TCONS_00056918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056918
Unique NameTCONS_00056918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056918 ID=TCONS_00056918|Name=TCONS_00056918|organism=Clytia hemisphaerica|type=transcript|length=3064bp
ttttaagaagAGAAATTAATATTAAAGTTTCAATCATGAGTGGGAGGAAA
GATAATATGAAGTCTGAGGAGCTCAAGaACATATTGATGACCTTTCGTAT
TGCCGATCTTCAGTCACTCCTCACAAATTGTGGAAGATCACGTTCTGGTC
GTAAACATGAATTATTAGGAAGAGCGCTGAGCCTTTTGAAAACAAATGAT
AGTACAAGAGTACAGGTTAAAAAGAAGATATTGGAAATTCACAATCAACG
TTTCCCATCATCACGGCAGATGCCACCAAATGCAACAATGCACCATAACT
CGTATCAGCAGCACCAACCATCCTATGCATCTTATAACTCTGATAAACAT
GAAGACTCTTATAGCATGCATCGGTCGTCATCAAGCTATAAACATAGCTC
ACAAAATGCTCTAAGTTCATCTAGCTCACAAAAAGGAAGTAGTAGCAGTG
GCAACAATTATTCAACATCAACCAGCTCCATGCCCATTCATCTAGATGTC
AAATTCATCGACCTTCCCTTCTACAATGTCATTGATGTATTAGTAAAACC
AACAAGTTTAGTTCAAAAGACAGTTGTTGGGTATCAAgatacagattttc
tatttcatCTAACTCCTTATCAGTGTCAACTAATAAATAGCTCAAGaGCA
TACAATTCAAAACAAGCAATAGAATACACTGTTCAGATTCAACTCAGGTT
TTGTTTAGCTGAAGTGAGCTGTGTACAAGAAGATTTATATCCAAGTCGTT
GTAAGCTTTCAATAAATGGAAAAGGGCTCACATTACCAGGTCAACCACCA
CCAAATGCACAAAACCAAGAACCAAGGAAACCACATCGACCCATCAATAT
TACTCACATATGTCGTTTAACGCCAACTCAAGCGAATCAGATTCATGTAC
AATGGATGCCTTCAGATATGGGACAGAGGTGGACTGCTACAGTTCATCTG
GTCAAAGTTGTACAACCTGAAACTCTAATACAACAACTAAAAGCAAAAAC
TGAAAGGCCTCCAGCACATACTCTAGCATTTAtaaaagaaaaattgaaac
aagatCCTGATAGTGAGATTGCATTAACAAGTCTAAAAGTTTCTTTATGT
TGTCCGATTGGAAGAACGAGGATGACGATGCCATGTCGAGCGACTAATTG
CAAACACTTACAATGTTTTGACGGTAGTCTTTATATACAAATGAACGAAA
GGAAACCATCTTGGGTTTGTCCTGTTTGTGATCAGAAAGCATATTATGAT
CAGTTATTTAAAGATGGAATGTTCATGGATATAATGGAACAATCAGTACA
CTGTGACGAAATCATGTTTTTCGAAGATGGCTCTTGGAGATCTGCATCTG
AAATCGAAGAATCATCAAAACCTTTATCACAAGTTGTTCAAACACCTGCA
CGCCAGACGAACGGTGGTACTGCAAACTCCAGTGCAAACGATGAATCCTC
ACCACCATCTCCGATCAATATTAATACTCCGCCCCTCATAAAGCAAGACG
ACCGCCCCTTTCACAATACGCCGCCACCCAAAATGCCCCAACTTGATCGG
ATACCGACTGAGAATTCGGAAGAGCCAGGTGACAAAGGGGATGATGAAGA
GGTTGAAGTCATTTGTATCGATGATTCTGATGACGATGACGTAGCACCGC
CTCCGTCTCGCTCATCCCACCCTCCGCCCCCATTGACCAGGGCTCCTGCA
GATTCTAACAGACCACCGTTACCCTTTCCCGACCCAGATCTTCAAGGCTT
AGATTTGTACAATATTCTACCATACGAAGATAGAATTGCAGCTGCAATGC
ATTTAGatcaaaacaattattgtgCGAATTTGGGTGGAAGTAACAATTca
aataactcaagaacttcttCGTCAGCAAGTATCATTGATATTAGTGATGA
ATGATTTAGATGAAAAGAAAGTTGGATGGCAGAGTTTTTCGTATCTTGAC
ATTCTTTCAATGAATGTTCTCCTGGTGGCTTTTNAGAGTATCTTGACATT
CTTTCAATGAATGTTCTCCTGGTGGCTTTTCAACTACTGTACTCATCATG
AAAATGTTCTGATTGTATTTCCGGCAACACTGTACACTCTGTTTGGAAAA
GACCTCATAAGGATTTATCTGCAATGATCTAATACCATTAAAAGAAACGA
ATTCCAGAGAATTCAAAAAtgattcaaaagaaaatcaacatcTGTGTTTT
ACCGTAGCCTTGATCTACAACTAAGATCTGGATCGTATCTTTGTACATCG
ATTACAGGGAAATTCATTGTGAACTGATCGGTATAAACTGGACACTTTAG
TACCGtcagttggtctaatgtcgagatccctcatctaattccgacaccct
tttttagagacgGGAATATTAGGAAGGTCTGAATTGCTGATCGAACCTAC
TTCTCAAAGAGGAATAAGTCTTTTAtctatcagtgattccgaccttcctt
tTATTCCAATCTcttaaaaagggtgtcgaaataacatgagggatgtcgac
attagatgAAGGATGTCAACATTACACCAACTGTTGGTATCAAGCATATA
ATGTGTTACAGCGGATAAAGGAGTTATACTGGCAACTTGTAATCATCCAT
GGTTGTTTATCTGTCAGTCAGTGCATCTTACAGATTTTCTGTTTGTCAAC
