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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056917 ID=TCONS_00056917|Name=TCONS_00056917|organism=Clytia hemisphaerica|type=transcript|length=2015bp
tGTAAATACTGATAAATCGTGAAATGATACGATTGATACgaatattttag
ttttttcgtcaAGTATTTACCCTATAGAAATTTGACTTGACGCAAATGAC
CTATCCATACTCGATCAAATGTCCAATGACGTCATTCccttcatcaaaat
catgatGGTTGCCATAATAATGTTCGATGCATCATTAAGCGAAACAAGAA
GAGATAATTGCAAGCTGTAGAAATTAAATGGAGGCGATGATTTGATGAAC
GATTTTTAATTGCGTTATAACTATTTTCTCGAGGggttttggacaaattt
ctctTCCAGCTGACATACAATGCCATAAAAAGCTGACAAGAAACTTGCAC
GTGATTAAGGTTGAAGTGGATTTttatcagAGTCATAAAATATAGATTAA
TAAAATCAATGCAAATATGGAGGACAGCGATGGATTAAATGACCGACAGA
TTCGGAACAGATCGCTGGATCTTTCCTTTGGTTTACTGGTTTTTCTTCtg
aatgtttttgaaatctacCTGCTGTTACGcatcaacaaaagaaaaatctt
cGAGACCATTCTTCTCAGTTTATCAGTAGCGGATTTATTATTTGGTCTAT
CAAACGCTATAGTCTGTATTATATTCTTGTTGGACCAAGCAAACGCTGAG
AGCCTGCAGACCCTGTTTACAACCTACTTTCTGTTCGTCACAACGTCGAT
TTTACATCTAACGTTAATCAATATGGATCGTATTTGGACCGTAGCTGCAC
CTATTCGCcacaaaatttatttcactCAAAAACGTGTCAAACAAGCCATA
ACCTTTGTTTGGATGTTATCCATAGTAATATCTTTGACTATAGTATTAAC
GAATAGGTTTACGCGGACTTTTGTTACGAAAGAGAAAGTTACGAAAACTC
GTAATGTTACGAGATCTCGCAATGTTACGAGATCATTTGCTACGCGTAAC
TTGCAAACAACACGGAGTACGGTAACCGAAATTTACGAGACCGAAGAAGA
CCGAAATAGCTACAACACAATCATGCAATTAGCGctttcaattatcatta
tcatcGCTGATATCGGCTTTATCGCGTGTAATGCAATCGTCATTTACATG
TTATCCCGTAAAAAGAAAGTTAGATCCGTCACGTCGGCGTCACAAAATCT
GGAACGTAAAGTCTCCGTCATCTGCGTGTTAGTTACGTTAGCGTTTATCG
TATTTACGCTACCTTACGCGTTGGATCGATTGATAAACGGGCGTGCGAAT
GTGTCAACTAATATCCTACTAGTCCTGAATAGTGGAATCAACTCGGTTGT
TTATTTCTTCCGTGGAAGGATTGAGACTTTTATCAACAACCGATTTCAAG
ATAAAACCGACTCTAGTGCCAGTAATACAAGCAATGGGTCAGGGATGACG
CCTTTGACCAAAAGACAGAAAGTTAATTCAAACGCAACTGAATGATGATG
AAATAATTGGACAATATATAGTTGAACTTTGAATGTGATCTTGTTAAGAG
GGGGGGGCTaatacagtgtgtcccgaaaaaagaGGATAATCTatgccaaa
ttttatgacttcttgtacacttttgatattttaatcTCTAAAActtattc
aatcatcttgggaattgaGAATCTATTTATTGAACGGGGAATTTTAATCT
TATTCAATTATTCTATGCTCGGTTTGATGAGTTCTGGAGGATTTTACATT
ATatcaaaaaatttgtccgcttttttcgggacacactgTGAAACTATGAA
AATGTTATGGAGAAATTCACAAATATTACAATATTTTCCAAAGGTGAGAT
ATTCGATTTAATAGTTTTTCAAATCTAGTTTGAAAACAATCAATAGAAAT
ACAACCTAGAAGTTTGTTCATTTTGGAGTTTTTTTCTCTGGGGCTATTAA
