TCONS_00056913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056913
Unique NameTCONS_00056913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2059

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056913 ID=TCONS_00056913|Name=TCONS_00056913|organism=Clytia hemisphaerica|type=transcript|length=2059bp
atAAAATAGATTGAAATCATTGGCCAAATTATAACAAATCTTCCAGGAAA
AATGAGAGGTAAATTAACATCAACATCAACAAGGCGTCTTGATCAAGAAA
TTGAACGTCACCGTCACATCACACCTACAACCTCATGTTATCCGTCAGAG
CTCAAAGCGCGCTTAAATAACGCCGTACTAGACTTTACTTTGAATAACGA
ACTCAATCAtattaaaaagcaaatgaaaCATTTCGAAGTCGCTTTTGAAC
GACAACAAATTCGTGCGTTCCAACAGCGTCGTTCTTCGTTACCCGCAGCG
TGTTTACCTCAAGGGAAAAGAGCATCGGTTTCAGGACCAGATAGTGTAAA
CAGACCCAGATCTAACTCACGATATACATTACCTGAGTTACAAAGCTCTA
GACGAAGTAGTTCCGTATTATCACAACCAGCAGCCACCATCACACAACAA
CGCAGACGAATTTCTTCAATCACACCCTCAAGACCAAGTGCTGAACCAAC
CCCTAGAGTGAACCGTTCTTTATCGCTAGACGTGACACAAACAATCAGAC
CATCATCAGgagagaaaaatacaaaaatcacaAACGTTATCCCAACTACT
GATAGATtaaattcaaaacattcaaacactAGAATTTCACCTCGACTTGT
CAGTGCTACTATGGATAAAAGAAAATTATCAGTCGATCGACTTACTGCAG
TTGCATAATTGATATTCCTTAACAAATTTTCTTCGGTCAATCtctaaaat
ttagaattttagaAGATGCAGGAACatatgaaaatctaaaatcgcttaaa
acgcTACAGACCTGTTTGTCTGATTGGATCCCCATATTTGATCCTTACAA
AGACATAATGATAATAGTTTTCTCACGTGAGCTGCTAAACAGATGATTTA
TTGATTTACTTTATTCACAATCTTAACTCTACCTTAACCGATGTAGAGAT
GAATTTTAATAGGGAAatgaattgaaaatgaagaacgCGGTATGAGAATT
TTGGAGAAGCAAAAACCATATGAATGGTTGTTGGAAATTTTGCGGAATTT
TGAGGTTACTAAATGAACATACAGCCCTGAAATATTGAATATGCAGGGGT
AAATATTGAATATCTGGGGAAAGAATTTTACATAGAATAACTGAAAACCT
CTTTTCCTGCcgaattttaaagttttcacAGACATTTATCGAATAAATTC
CTAaccttaaaaatcttttgactTTTTGTGCTTTTCGTATAAAGAAGGCC
AAAAAGGGAAAAATCCTGACCCTTAGAAAGACTATTTTGACTTTCGTTAT
TTTTGAACTGGAAAAAGTCGACCCTCATCATTTACACATAACCCTCCCCA
TCCAATTTTGAATGTGAGAGGGTTCGAATTAACGAGAGTCTAATAATGTA
CTTATAGACGATACTATCTTCCCGTTAGAGGGCCAGTAACATGGGAAAAA
ATATGAGCGCAGAGTTTACAGCCGCCAGTGCGGTTAACGATGTAAAGTTT
GGAACACACGTCACTGCTTACTCCGTCCCGGGCTAACCACCGTTTTCAAG
TTTATCCCtcctcctaaactattcccatcttgatcttgtgtagacgataa
gATGGTCTAATGTACGTAATAACTATCCGTCCgtggggtacttaggcaaa
ggGAGGGGTATGGGTATATGCCACctttaagggtaccttttttggacctt
cAAAGTCCctataagggtcgtaaaaatcacaATATCGAATTTCAGTTTCC
CTAaggattacaaaaaaaaaactccaatatTTATCCCTAAAAAGCCTAAG
TTAAAAAGTTCCGGAAAGGGCcccaaaatttacaaaatttcggTTTTTCC
TCGAATTTTAACactaaaatttcagattttccaatATTGGGTGGCACCTC
CCCCCATTATTTCGCAAGTCTAGCACCCCCTATATATCCAAAGTGCCTAT
CAAGCTTTCTCCTTTCCTGATTTATAATTTATTGATTTATCATTATAAGC
ATTTGTTTAATAACATTTGGATAGATAGATAATTAGaatatacatttttt
ataagcaac
Run BLAST on NCBI

protein sequence of TCONS_00056913-protein

>TCONS_00056913-protein ID=TCONS_00056913-protein|Name=TCONS_00056913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MRGKLTSTSTRRLDQEIERHRHITPTTSCYPSELKARLNNAVLDFTLNNE
LNHIKKQMKHFEVAFERQQIRAFQQRRSSLPAACLPQGKRASVSGPDSVN
RPRSNSRYTLPELQSSRRSSSVLSQPAATITQQRRRISSITPSRPSAEPT
PRVNRSLSLDVTQTIRPSSGEKNTKITNVIPTTDRLNSKHSNTRISPRLV
SATMDKRKLSVDRLTAVA
Run BLAST on NCBI