TGTTTTGTTTCAGTTAGATATGGAATATTTTGATACTGATAATACATGAA
CACTTGGAAGTTATCGCATGGAAGTATAAAATTTTGTTGGTAGAatctta
ctggcttgatgggtTGTTCTGGTCAGTGCAGTATCTTTTTATATTGAGTT
TTTGcttttactttttaaaaaagtgGTTAGATTTTGTTACTAATTACTGG
ATGTACATATCATCTAGGTTCGtaaaaagtattttcttttgtttttattg
atgcTTTTGTCTGGTTTTGTATATATTTCCTATTATAATGGACTGTTCCA
GAAATAAAAACTGCAGATTCATATAATTTATTCTCGTTTAAATCCACTCT
TGGACGTTTTGCAAACATTCGATTCGCGTAAGGGTTTCGAACGTTTTTTT
TTCCATAATGTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_284:130574..143241-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056918 ID=TCONS_00056918|Name=TCONS_00056918|organism=Clytia hemisphaerica|type=transcript|length=12668bp|location=Sequence derived from alignment at scaffold_284:130574..143241- (Clytia hemisphaerica)
TTTTAAGAAGAGAAATTAATATTAAAGTTTCAATCATGAGTGGGAGGAAA
GATAATATGAAGTCTGAGGAGCTCAAGGTATAATGTTATCTTCATAATAT
CATAATATTTTATTATTTAGTGTTCTTTTTTGTACCAAGTTTATCGTACA
GAGCTCAAATTCCAGATGTAGAGCAATTAACTTTATTATTATGATGTATA
CAAGCTCACAGGCCCGAGGTGGACCTCTACGAACCGATTTCTAATTACAA
TATTAATATGTCAAGTATCTTAGTTGATGTTTTTCCCACGCTTTGTTTAG
GCTTTCTTTAAACGATCTGATTGAGGTCGACTCGATGACAAATCGCGGTA
GTGCATTCCATGTTGGGATCGATCTATAGTAGAAAGATTTCGTCTGAGCC
CCACGAAAACCATCATCAGCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGAATCGATCAAGATGCCGAGGTCTTTTTCTTCAAAA
ACATGTTCAAGTTCATTACCCCCAAGCTGGTATCTGTGTGCATGCTTGAT
GTTGGCGAATTTACCGATTGTTAAGACATGACATTTATCAGGATGGAACG
TGAGTAACCAATCCTGAGACCACTTTTCCATTTCATTGATATCTCTTTGT
ACAACGATAGAGTCTTCTACCGAATCTATAGTCTTCACTATTTTCGTGTC
ATCAGCAAAGAGAAATGCATCCGTAACTACTTTGTCTGGCAAATCATTGA
TGTAAATGACAAATAGCAGAGGTCCAAGTACACTTCCTTGAGGAATCCCA
CTTAAGACAGGGTTAGTTGTTGATTTGGCTGAGTTGACTTTGACCAGCTG
CTTGCGATCTGACAAAAACGATGTTATCCAGTTTAGTAGACTTCCACCTA
CCCCGTAACATTCCAGTTTTTTCTTTAACCTCCTGTGAGGGGCGGTGTCA
AACGCTTTTGCAAAATCAAAATAGATGCAATCGACAACTTTGCCTTCTGC
CATCGTTTCACAACATTGGTCAATGTAGTAAAGAAGTTGAGTGACTGTTG
ATCGCTTACCAATAAAACCGTACATGCTTCATGCTTCAATGATTCTTTGT
TGTCCTCCGACTCCAGAAGAGATGCAACTCGGCTTGTTGACTTCAATTGA
CTTCTTACATGCGACCAAAATCGCTTCGGGTTGTTCTTTGCCGATCTGCT
AATTTCTCGTTCATGGTTTCTACGCGTGCGTCTCATTATACTGTTGACTC
GGTTTCNGACCAAAATCGCTTCGGGTTGTTCTTTGCCGATCTGCTAATTT
CTCGTTCATGGTTTCTACGCGTGCGTCTCATTATACTGTTGACTCTGTTT
CGCGCCGAAACATATTTTGCTCTATTGAACTCCTTGTCAGCATCCGAAGA
ATTAATCCACTTCCTATGTAGGTGATCTTTTATCCTGATTTCATTTCGAA
TATCTTCCCCTATCGGTATATTTCCTTTTTTCTTCCAGAAGGAATTTCCA
ACTTCTTTTAGCGGGACGAATCGGCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTCTTGACTCAATGACTTCAACAGGCTGTTCAACA
TAGAATTGTTTTCGTGCGAGTTAGCTTGCTTCGTAGGGCTTCTGTATATA
CACGCAAATACAAGTTTGTCTTTCTTTGCTAGACGAATCTCGATAATACA
GGTTTCTTCGAATTCAACAGGACTTTCTATGTCAGCAACTAGATGGTCTA
TTGATGAGTGTGCCAATATAACGATTCCTCGACCTTTGTTGTTATTGGTA
TTAGTCGAGTTAACAACTTTATAGTCTTTCATTTCGTATTCGTGGAATAG
ATTATACACATTCACTCAGCATCTGGATAGGGCTATCACTGGTTTCAAAG
TTTCAATCACAGATTTGCACTGCAATGAACCAACGATGTAAAAATAATAG
ATAACCAACTTGCCTTGATTCTCAAAAAACATCCGTGTTACGGTTGTAAA
AATATTAATGACATTTTGCATCGTAAGAAGGGCAATTAAATAAAAACTTG
CTTCATTTGCAACCTTCTATTGGACAGAATCGATCACGTGATGTATATTT
TTCAAAAATTTGGGTTAGAAAAAGTGTATTTTCCTATAGGCAGCCTCACA
GAAGGAATTTTTTAATTAGATATTATTGTTCTATAAACATTCATCTGTTT