GATATTACTGGCCAAAAATTAAACGTAATTATACCATTTAGGAGATGATA
TTTTGCTAACAGTTCTGAAGAGCTATTCTTCGAATTTGAGATTTGAgaaa
cctttggaagtagag Run BLAST on NCBI transcript from alignment at scaffold_284:83659..90629- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056917 ID=TCONS_00056917|Name=TCONS_00056917|organism=Clytia hemisphaerica|type=transcript|length=6971bp|location=Sequence derived from alignment at scaffold_284:83659..90629- (Clytia hemisphaerica)
TGTAAATACTGATAAATCGTGAAATGATACGATTGATACGAATATTTTAG
TTTTTTCGTCAAGTATTTACCCTATAGAAATTTGACTTGACGCAAATGAC
CTATCCATACTCGATCAAATGTCCAATGACGTCATTCCCTTCATCAAAAT
CATGATGGTTGCCATAATAATGTTCGATGCATCATTAAGCGAAACAAGAA
GAGATAATTGCAAGCTGTAGAAATTAAATGGAGGCGATGATTTGATGAAC
GATTTTTAATTGCGTTATAACTATTTTCTCGAGGGGTTTTGGACAAATTT
CTCTTCCAGCTGACATACAATGCCATAAAAAGCTGACAAGAAACTTGCAC
GTGATTAAGGTTGAAGTGGATTTTTATCAGGTATGTTTTTATCATTTTCA
ATACTTATTTTTTATATTACACCCCTGTACAGCTGGCTGTTCCGTTCAAT
GTGTATACTAGCATGTAGCCCCAGCAAGTGTTTATATCACACACCTGTGC
TGTTGAGGACGGGGTGGAAACAAAACGTAGGAAATGTCAAATCATGTTGT
TAGCAGATCAAAGCCCAACAGTAAACTGGAGATCAAATTTAAGGGCATAT
CGGGGTTATCGTAGTTTTGCTCACTTTCATTTTCCATTTCTTTTTTCACT
ACCACTGATCTTGTTCACACGCCCTTGTCTCTTTTTCCCCCGTCTTTTTT
TTTTTGGGGGGGGGATTCCACTTCCTGCACTAAGATTCCAATGACTTTTC
CGGAATACTTCCGCTATTTTTCCCGGGATAGTCGGCATAAGATTGGAAAG
GTTTTTTTTTCTAAAGGTTAGGAACATTTTGTGCTGGGTGAGGAAACTGC
CTATCTTTTTTAACTACTGTACCCGTATTCTTATGGTCTTTTTCCGCTAG
AAAAGTGGCAGAGAGTGGATTGGATAATTCTGGCTGAAAAAAAAAATTTT
GCTTAAAGTGCTTTTTTATGAGAGACAAAACTTATAGCTTGAATTTCTTA
ACTACTGCACGCATTTCAAATTGTCTTGATATGAAACCATGAACGCGAAA
TTCTTAACTAAGGACTTAAAAGTCAAAGATTTTTCTAACTTGTAAACATG
AGGACCGTTAGATCACGTCGTGGATGTTAAATGTAGCACGTATTTCTAAA
TTTAATTCACACTCAATCAATTTCGCGCTTAAATTCAAGTTGCATACACA
CGTTACGACAAATCTGCAAAGTTCACCATTTTTTACAAGTTGTTCAACGT
TATAAGTTGTTCTTAAAGTTTGCTCAGGTTTCAAATCTAAACAAATACTT
GTCTAAAAGAAATATAAAGTAGATTTCGAGCGATTTTTTCAATGTTTAGT
TGTAAAACGTAAACAAATTGCTTCAAACATTTCATGATCTGACGTATGCA
TTCATTAAAATGAGGTAAGGCCTACTTTACATAATTTTGTTATTTTCTAT
ATGGTTTGGATTTTAGAAGCTTTTTTGGTAATTGTGGAAGCTACAATCAT
ACATGGTCGAAAGATATTGAGATTTTAGTGTATTTTAACTTTTCAGAATT
TGAATATTTCACTTTTGGAGGGATTTGGTGGCTTCTAGGCTATGTTCCAA
GCCTTATTGGAGCAAATTTCAGCTTTTAAATCCTGAGATCCTAAGTCTTA
AGTCTCATGTTAAAAGTCAGAGTTAAAACTCTCTAATTCCCGACTATAGT
