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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056916 ID=TCONS_00056916|Name=TCONS_00056916|organism=Clytia hemisphaerica|type=transcript|length=3966bpRun BLAST on NCBI protein sequence of TCONS_00056916-protein >TCONS_00056916-protein ID=TCONS_00056916-protein|Name=TCONS_00056916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp MDTTFRPFKGDGHRRLHPTQLLALTNTLLPRDGRRTPPPPRQRMEDQEIKRun BLAST on NCBI transcript from alignment at scaffold_284:76417..129782- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056916 ID=TCONS_00056916|Name=TCONS_00056916|organism=Clytia hemisphaerica|type=transcript|length=53366bp|location=Sequence derived from alignment at scaffold_284:76417..129782- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:76417..129782- >TCONS_00056916 ID=TCONS_00056916|Name=TCONS_00056916|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_284:76417..129782- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056916 vs. Swiss-Prot (Human)
Match: SMN (Survival motor neuron protein OS=Homo sapiens GN=SMN1 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.921e-17 Identity = 63/175 (36.00%), Postives = 83/175 (47.43%), Query Frame = 1
Query: 103 DNGVVWKRTNGQLQDEDVGETHDEIWDDTALIEAYDKAVQKLKEEIATDD---------EKPIGKTEASGKSESKSKRHKIQCFWKIGQKCLALYSEDELWYEAVILGIHMKENVALVEFDWYHNKEEVSLTDLL-PV-EKKEEMEQATQGERGSFEEDADDDASMTSSLPEEKS 594
++ V+++R GQ D D IWDDTALI+AYDKAV K + D P K KS+ K+ +Q WK+G KC A++SED Y A I I K +V + Y N+EE +L+DLL P+ E +EQ Q E D S S P KS
Sbjct: 16 EDSVLFRRGTGQSDDSD-------IWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQ-QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENEN--ESQVSTDESENSRSPGNKS 180 The following BLAST results are available for this feature:
BLAST of TCONS_00056916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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