ATTTTGTATCANNNNNNNNNGAATCGATCACGTGATGTATATTTTTCCAA
AATTTGGGTTAAAAAAAGGGTATTTTCCTATAGGTAGCCTCACAGAAGGA
ATTTTTTAATTAGATATTATTGTTCTAGAAACATTTATCTGTTTATTTTG
TATCAGGCAACCTTCATGCACTTTTCATTCGTGAGATATCGCACTTCAAA
TCACACATATATTTTTCAGATAACAGCATTTTATGAGCGTTTATTTATCC
AGATGAAGATTAAGTGGTATCAGGCCGATCCGTAGTTAATTTGTCTAAAA
ATTAGTACCTTTATCTTTTGAAAAAAATTCCAAAATTTGTAGTAAATAAC
AATTCAAATTTTCTATCAATTCAGTGGATGTCAAAAAGTGTGTCAAAATC
TAACTAAAAGCATAACACGCACTGCACACAGAGCTTTTTAAAGGAGTGCT
CATTTTAATAGGAAAACAATGGTTGCTCTCTTGGGAGAAGTGCCTTCTAG
AGGTAGTTGGTTATCTATTATTTTTACATCGTTGAATGAACTGTGTTTGA
ATCCAAACACTTCCAGGTAGGGTGTTATGGAAGCATGGTAATACTCTCTA
CATTCACTGATATTGTGTCCCTTATAGTTTTTGTTTTCAAAAAGGAATAT
TTTTTTCTACAGAACATATTGATGACCTTTCGTATTGCCGATCTTCAGTC
ACTCCTCACAAATTGTGGAAGATCACGTTCTGGTCGTAAACATGAATTAT
TAGGAAGAGCGCTGAGCCTTTTGAAAACAAATGATAGTACAAGAGTACAG
GTTAAAAAGAAGATATTGGAAATTCACAATCAACGTTTCCCATCATCACG
GCAGATGCCACCAAATGCAACAATGCACCATAACTCGTATCAGCAGCACC
AACCATCCTATGCATCTTATAACTCTGATAAACATGAAGACTCTTATAGC
ATGCATCGGTCGTCATCAAGCTATAAACATAGCTCACAAAATGCTCTAAG
TTCATCTAGCTCACAAAAGTATGTTTCATTTTATGTTATTCAGTCTTCAG
TATTTGCTAAACATGTCTAATATTTAATCAACATGTATTTATATTAGGGT
ATTCTTATGAAACATAAAGGTAGAGAGGGCATAAATTAAATGTCATTGCA
CTTCTTACATTAAAATATGAAAAGCATTTGAACATGGGATTAAGGTACTA
TATATCAATTTCAAACCTAAAAAACTTTGTTTTTTATTCAAGTCATGGAA
GTTATAACTCACATCCATCTTACTCACAAAACAATTCAATTTATGGTAGA
GGAAGTAGTAGCAGTGGCAACAATTATTCAACATCAACCAGCTCCATGCC
CATTCATCTAGATGTCAAATTCATCGACCTTCCCTTCTACAATGTCATTG
ATGTATTAGTAAAACCAACAAGTTTAGGTAACTCAAAACTCATCTTTTTT
TCTTGTCTGTATAATGAATGAAGTAGTGATGTGAAATACACTTTTACTTT
GACTGTCCTGATCCTCCTAAGTGTTCTGTGAAGGCACAGTGATGACTTTG
CCAGAATTTCAAACTTAATGTTTGATTAAACTGAGATGGTTTAAAATTAT
TGCTGTTATAGATGTTTTATGAAATAAATTGATATGTTTTGGTCTTTTTC
GTTTTAGTTCAAAAGACAGTTGTTGGGTATCAAGATACAGATTTTCTATT
TCATCTAACTCCTTATCAGTGTCAACTAATAAATAGCTCAAGGTATAAGT
TTGAAATAACGTGTCTGTCATATTTAAATACGCACAAATCACAGATATCT
TATATGCAATATTAGATGGAGCTTCCCCTTCCCTGGCTGAAGAAAAATAG
ATAGACAAAACTTTTCAAGCATTTGTAGAAAGTAGCTGCATTCGAAAAAA
GCAATAGTTGAGAAAATGCCTTTTATAATATAATAACGTTTTCATGCCTA
TCGTTTTATAATTATAAAATTATTTTGTTTCAAGATCTTTTTTTTCTTCT
CTAGAGCATACAATTCAAAACAAGCAATAGAATACACTGTTCAGATTCAA
CTCAGGTATTTTACTCAGTCCAGCTAATTTTGAAACCTATTGCTTCTATG
TTGCAACATCAGTCTGTGGACAAAATGTAACTTTTAGAATTCCATCAAGA
CTCATATAAATCAGTTTAAAAATTTGATTTAAGTTTTCTGTAATTCTTAT
TAAAAAACCCTTTTCCTTTTAGGTTTTGTTTAGCTGAAGTGAGCTGTGTA
CAAGAAGATTTATATCCAAGTCGTTGTAAGCTTTCAATAAATGGAAAAGG
GCTCACATTACCAGTAAGTTTAAGTGTGGAGTAGCAAAATTTAAAAACTT
TTTTTCATTACTTTATACACATCAAGGATCCAGTGATAAAAGTTCTCCTG
TCTGAGACTGATTTTCATCTCAGCGAAGTATATAAAGAGTCTTCCCTTCT
CAAAATTCTTGATAATTTACAAAAATATTCAAGAATATAACATATTCTGA
GCTAATTTGCAGTCACAGACAAAAATTTATTGCTTTGTATTGACTATTGA
CACTAAGGATCTGATAATGTTTATTTCAGTTAGCATTTGAGTAACAACAA
ATAATTGGCAAACAACTATATAAAGGTTTTTCAGGTTTTTTTTAAGTTAC
ATAACTTCCGCCCTTATGGAAGCAAACTTTTGATTTGCGAAAGGGATCAA
CTCTACAGATTGGAAGGTTTACTTGAGCAAAACATGAAAAGCTTCTATTC
AGAGCTTGCATTGGTGACATTATCATTACAGGGTCAACCACCACCAAATG
CACAAAACCAAGAACCAAGGAAACCACATCGACCCATCAATATTACTCAC
ATATGTCGTTTAACGCCAACTCAAGCGAATCAGATTCATGTACAATGGAT