TTAACGCGCTTAAAAAAACCATTTGTGTTTTGTCCATGATTGTAGTTATC
TTTTCGCGGGCTGGTGTACAGCACAGGTAAATATCTTGCAGGCTTTCCTT
TCTGTGGGGATGAAAACTCTAATATTAATTCAAAAGATTGATGAAATTTT
GCGTGTCTAATTATTTGAGTACCCATAAATTAATGTCAAACAGGACAATT
TTCATTGCAAATTACGACAAAGGTAGCTTAACGTATCGAAAAATTTATAT
ATGATAGTTTCGTTTTTTTTTCCTTGTTCTCTTGTTTTGGGCAATACTGC
AACAAAGAGTTATTTATGATATTCATGCCGTAATGTTTCAAACGAAAGCA
CCCAAAATAACCCGGGCGTTTGCCATTAGTTTTATACCGTATACTAAGCA
ATAACAATTCAAAATTTCCTCTAACAATCAAAAGCTTTTTCTGGGCAATG
ATTGGTTCATTTAGGTCAATTACATCATAATTTTAAGTTTCATCCAATCA
AATCGATTTGATTGTTAAGGGAACTTTATGATAATAGGTAAATTCAAAAT
TAGTGGCAAGCAGCCGGTCTTTTCTGGGGTGCTTCCGTATAAAACATTAC
CTCCTGGATGTCGTAAATTCTATAGTTTCATAATAAGTGATTGATTCGTT
TGTTATTCTCAGTTGGTATTTTTCAGGGTAAAATTGAAATGCTTTAAGCT
CAATTCATTTACTCTATGTTCTCGACTACATTTTTTTTTAAGTTGTTCTT
ATTGTTAACACCTTTATGAGCCTTAATGTTCTTATGAAATTGTTCTTTAA
AAAAGAAAACTGTCATCGTCGTCGTTCTGTGGGCAAAATATACCTTGAGT
TTCTCTGTTGTTTCAAATATTCTTCCTTTTTCGTAGTTTCACCACGTGAC
ATGGTTTGAAAATGAAAAATTTTCAAAGTTGGTACAATTGGTACATTTTT
TCTTCATTTCCGTTGTACGTGACGTTGAGATCTTCAAAGGAACTAACTAG
TTAATATAACTTTTGACAAATTTTATCACCAGTGGGACTCTCATATGGAA
GTTTTTTCCCATTCAATTCATTTTAGTTGTTAAAAGACCTTTTAACTTTT
AACACTAGGGGGATGGCTCTAGTAAAATTGTTGAAAAAAAGAAAAGTTTC
AAGAAGATTATTTTTCAAAGGGAAGTTTTTTTATGAATATTCGCTAGAGT
CATAATTTCTAATTATTTGTATTGATATAGTTTGCTGGGTCTATTCTACA
AGTAAAGGTTAGCGCAAATATCAAAGCAAGGACCATGACGTCCTGACATT
CTAGCACAAGGGTGGGGCTCAGTACTTAGGTAAGATGGGTGTCGGGTATG
TGCGAGCCAAAAGGGTCCCTTTTTTACACCACCGATAGTCTCTCCGAGTG
TTACAAATACCATAAAAAATGACTTTTTTACAGGTTTTTAAATTCTCGTA
ATTTGTTTGAAACTTTTAGCTGAAAATTGGGAGAATAGGCTCTCACAGGG
TCGAATTTCGAACTTTGGCTTGGACCTTATACCTATTACCCCCTGGTATT
CGATTTTTGATAAGAGACTTCTCTGTTTGGGCTTTTCTTTCCGTTTTTTA
CTGTTCTTATCTCACTCTTAATTAAAAAATATCAATTCGCATTCATGATC
GAACTAAAGATTACAAAGTTATTTTAATATCCCCGTAACACTTGGTTTTT
CAATTATCCGACTGTTTTAAATAAAATTTTTGTTCAATTTTCAACAAAAT
CTCAATTCTTATTTCTCGCGTTTAATTCAACAAATCAAAACATTAATATT
AGAATATTAAAATATGGAGACTTTGAATCAAAACGGTAAGATTGAAACGC
TATAAAAACAATACAGAAAAAGAATATCATCAGATTTAAAGTTAGACTTA
TATAAGATTATATGGTCATCTAAGTATACACTATAGCGTCATCTACAATT
GTCAAAACATCTCAATAAATACGTCACTATAATCAAATATTTCACAAAAC
ACTTTAGAGAACAGTGATTTCCTTATGCGAGTTATCAACTTTTTCCTGTT
GAGTGGTAGCTACACAGTTAGGAGAAGTCATGTTAGTAATTTTGTGTGTT
