TCONS_00056906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056906
Unique NameTCONS_00056906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056906 ID=TCONS_00056906|Name=TCONS_00056906|organism=Clytia hemisphaerica|type=transcript|length=894bp
AGGGGGACTTTGctgtttgcgaggtgacggaaGCTCAAGTTCGAGAATCG
ACCCTGTATGAGATTGAGTCTATCTAAGGCCGGGGGGGggactgaccttg
acggccgacggagATGTCTTGAATTTAGTATTATttggaacaattttttt
tgaaaaatatttttccaaacaatTTGTTTCTTCGTTTTCATTACATTTTA
ACATGACAACGCTCGGCCACCATATACAGATGGTTATGACATGTCTCCTT
AGCATCCAGCATCCAGCGTGTACAAAATCAACGAAATGAAGTCGTGAATT
CATCTGTTCCACGTGCGAGatcaagaaacaacaaaaataaaacggAAAAG
CATGAAGTCAACAACAATCATCATTTTCGCCGCCATTTTGGCTATGTGTT
TGGTTGCCGAGGGCAACCCAATGGATGAAAGCGAAAGCAGACCGGAAATG
AACTTTGAGGATGAATTTGACGGGGGAATTTACGCGGATCCAATTTACGA
GGATGTTGAAAATGACGAAGATTCGGAcgaaaaaccaaagaaaatttgTG
TCGCTCACTGCAACGGATGGTTCTTCGGATGAATTAACCAATCACATTAG
ACTTTCAAATCATCAAGAACACTTCAGtaatttataatatattttctttt
tgtagaATATATTCGCCATTATGGGAATAAGTTCATGTTATAAATGTTTC
TTCTGTTCCATATAAATGTACAAGTTCCACCCTGGTCTAGATTAAATTGT
CCATAACTCTAATTTCGGTCACCCATAGAGATGCAAAATACGATAAAAAA
GAAACTATTCCAAAATTTTAATCAACACTAAGTGATaattttatggacct
acctggttatcaaaactaatcaatgaatattaaaacaatgaaac
Run BLAST on NCBI

transcript from alignment at scaffold_284:1434851..1436358+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056906 ID=TCONS_00056906|Name=TCONS_00056906|organism=Clytia hemisphaerica|type=transcript|length=1508bp|location=Sequence derived from alignment at scaffold_284:1434851..1436358+ (Clytia hemisphaerica)
AGGGGGACTTTGctgtttgcgaggtgacggaaGCTCAAGTTCGAGAATCG
ACCCTGTATGAGATTGAGTCTATCTAAGGCCGGGGGGGggactgaccttg
acggccgacggagATGTCTTGAATTTAGTATTATttggaacaattttttt
tgaaaaatatttttccaaacaatTTGTTTCTTCGTTTTCATTACATTTTA
ACATGACAACGCTCGGCCACCATATACAGATGGTTATGACATGTCTCCTT
AGCATCCAGCATCCAGCGTGTACAAAATCAACGAAATGAAGTCGTGAATT
CATCTGTTCCACGTGCGAGatcaagaaacaacaaaaataaaacggAAAAG
GTaatgacaaaatttgaaatcgatgattataattcttttttaaattctac
cGACTCGACCGTTTTGTTACGAATAAATAACAATACCCCTTTTGTATTTT
AATATAATATACGCTGTGTTAATACGCTGTGAGGCTGAAAGGATAAATAG
TGTGGGTGTGGAACAGTTTTGATCATTCTGAAATTGTCTTCGAGAAGAAC
AGTTGGATCACGAAACAGCAAGGTCAGTCTATATAACTTCTTTTTTTGTG
AGTTTGAAGTACCAAAAAGGGAGTGGTGATACCTAAGACACACGACCGTG
AAAAATTCGAGACCCCTGGTAAATACATTAATAAGATCCCTTTAAACGAA
TTGGTGCTTTTAGTTAATTCTCATTACCAAATTGATGGGTTGatgaaaat
tttataattataaCGTTTATTGAAGTAAAGGGTTGACAGATATCTCTCAA
ATTTTTAGCATGAAGTCAACAACAATCATCATTTTCGCCGCCATTTTGGC
TATGTGTTTGGTTGCCGAGGGCAACCCAATGGATGAAAGCGAAAGCAGAC
CGGAAATGAACTTTGAGGATGAATTTGACGGGGGAATTTACGCGGATCCA
ATTTACGAGGATGTTGAAAATGACGAAGATTCGGAcgaaaaaccaaagaa
aatttggtgAGTTTTCCATAAAACGTACAACAAAAGCAACCATTTTTGTC
TGTAAAGCAATAGCCTGCCGAGGATGCATGTGCCTAAATTTAACTAGTTC
CTATAAAAAGGGTTCATAATATTCCttgatattcaaaatatttttctcct
ttttgtttTTAGTGTCGCTCACTGCAACGGATGGTTCTTCGGATGAATTA
ACCAATCACATTAGACTTTCAAATCATCAAGAACACTTCAGtaatttata
atatattttctttttgtagaATATATTCGCCATTATGGGAATAAGTTCAT
GTTATAAATGTTTCTTCTGTTCCATATAAATGTACAAGTTCCACCCTGGT
CTAGATTAAATTGTCCATAACTCTAATTTCGGTCACCCATAGAGATGCAA
AATACGATAAAAAAGAAACTATTCCAAAATTTTAATCAACACTAAGTGAT
aattttatggacctacctggttatcaaaactaatcaatgaatattaaaac
aatgaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035848XLOC_035848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056906-exon-scaffold_284-1491911889:1434851..1435200TCONS_00056906-exon-scaffold_284-1491911889:1434851..1435200Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1510915933:1434851..1435200TCONS_00056906-exon-scaffold_284-1510915933:1434851..1435200Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1575043694:1434851..1435200TCONS_00056906-exon-scaffold_284-1575043694:1434851..1435200Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1491911889:1435659..1435856TCONS_00056906-exon-scaffold_284-1491911889:1435659..1435856Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1510915933:1435659..1435856TCONS_00056906-exon-scaffold_284-1510915933:1435659..1435856Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1575043694:1435659..1435856TCONS_00056906-exon-scaffold_284-1575043694:1435659..1435856Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1491911889:1436013..1436358TCONS_00056906-exon-scaffold_284-1491911889:1436013..1436358Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1510915933:1436013..1436358TCONS_00056906-exon-scaffold_284-1510915933:1436013..1436358Clytia hemisphaericaexon
TCONS_00056906-exon-scaffold_284-1575043694:1436013..1436358TCONS_00056906-exon-scaffold_284-1575043694:1436013..1436358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1434851..1436358 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10741	0.870904	1.56379	0.520728	2.21547	1.9308	11.8534	11.5802	26.5783	10.2863	27.1625	43.98	6.96242	7.43944	22.0904	15.3135	6.01664	3.64598	2.43257	2.45002	3.09764	2.28378	1.38699	1.49977	0.119765	0.163424	1.76602	2.26478	1.16007	1.32761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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