GCCTTCAGATATGGGACAGGTGAGTCAATCAAGAAAGTCTGATTTTAAAA
ATTTCATGTGGAGTTTCATGTGTCAGCCTCTTTTAATTTTGAGTCCAACC
ACTTGGTACCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCAAGTCAGTGTACTGGACCATAGG
GTACTAACTTGATTTTTAGATTTTTTTTCAAAAATTAGACCACAACCCTT
TTTAGTACATTGTACTCACTTTCCTCCACAGCCAGGGCTTTGACACAACC
CTTTTTTAATACCACCCTTTCAGTACACTGTACTGACTTTTCTCCATGAC
CGGATTTTTGATGCCACCCTTTTAGTACACTGTACTAGCTGTTTTTCGAT
CAGATAAGTTTAGAAACCACCCCTTATTGTGCACTGTTCTAATTTCTTCT
CGGCCATATAAGTTTAATTTCCACCATATACAATGGGTTTGGAAGTATTT
TGATAAGAAAAGCAACAAATCATATAAAAGGAAAGATTTGAATATCAAAA
TATTTGAATCCTTGTAGTACAAACACTAAAACAATGAAACAGACAAAGTC
ATTTGAATACAGTGAAATTAGCTGAACTTAGCACGTCAAAACACTCAAAA
CCAACTTTGAGTTATTTCCCTTCTTATGACTTGATTTCTGGTTGTCTGGC
AAGCTGTAGCATTTTTTCTTTTTTGAAAAAGAAAAAAAAAAGAGACCTAA
TCCTGTATACAAACTGAAATAGACAAATCTTTTATCAAAATGTAATATTA
TACCAAATATATAAAAAGGTGCTTTCACTTATATACAGATTTTTTTCTAA
GTATGTCCAACAAAAAACAGAAAACAATAGAGCGGACATTTGTTTTTATA
AAACTTGTAAGCTTCGATTCGAACGTTTACACATTCAAATTCTTTTGTTG
ACATAATGTAATATAATGGGCCTGATAGAAAATGTGCGCATGCTGCGACT
CTGAAACAGATCCAATCAAGTAAACAGGAAACATTGGGAGAAAATCAGTG
TACCAATTTGTATCGCTTAACCAGCCTTAACTTGAAGGTCTCGGACCAGC
CTCGACAAATAGGACTAGGGCAAATATACATGGGAATTCACTGGGTTCGT
GTGTTTTTACCATGAAATTAGTACAATGTACTAACTTCTCAGTGTGTATC
AATTCAGAACACCAACCTTTTTTAGTACAGTGTACTAACTTTTTCTTTCT
ATTTTTCTACAGAGGTGGACTGCTACAGTTCATCTGGTCAAAGTTGTACA
ACCTGAAACTCTAATACAACAACTAAAAGCAAAAACTGAAAGGCCTCCAG
CACATACTCTAGCATTTAGTAAGTATTGATAAAATTTGGTATGCTTCGGA
TCACTTTTTTTGGATTCTACACCCAAAAAAAACATAAAATATCAAAACTT
GGTGAAAAATTTTGACAGGACCCAATCCGAACTCGTATCCCCAGTGGTAA
GGACCAATGCCCTGCTGGAACTGCCCTCCCCTTGGGTGCTTCTTAGGGCC
TTTTTACTAACATTTTTGACCTTGGGACCACTTATTTTGGATTCTACAGC
CAAAAAAACTTTGTGGAGCCTGACTCTAGGCTCTAACTAGGCCACCAAGC
CGCTAAAGATTTCTGTATATTGAGCAAATTCACTGCTTAGTAAAAAGGGG
CTAAAGATGTGCTCCGTCACCAGAAGTTTCAGTGGTTCCTGACTGGAAGT
CTTATTTATTAGCTCAAACAAAGAGCTCAAAAGAGCGCCAATGACACCTT
TCTATGTGCATATCTTTTATAATTATGTCATCTTTTTAATGTCAATTTAT
AATGGAATGGTTCAATTCAAATAAAATACGTTTATCATAGAAATCCTGGT
TGCTGTGGAATCTGAAATGATGTTTGGTTTTGTCATAAAACTCATTTATC
ATTATTGAAATATCTGCACCTGTAAGGGATACACACTGAATAATTATACA
CACTGATATATACTTTCTCTCTAATCCCTTTTTTGTTAACCTATGAGGAA
ACTTTTACTCTGTTTCATTTCAGTAAAAGAAAAATTGAAACAAGATCCTG
ATAGTGAGATTGCATTAACAAGTCTAAAAGTTTCTTTATGTTGTCCGGTA
AGTACTCGATTTTTTTCGATTTTTATTCCAACCTGCCCCAGAACCTGCCA
GAACTTATAAGGACTCTTGTTTTATTTATTTTATTAAAAATGCAAGTACT
TAACTTTTGCCTCGATCTGAATATTTTAAGATTGGAAGAACGAGGATGAC
GATGCCATGTCGAGCGACTAATTGCAAACACTTACAATGTTTTGACGGTA
GTCTTTATATACAAATGAACGAAAGGTATAATATGCAATCAATTTCCTAC
TTTCATCACTTTTGCACCTGTTTTTAATCAGAAGCAGAAATTGTGTTGAA
ATATTAGTTAGATACGGAAGGTAATCGTTCTTCATGCAACTTCTGTTAAC
CAATGATATTGCATGAGACTTTAACTGAAACAGGGGTACACTCTTTTTTT
TGTAAGCATAACGTTTATAAGCATACTTAGACTCAAACCCGTTAAAAATA
AGCATAATGCTAAGCATACCTCCAAGCTAAAATGCAAAAAAAACTTGAGC
AGCTTTTCTAAAATGCTGACCTTCTATAAGCTGTTTTAGCAAAGATTTTC
GCCTGCAGCGCTAAATTACAAAGCAATTGTAATTCTTTTGAGCCAAATCA
ATGTTTCGACTTAAATATTCGAAATTTCCATGAACCCAGAGAAAGTCAAC
AGAGTGACGTGTAAGCATATAAATAAGCATAAATTAAGGCTGGAAATGAG
ATTTTGCTAAGCATACTGAGCCTTGCCCCAATTTTCCCGCATGCTTGTAG
TAAAAAAAAGAGTTGATGTTTTGACCGTTTTTTGGGATTTCTACTCTCTC