transcript from alignment at scaffold_284:60345..62764-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056913 ID=TCONS_00056913|Name=TCONS_00056913|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at scaffold_284:60345..62764- (Clytia hemisphaerica)
ATAAAATAGATTGAAATCATTGGCCAAATTATAACAAATCTTCCAGGAAA
AATGAGAGGGTAAGAATTTTTATCAAGTCTCCTATTAATTCGTAAGCTTA
GGGAAATTCCCCACTCTTCAAGGTCTTATATAAAATTTTACGTACATGTG
AAAAAAGCTTTGGATGAGCTATGGATTTCGGCAATTTTGAGCAAACTTTC
CTGAATTATTCAAGTTTCCCCAGGCTTTTTCATGTTTGGAAATGTGACTT
TCGAAAAAAATTTGCGTGAATTGGGTCGATTAGGGGTAAAGGCTTTTAAA
TGGAGCACAAACACTTCGTTTTAAAATTCGACGAATTTAGTTTCGAATAT
AGTTTACTCGCAATCGAAAAATTCTTGATATCTTTAAACTTTAAATTTGT
TTTCAATCTTTTCTCTACAGTAAATTAACATCAACATCAACAAGGCGTCT
TGATCAAGAAATTGAACGTCACCGTCACATCACACCTACAACCTCATGTT
ATCCGTCAGAGCTCAAAGCGCGCTTAAATAACGCCGTACTAGACTTTACT
TTGAATAACGAACTCAATCATATTAAAAAGCAAATGAAACATTTCGAAGT
CGCTTTTGAACGACAACAAATTCGTGCGTTCCAACAGCGTCGTTCTTCGT
TACCCGCAGCGTGTTTACCTCAAGGGAAAAGAGCATCGGTTTCAGGACCA
GATAGTGTAAACAGACCCAGATCTAACTCACGATATACATTACCTGAGTT
ACAAAGCTCTAGACGAAGTAGTTCCGTATTATCACAACCAGCAGCCACCA
TCACACAACAACGCAGACGAATTTCTTCAATCACACCCTCAAGACCAAGT
GCTGAACCAACCCCTAGAGTGAACCGTTCTTTATCGCTAGACGTGACACA
AACAATCAGACCATCATCAGGAGAGAAAAATACAAAAATCACAAACGTTA
TCCCAACTACTGATAGATTAAATTCAAAACATTCAAACACTAGAATTTCA
CCTCGACTTGTCAGTGCTACTATGGATAAAAGAAAATTATCAGTCGATCG
ACTTACTGCAGTTGCATAATTGATATTCCTTAACAAATTTTCTTCGGTCA
ATCTCTAAAATTTAGAATTTTAGAAGATGCAGGAACATATGAAAATCTAA
AATCGCTTAAAACGCTACAGACCTGTTTGTCTGATTGGATCCCCATATTT
GATCCTTACAAAGACATAATGATAATAGTTTTCTCACGTGAGCTGCTAAA
CAGATGATTTATTGATTTACTTTATTCACAATCTTAACTCTACCTTAACC
GATGTAGAGATGAATTTTAATAGGGAAATGAATTGAAAATGAAGAACGCG
GTATGAGAATTTTGGAGAAGCAAAAACCATATGAATGGTTGTTGGAAATT
TTGCGGAATTTTGAGGTTACTAAATGAACATACAGCCCTGAAATATTGAA
TATGCAGGGGTAAATATTGAATATCTGGGGAAAGAATTTTACATAGAATA
ACTGAAAACCTCTTTTCCTGCCGAATTTTAAAGTTTTCACAGACATTTAT
CGAATAAATTCCTAACCTTAAAAATCTTTTGACTTTTTGTGCTTTTCGTA
TAAAGAAGGCCAAAAAGGGAAAAATCCTGACCCTTAGAAAGACTATTTTG
ACTTTCGTTATTTTTGAACTGGAAAAAGTCGACCCTCATCATTTACACAT
AACCCTCCCCATCCAATTTTGAATGTGAGAGGGTTCGAATTAACGAGAGT
CTAATAATGTACTTATAGACGATACTATCTTCCCGTTAGAGGGCCAGTAA
CATGGGAAAAAATATGAGCGCAGAGTTTACAGCCGCCAGTGCGGTTAACG
ATGTAAAGTTTGGAACACACGTCACTGCTTACTCCGTCCCGGGCTAACCA
CCGTTTTCAAGTTTATCCCTCCTCCTAAACTATTCCCATCTTGATCTTGT
GTAGACGATAAGATGGTCTAATGTACGTAATAACTATCCGTCCGTGGGGT
ACTTAGGCAAAGGGAGGGGTATGGGTATATGCCACCTTTAAGGGTACCTT
TTTTGGACCTTCAAAGTCCCTATAAGGGTCGTAAAAATCACAATATCGAA
TTTCAGTTTCCCTAAGGATTACAAAAAAAAAACTCCAATATTTATCCCTA
AAAAGCCTAAGTTAAAAAGTTCCGGAAAGGGCCCCAAAATTTACAAAATT
TCGGTTTTTCCTCGAATTTTAACACTAAAATTTCAGATTTTCCAATATTG
GGTGGCACCTCCCCCCATTATTTCGCAAGTCTAGCACCCCCTATATATCC
AAAGTGCCTATCAAGCTTTCTCCTTTCCTGATTTATAATTTATTGATTTA
TCATTATAAGCATTTGTTTAATAACATTTGGATAGATAGATAATTAGAAT
ATACATTTTTTATAAGCAAC

