATCAACAAAGGCGATTTGGCAATCACTGC
TTCAAACTCCAAAGATTCGAAATCATTAAACGTGGAAAAAGGCGATTTTA
AAACTGGTGTTTCTTCAAACAAGGACAAAGAAACAGGTCAAAGAAATACT
TCAGCAAACATCAACAAAGGCGATTTGGTAATCACTGCTTCAAACTCCAA
AGATTCGAAATCATTAAACATGGAAAAAGGCGATTTTAAAACTGGTGTTT
CTTCAAACAAGGACAAAGAAACAGGTCAA

Coding sequence (CDS) from alignment at scaffold_284:454205..455183-

>TCONS_00056925 ID=TCONS_00056925|Name=TCONS_00056925|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_284:454205..455183- (Clytia hemisphaerica)
GCGATTTGGCAATCACTGCTTCAAACTCCAAAGATTCGAAATCATTAAAC
GTGGAAAAAGGCGATTTTAAAACTGGTGTTTCTTCAAACAAGGACAAAGA
AACAGGTCAAAGAAATACTTCAGCAAACATCAACAAAGGCGATTTGGTAA
TCACTGCTTCAAACTCCAAAGATTCGAAATCATTAAACATGGAAAAAGGC
GATTTTAAAACTGGTGTTTCTTCAAACAAGGACAAAGAAACAGGTCAAGA
TTTGGCAATCACTGCTTCAAACTCCAAAGATTCGAAATCATTAGACGTGA
AAAAAGGTGATTTCAAAACTGGTGTTTCTTCAAACAAGGACAAAGAAACA
GGTCAAAGAACTACTTCAGCAAGCATCAATAAAGGCGATTTGGCAATCAC
TGCTTCAAACTCCAAAGATTCGAAATCATTAAACGTGGAAAAAGGCGATT
TTAAAACTGGTGTTTCTTCAAACAAGGACAAAGAAACAGGTCAAAGAAAT
ACTTCAGCAAACATCAACAAAGGCGATTTGGTAATCACTGCTTCAAACTC
CAAAGATTCGAAATCATTAAACATGGAAAAAGGCGATTTTAAAACTGGTG
TTTCTTCAAACAAGGACAAAGAAACAGGTCAAGATTTGGCAATCACTGCT
TCAAACTCCAAAGATTCGAAATCATTAGACGTGAAAAAAGGTGATTTCAA
AACTGGTGTTTCTTCAAACAAGGACAAAGAAACAGGTCAAAGAACTACTT
CAGCAAGCATCAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035861XLOC_035861Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056925-proteinTCONS_00056925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056925-exon-scaffold_284-1575043694:455047..455183TCONS_00056925-exon-scaffold_284-1575043694:455047..455183Clytia hemisphaericaexon
TCONS_00056925-exon-scaffold_284-1575043694:454205..454452TCONS_00056925-exon-scaffold_284-1575043694:454205..454452Clytia hemisphaericaexon
TCONS_00056925-exon-scaffold_284-1510915933:455047..455183TCONS_00056925-exon-scaffold_284-1510915933:455047..455183Clytia hemisphaericaexon
TCONS_00056925-exon-scaffold_284-1510915933:454205..454452TCONS_00056925-exon-scaffold_284-1510915933:454205..454452Clytia hemisphaericaexon
TCONS_00056925-exon-scaffold_284-1491911889:455047..455183TCONS_00056925-exon-scaffold_284-1491911889:455047..455183Clytia hemisphaericaexon
TCONS_00056925-exon-scaffold_284-1491911889:454205..454452TCONS_00056925-exon-scaffold_284-1491911889:454205..454452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:454205..455183 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201578	0	0	0	0.288808	0	0.374207	0.314911	0.873831	2.80091	2.06957	0.114438	4.98766	4.97431	20.4085	15.8083	3.9688	7.22547	21.3304	10.6849	1.32123	1.29687	8.38527	9.08372	3.39917	3.01201	23.3786	27.5424	10.2368	2.07813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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