TCCAACTTTAAAGACCAACTTATCAAGAATTATTATTAACTCCTATTTTT
ACTTTCAGGAAACCATCTTGGGTTTGTCCTGTTTGTGATCAGAAAGCATA
TTATGATCAGTTATTTAAAGATGGGTATGGCGTTTTTCTTTCTCAATGTC
TCCTCTATTTGTATGAAATTAGTGCAATCGCAAGATATTTTTTAAGTGTT
CCACCTGCAAACCACAATCAAACAATATCATATCATCAACGAACCCAACT
TTTATTTAATTTTATTTCTCTAATTTTTTTAGAATGTTCATGGATATAAT
GGAACAATCAGTACACTGTGACGAAATCATGTTTTTCGAAGATGGCTCTT
GGAGATCTGCATCTGAAATCGAAGGTTTTATTTTGAGGCATTCTTAAACA
GTCATACAGACTTCATGCTATGTTATGTTTTAAAACCTCTGAACATTTTC
AAACTAGATCAGAGGAGAATGATTTTTCAATTCTTCTTTTTAATATGTGT
TTCCATTTAAAATCTGAACCCGAAAGGGATGATTTAGAAACCTTTTCTGT
ATAAATGTGATTTAATAGTTTTTCTTGTTTCCTTTAGAATCATCAAAACC
TTTATCACAAGTTGTTCAAACACCTGCACGCCAGACGAACGGTGGTACTG
CAAACTCCAGTGCAAACGATGAATCCTCACCACCATCTCCGATCAATATT
AATACTCCGCCCCTCATAAAGCAAGACGACCGCCCCTTTCACAATACGCC
GCCACCCAAAATGCCCCAACTTGATCGGATACCGACTGAGAATTCGGAAG
AGCCAGGTGACAAAGGGGATGATGAAGAGGTTGAAGTCATTTGTATCGAT
GATTCTGATGACGATGACGTAGCACCGCCTCCGTCTCGCTCATCCCACCC
TCCGCCCCCATTGACCAGGGCTCCTGCGTAAGTATATTTATTTACTAGTC
CATGAATAATAAAGAAAAATGGGTTTGAATGTAAAAATATTTTCAGTCGC
CTATCATACCTTAAATGTAAGAATTATATAGCTCCCTGCTGGTTCTTCTG
GTTCAAATTACGGGGACTATTCTACGTTTGTCGTTATTGTATCTTTGATT
TGTTCTTGTATAAAGGACAAGTATTTTCTTGTATCATTCTTTTTCTCTCA
GTGTATGTCCTGTTAATGGTATTTAGTTAGTTTAAAATTTCATTAAAAAC
ACCTTAGAAAAAAAGGTTTCCCCGAATTCCCATTCATCAGTCATAGCAAG
TCCTCCTGATCAAATTACAAACTTTATATAATTCTCAATTTGATATATTT
TATAGAGATTCTAACAGACCACCGTTACCCTTTCCCGACCCAGATCTTCA
AGGTATTCTTCATTAATAAAAAATAATGTTTACAGACACTCCAAAATACT
TCGAAAGGCTTGCAGTAGTTGATTGAAAGCGGTCTGACCATCTGATAAAG
TGATAATTCACCTAAAAAAGAAAATAAGGACGGATGAAACACTTTTTGCC
ATTGAATATAACCCTTTTTTCAAACTTACCACTGTATGTACATAGGTTAT
CTCTGTTTAACATTTAATNTGGATGAAGCACTTTTTGCCATTGAATATAA
CCCTTTTTTCAATCTTACCACTGTATGTACATAGGTTCTGTTTAACATTT
GTTAAAATGTTTTGTTATTTTGTTCTTTTTCGTTTTATAAGTGTTGTTTC
ATTACAATTCGGAACTTTATAATTTACAAACTTATTTCCTTTATTTACTC
GATATTTTCATCTTTCAAAAAATTTCATTCAAATTTCTTACTTTACTACT
CAAATTGTCACTGATTACACGTTCACCTGAGCTCTGTATTAAAAGAAGAT
TTTGATTTCATTTTTATCTCACAGGCTTAGATTTGTACAATATTCTACCA
TACGAAGATAGAGTAAGTTACTCTTTTTATTGTTTTCTTTATTTTCTTTT
TTGTTTTTCTATAAACAAAAAAGGATGTCATTTTTAGTCAATCAGTTTTG
AAAGCAAATTTATCACTTGTTCTACTGGTCCTACCTGAGTCTGATGAAGT
AACTTTTCTTTTTCGTACCGACTAGTATAACACTTTGTGTGTATCTATAT
TCAGACAATAGCAACATATTTTGAAGGCTGTATGGTAACTATGAAAATTA
TCTTGATTCTAATAGATTTAATTTTTTTCTCTTTATAGATTGCAGCTGCA
ATGCATTTAGATCAAAACAATTATTGTGCGAATTTGGGTGGAAGTAACAA
TTCAAATAACTCAAGAACTTCTTCGTCAGCAAGTATCATTGATATTAGTG
ATGAATGATTTAGATGAAAAGAAAGTTGGATGGCAGAGTTTTTCGTATCT
TGACATTCTTTCAATGAATGTTCTCCTGGTGGCTTTTNAGAGTATCTTGA
CATTCTTTCAATGAATGTTCTCCTGGTGGCTTTTCAACTACTGTACTCAT
CATGAAAATGTTCTGATTGTATTTCCGGCAACACTGTACACTCTGTTTGG
AAAAGACCTCATAAGGATTTATCTGCAATGATCTAATACCATTAAAAGAA
ACGAATTCCAGAGAATTCAAAAATGATTCAAAAGAAAATCAACATCTGTG
TTTTACCGTAGCCTTGATCTACAACTAAGATCTGGATCGTATCTTTGTAC
ATCGATTACAGGGAAATTCATTGTGAACTGATCGGTATAAACTGGACACT
TTAGTACCGTCAGTTGGTCTAATGTCGAGATCCCTCATCTAATTCCGACA
CCCTTTTTTAGAGACGGGAATATTAGGAAGGTCTGAATTGCTGATCGAAC
CTACTTCTCAAAGAGGAATAAGTCTTTTATCTATCAGTGATTCCGACCTT
CCTTTTATTCCAATCTCTTAAAAAGGGTGTCGAAATAACATGAGGGATGT