Coding sequence (CDS) from alignment at scaffold_284:60345..62764-

>TCONS_00056913 ID=TCONS_00056913|Name=TCONS_00056913|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_284:60345..62764- (Clytia hemisphaerica)
TAAATTAACATCAACATCAACAAGGCGTCTTGATCAAGAAATTGAACGTC
ACCGTCACATCACACCTACAACCTCATGTTATCCGTCAGAGCTCAAAGCG
CGCTTAAATAACGCCGTACTAGACTTTACTTTGAATAACGAACTCAATCA
TATTAAAAAGCAAATGAAACATTTCGAAGTCGCTTTTGAACGACAACAAA
TTCGTGCGTTCCAACAGCGTCGTTCTTCGTTACCCGCAGCGTGTTTACCT
CAAGGGAAAAGAGCATCGGTTTCAGGACCAGATAGTGTAAACAGACCCAG
ATCTAACTCACGATATACATTACCTGAGTTACAAAGCTCTAGACGAAGTA
GTTCCGTATTATCACAACCAGCAGCCACCATCACACAACAACGCAGACGA
ATTTCTTCAATCACACCCTCAAGACCAAGTGCTGAACCAACCCCTAGAGT
GAACCGTTCTTTATCGCTAGACGTGACACAAACAATCAGACCATCATCAG
GAGAGAAAAATACAAAAATCACAAACGTTATCCCAACTACTGATAGATTA
AATTCAAAACATTCAAACACTAGAATTTCACCTCGACTTGTCAGTGCTAC
TATGGATAAAAGAAAATTATCAGTCGATCGACTTACTGCAGTTGCATAAA
TGAGAGGTAAATTAACATCAACATCAACAAGGCGTCTTGATCAAGAAATT
GAACGTCACCGTCACATCACACCTACAACCTCATGTTATCCGTCAGAGCT
CAAAGCGCGCTTAAATAACGCCGTACTAGACTTTACTTTGAATAACGAAC
TCAATCATATTAAAAAGCAAATGAAACATTTCGAAGTCGCTTTTGAACGA
CAACAAATTCGTGCGTTCCAACAGCGTCGTTCTTCGTTACCCGCAGCGTG
TTTACCTCAAGGGAAAAGAGCATCGGTTTCAGGACCAGATAGTGTAAACA
GACCCAGATCTAACTCACGATATACATTACCTGAGTTACAAAGCTCTAGA
CGAAGTAGTTCCGTATTATCACAACCAGCAGCCACCATCACACAACAACG
CAGACGAATTTCTTCAATCACACCCTCAAGACCAAGTGCTGAACCAACCC
CTAGAGTGAACCGTTCTTTATCGCTAGACGTGACACAAACAATCAGACCA
TCATCAGGAGAGAAAAATACAAAAATCACAAACGTTATCCCAACTACTGA
TAGATTAAATTCAAAACATTCAAACACTAGAATTTCACCTCGACTTGTCA
GTGCTACTATGGATAAAAGAAAATTATCAGTCGATCGACTTACTGCAGTT
GCATAAATGAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035855XLOC_035855Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056913-proteinTCONS_00056913-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056913-exon-scaffold_284-1575043694:62706..62764TCONS_00056913-exon-scaffold_284-1575043694:62706..62764Clytia hemisphaericaexon
TCONS_00056913-exon-scaffold_284-1575043694:60345..62344TCONS_00056913-exon-scaffold_284-1575043694:60345..62344Clytia hemisphaericaexon
TCONS_00056913-exon-scaffold_284-1510915933:62706..62764TCONS_00056913-exon-scaffold_284-1510915933:62706..62764Clytia hemisphaericaexon
TCONS_00056913-exon-scaffold_284-1510915933:60345..62344TCONS_00056913-exon-scaffold_284-1510915933:60345..62344Clytia hemisphaericaexon
TCONS_00056913-exon-scaffold_284-1491911889:62706..62764TCONS_00056913-exon-scaffold_284-1491911889:62706..62764Clytia hemisphaericaexon
TCONS_00056913-exon-scaffold_284-1491911889:60345..62344TCONS_00056913-exon-scaffold_284-1491911889:60345..62344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:60345..62764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326012	0.280511	0.285202	0.318647	0.103446	0.0613082	0.0986211	0.161574	0.0484807	0.0600511	0.019429	0	0.931051	0.662264	0.141563	0.210348	0.244736	0.545959	0.713501	0.469309	1.98395	2.33333	6.59645	9.73534	5.47685	4.13455	0.736279	0.64546	10.6213	5.98539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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