ATGACAATTTTATTGATGTTGTTTTGATTATTGTGTTCATTAGGCTTTTT
TCTAGCGGTAACTGATGATACTACACTTTCACGCTGTTTTAGAATACACA
CCTTTCACTCTAGTTTTTTGTCAAACTCATAGGTGTATCGAAATACCCTG
CAAAATTTATGGATGAGAGCCGTTTTTACGACACTGTAATTATTGTCTTT
GTTTTATCAAAAGATAATGAATATGTCATAAACGTCTGCACTCCCTCATA
AATTTTGCAGGGAATCTCGCTACGACTATGCGAAACTTAAAGATTAACCG
AGAAGCACTTTTAAAGGGGTTGTCGTCGCAAAATGGTCAAAATGGGTACA
GTCCAGTTTTTTCTAAGATCTAAAGGTTATTTTTTTAGGGTAAAGGGGTT
TGCATTTCCAATTTTAGTGAGACTCAGCTGTTCTTGATCTTAGTTGGCAC
TTTGAGCCTTAAATTGTTCTTATCCTATTCTTAATTCAATACCTTATTTT
TACTAGTTTTCTTGAAATTCAGTTACTCTAGGCTCAGCATTGTTCTCAAG
TTGTTCTAATTTTGTGGCATTATTCTGATTATTGAGCCTCAATGTTCTTA
TAGAATTGTTCTTCTAAAAAAGAGGTGAATACAAAGTGTTAAAATATCAA
TAATATAGTTTTACATTTTTTTTCTTTATACCCACATGATATCAAAGTGA
TAAACAATTTTAGATAAGGTTTCCTCTACTGGTGTGATTAATGTCCATTA
ATCGGTTTTTGATGTTATCAGTCGAAACTTCTTTCTACATCTAGATGCCA
AATAGATTACTTTTTGATATTGTTCAGTTTTGAGTCATATTCCTTGTGTT
TCAAATCTCTGTGGTTTGTCAGTATCGTGATGTTACAGATACCTGGTTAG
GGAACTTGTATTATGGCCCAGCTAGACAACTAAAATTTATCCTTTAAGAT
CGCTTTGCAAGTTTATAAGATTAGTAAATCAGAATAGGGGCCGTCCACAT
AGTACGTACGCACTAAGGGGGTCTTCTCAAAAGCGTTTGCTTACGTACAG
GGGGAGGGGAGGGGTCAAAGGAAAATGTACGTACGTACGCAGAGAAAAAA
TTTTCATAACGTGTTTTTTCGTCGACTTTTACGCTTCTTATATGCAAGGA
AAAGAAAAAGTTTCTTTTCAAACAGTCAGTTTCATGTATGAAATAAAGGT
CCGAACGAAACGATTTTCTTCAACCGAGGGGAGGGGGGCTGAATGAAAAG
TACGTACTTACCAGGAGGGAGTATAGACATTTGCGTACAGGGGGGGGGTA
TTTGATTTTCGTACGTACTATGTGGACGGCCCCCAAAGCGGCTAAATTTA
AAACAAAAGTTGTTATGAGAAACTAAAGAACATAGCTTAAAACTTCGTGT
ATTGGATTTATATCTTTAAAGAAGGGCGTTTATTCGAGGGAGCGTTTTTT
GTCGTTTATTGAAAATTGTTCCTTTAAATATTTAATTTTTGTTCCTTAAA
TATATTTGTAATATTTTTCTGATCTTTCAATTACAGAGTCATAAAATATA
GATTAATAAAATCAATGCAAATATGGAGGACAGCGATGGATTAAATGACC
GACAGATTCGGAACAGATCGCTGGATCTTTCCTTTGGTTTACTGGTTTTT
CTTCTGAATGTTTTTGAAATCTACCTGCTGTTACGCATCAACAAAAGAAA
AATCTTCGAGACCATTCTTCTCAGTTTATCAGTAGCGGATTTATTATTTG
GTCTATCAAACGCTATAGTCTGTATTATATTCTTGTTGGACCAAGCAAAC
GCTGAGAGCCTGCAGACCCTGTTTACAACCTACTTTCTGTTCGTCACAAC
GTCGATTTTACATCTAACGTTAATCAATATGGATCGTATTTGGACCGTAG
CTGCACCTATTCGCCACAAAATTTATTTCACTCAAAAACGTGTCAAACAA
GCCATAACCTTTGTTTGGATGTTATCCATAGTAATATCTTTGACTATAGT
ATTAACGAATAGGTTTACGCGGACTTTTGTTACGAAAGAGAAAGTTACGA
AAACTCGTAATGTTACGAGATCTCGCAATGTTACGAGATCATTTGCTACG
CGTAACTTGCAAACAACACGGAGTACGGTAACCGAAATTTACGAGACCGA