CGACATTAGATGAAGGATGTCAACATTACACCAACTGTTGGTATCAAGCA
TATAATGTGTTACAGCGGATAAAGGAGTTATACTGGCAACTTGTAATCAT
CCATGGTTGTTTATCTGTCAGTCAGTGCATCTTACAGATTTTCTGTTTGT
CAACTGTTTTGTTTCAGTTAGATATGGAATATTTTGATACTGATAATACA
TGAACACTTGGAAGTTATCGCATGGAAGTATAAAATTTTGTTGGTAGAAT
CTTACTGGCTTGATGGGTTGTTCTGGTCAGTGCAGTATCTTTTTATATTG
AGTTTTTGCTTTTACTTTTTAAAAAAGTGGTTAGATTTTGTTACTAATTA
CTGGATGTACATATCATCTAGGTTCGTAAAAAGTATTTTCTTTTGTTTTT
ATTGATGCTTTTGTCTGGTTTTGTATATATTTCCTATTATAATGGACTGT
TCCAGAAATAAAAACTGCAGATTCATATAATTTATTCTCGTTTAAATCCA
CTCTTGGACGTTTTGCAAACATTCGATTCGCGTAAGGGTTTCGAACGTTT
TTTTTTCCATAATGTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035857XLOC_035857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056918-exon-scaffold_284-1575043694:143165..143241TCONS_00056918-exon-scaffold_284-1575043694:143165..143241Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:138924..139279TCONS_00056918-exon-scaffold_284-1575043694:138924..139279Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:138515..138642TCONS_00056918-exon-scaffold_284-1575043694:138515..138642Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:138200..138284TCONS_00056918-exon-scaffold_284-1575043694:138200..138284Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:137887..137937TCONS_00056918-exon-scaffold_284-1575043694:137887..137937Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:137629..137719TCONS_00056918-exon-scaffold_284-1575043694:137629..137719Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:137023..137160TCONS_00056918-exon-scaffold_284-1575043694:137023..137160Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:135624..135729TCONS_00056918-exon-scaffold_284-1575043694:135624..135729Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:134845..134918TCONS_00056918-exon-scaffold_284-1575043694:134845..134918Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:134617..134711TCONS_00056918-exon-scaffold_284-1575043694:134617..134711Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:133918..133983TCONS_00056918-exon-scaffold_284-1575043694:133918..133983Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:133668..133759TCONS_00056918-exon-scaffold_284-1575043694:133668..133759Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:133115..133454TCONS_00056918-exon-scaffold_284-1575043694:133115..133454Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:132690..132736TCONS_00056918-exon-scaffold_284-1575043694:132690..132736Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:132130..132167TCONS_00056918-exon-scaffold_284-1575043694:132130..132167Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1575043694:130574..131853TCONS_00056918-exon-scaffold_284-1575043694:130574..131853Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:143165..143241TCONS_00056918-exon-scaffold_284-1510915933:143165..143241Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:138924..139279TCONS_00056918-exon-scaffold_284-1510915933:138924..139279Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:138515..138642TCONS_00056918-exon-scaffold_284-1510915933:138515..138642Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:138200..138284TCONS_00056918-exon-scaffold_284-1510915933:138200..138284Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:137887..137937TCONS_00056918-exon-scaffold_284-1510915933:137887..137937Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:137629..137719TCONS_00056918-exon-scaffold_284-1510915933:137629..137719Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:137023..137160TCONS_00056918-exon-scaffold_284-1510915933:137023..137160Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:135624..135729TCONS_00056918-exon-scaffold_284-1510915933:135624..135729Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:134845..134918TCONS_00056918-exon-scaffold_284-1510915933:134845..134918Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:134617..134711TCONS_00056918-exon-scaffold_284-1510915933:134617..134711Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:133918..133983TCONS_00056918-exon-scaffold_284-1510915933:133918..133983Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:133668..133759TCONS_00056918-exon-scaffold_284-1510915933:133668..133759Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:133115..133454TCONS_00056918-exon-scaffold_284-1510915933:133115..133454Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:132690..132736TCONS_00056918-exon-scaffold_284-1510915933:132690..132736Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:132130..132167TCONS_00056918-exon-scaffold_284-1510915933:132130..132167Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1510915933:130574..131853TCONS_00056918-exon-scaffold_284-1510915933:130574..131853Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:143165..143241TCONS_00056918-exon-scaffold_284-1491911889:143165..143241Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:138924..139279TCONS_00056918-exon-scaffold_284-1491911889:138924..139279Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:138515..138642TCONS_00056918-exon-scaffold_284-1491911889:138515..138642Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:138200..138284TCONS_00056918-exon-scaffold_284-1491911889:138200..138284Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:137887..137937TCONS_00056918-exon-scaffold_284-1491911889:137887..137937Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:137629..137719TCONS_00056918-exon-scaffold_284-1491911889:137629..137719Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:137023..137160TCONS_00056918-exon-scaffold_284-1491911889:137023..137160Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:135624..135729TCONS_00056918-exon-scaffold_284-1491911889:135624..135729Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:134845..134918TCONS_00056918-exon-scaffold_284-1491911889:134845..134918Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:134617..134711TCONS_00056