AGAAGACCGAAATAGCTACAACACAATCATGCAATTAGCGCTTTCAATTA
TCATTATCATCGCTGATATCGGCTTTATCGCGTGTAATGCAATCGTCATT
TACATGTTATCCCGTAAAAAGAAAGTTAGATCCGTCACGTCGGCGTCACA
AAATCTGGAACGTAAAGTCTCCGTCATCTGCGTGTTAGTTACGTTAGCGT
TTATCGTATTTACGCTACCTTACGCGTTGGATCGATTGATAAACGGGCGT
GCGAATGTGTCAACTAATATCCTACTAGTCCTGAATAGTGGAATCAACTC
GGTTGTTTATTTCTTCCGTGGAAGGATTGAGACTTTTATCAACAACCGAT
TTCAAGATAAAACCGACTCTAGTGCCAGTAATACAAGCAATGGGTCAGGG
ATGACGCCTTTGACCAAAAGACAGAAAGTTAATTCAAACGCAACTGAATG
ATGATGAAATAATTGGACAATATATAGTTGAACTTTGAATGTGATCTTGT
TAAGAGGGGGGGGCTAATACAGTGTGTCCCGAAAAAAGAGGATAATCTAT
GCCAAATTTTATGACTTCTTGTACACTTTTGATATTTTAATCTCTAAAAC
TTATTCAATCATCTTGGGAATTGAGAATCTATTTATTGAACGGGGAATTT
TAATCTTATTCAATTATTCTATGCTCGGTTTGATGAGTTCTGGAGGATTT
TACATTATATCAAAAAATTTGTCCGCTTTTTTCGGGACACACTGTGAAAC
TATGAAAATGTTATGGAGAAATTCACAAATATTACAATATTTTCCAAAGG
TGAGATATTCGATTTAATAGTTTTTCAAATCTAGTTTGAAAACAATCAAT
AGAAATACAACCTAGAAGTTTGTTCATTTTGGAGTTTTTTTCTCTGGGGC
TATTAAGATATTACTGGCCAAAAATTAAACGTAATTATACCATTTAGGAG
ATGATATTTTGCTAACAGTTCTGAAGAGCTATTCTTCGAATTTGAGATTT
GAGAAACCTTTGGAAGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056917-exon-scaffold_284-1575043694:90250..90629 | TCONS_00056917-exon-scaffold_284-1575043694:90250..90629 | Clytia hemisphaerica | exon |
| TCONS_00056917-exon-scaffold_284-1575043694:83659..85293 | TCONS_00056917-exon-scaffold_284-1575043694:83659..85293 | Clytia hemisphaerica | exon |
| TCONS_00056917-exon-scaffold_284-1510915933:90250..90629 | TCONS_00056917-exon-scaffold_284-1510915933:90250..90629 | Clytia hemisphaerica | exon |
| TCONS_00056917-exon-scaffold_284-1510915933:83659..85293 | TCONS_00056917-exon-scaffold_284-1510915933:83659..85293 | Clytia hemisphaerica | exon |
| TCONS_00056917-exon-scaffold_284-1491911889:90250..90629 | TCONS_00056917-exon-scaffold_284-1491911889:90250..90629 | Clytia hemisphaerica | exon |
| TCONS_00056917-exon-scaffold_284-1491911889:83659..85293 | TCONS_00056917-exon-scaffold_284-1491911889:83659..85293 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:83659..90629 - |
Blast
The following BLAST results are available for this feature:
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