918-exon-scaffold_284-1491911889:134617..134711Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:133918..133983TCONS_00056918-exon-scaffold_284-1491911889:133918..133983Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:133668..133759TCONS_00056918-exon-scaffold_284-1491911889:133668..133759Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:133115..133454TCONS_00056918-exon-scaffold_284-1491911889:133115..133454Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:132690..132736TCONS_00056918-exon-scaffold_284-1491911889:132690..132736Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:132130..132167TCONS_00056918-exon-scaffold_284-1491911889:132130..132167Clytia hemisphaericaexon
TCONS_00056918-exon-scaffold_284-1491911889:130574..131853TCONS_00056918-exon-scaffold_284-1491911889:130574..131853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:130574..143241 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.14725	3.25839	1.86624	2.15605	10.7855	6.77914	2.11863	4.74731	2.82446	4.94175	3.15213	2.4075	1.79348	3.79173	3.50755	4.5835	4.31451	3.13358	0.57136	1.96421	2.38457	3.35816	6.97	4.46684	0.622479	1.80076	2.02886	2.48661	4.2209	5.50521
Blast
[Close]
BLAST of TCONS_00056918 vs. Swiss-Prot (Human)
Match: PIAS1 (E3 SUMO-protein ligase PIAS1 OS=Homo sapiens GN=PIAS1 PE=1 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 9.013e-105
Identity = 193/457 (42.23%), Postives = 266/457 (58.21%), Query Frame = 3 
Query:   63 SEELKNILMTFRIADLQSLLTNCGRSRSGRKHELLGRALSLLKTNDSTRVQVK----------KKILEIHNQRFPSSRQMPPNATMHHNS-----YQQHQPSY----ASYNSDKHEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPIHLDVKFIDLPFYNVIDVLVKPTSLVQKTVVGYQDTDFLFHLTPYQCQLINSSRAYNSKQAIEYTVQIQLRFCLAEVSCVQEDLYPSRCKLSINGKGLTLPGQPPPNAQNQEPRKPHRPINITHICRLTPTQANQIHVQWMPSDMGQRWTATVHLVKVVQPETLIQQLKAKTERPPAHTLAFIKEKLKQDPDSEIALTSLKVSLCCPIGRTRMTMPCRATNCKHLQCFDGSLYIQMNERKPSWVCPVCDQKAYYDQLFKDGMFMDIMEQSVHCDEIMFFEDGSW---RSASEIEESS 1367
            S ELK ++M+ R+++LQ LL   GR++ GRKHELL +AL LLK   S  VQ+K          +KI+   +   P+    P  AT+  ++     Y  H  S      S    KHE                                      +++  P+H D+K   LPFY+++D L+KPTSL       +++T F F LTP Q Q I+SS   +  +  ++TVQ+QLRFCL+E SC QED +P    + +N K  +LPG  PP     EP++P RPINIT + RL+ T  N I V W  +++G+ ++  V+LVK +    L+Q+L+AK  R P H+ A IKEKL  DPDSEIA TSL+VSL CP+G+ R+T+PCRA  C HLQCFD +LYIQMNE+KP+WVCPVCD+KA Y+ L  DG+FM+I++    CDEI F EDG+W   RS  E++E S
Sbjct:    4 SAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHE--------------------------------LELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISGTKC-DFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWT-AEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNEKKPTWVCPVCDKKAPYEHLIIDGLFMEILKYCTDCDEIQFKEDGTWAPMRSKKEVQEVS 426
The following BLAST results are available for this feature:
BLAST of TCONS_00056918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIAS19.013e-10542.23E3 SUMO-protein ligase PIAS1 OS=Homo sapiens GN=PI... [more]
back to top