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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056898 ID=TCONS_00056898|Name=TCONS_00056898|organism=Clytia hemisphaerica|type=transcript|length=1061bp
TTAAGATTAGAATAAATAGAAAGCACAATGAAAAGAACATTATTCGAGCA
TGGTACTGGCAATGAAAAGAAatctaaaattgaagatgaacaacaagaag
aagaattaattttttcaaaaccttggaaagGTAGTGATGGAGTTGTCATT
GTTGAAGACAAAGAATTGCATGTTCATACTACAGTTTTGTCTTTGGCTTC
TCCTGTATTTGAAAAGATGTTTAATGGAGGTTTCAAGGAAGCTCAAACTC
GACGAGTTACATTGGAGGGGAAGTCATATGATTTAGTTGAACACATGTTA
AAATTGATTTACCCAAATGATTTATCAAGTTTAGATCCAGAACCCATGCT
TTGTCCAAATTGCCTTGTAAAGAAAAAACAGAATCGCAATCTTTGCCGCT
GGAATATTGCTCGAGTGAAAGACACACCTGAGATTAAACcattgatggaa
aattgccgtGTTTGCGGTAAATGGCTTATCAGAGATTTTCTGAACTTTTA
GATTTGAAGAATATAAAGGAAGATTGTTTCAAGTTTATCAGTGAATACAA
ATTTGGTTTTAATCCATATACAGTTCAAATAATCGAAAGTAAGCTTCAAG
AGAGAGAAATATCTTTGGAATCAAATTTAAGAATCAAAGGAATCTTGTTA
CAAAGATTTGTTGAATCCGATTCTCCAGCTTCGAAAGGTGAAATCAAGAA
GATTGCAAAGGGATTGGCTTCTTTTGATATCAATAAATATGGCACGCCgt
cacaaaaataaaatttcatgaGTTATTTGCAGAAATTCGGCGTTGTTTCA
GGGGGATGGggaatttatacttttttggaaatatcGAGTTTTATATATTA
TTTCTAAAATACTTCTATAAATTGAGCAATGTGGGTGGTGATATCGCAGT
TTTTTTgctacgagtgattaatcgttaattgcacgacaaaacatacgatt
ccgaggtaatcatcagtaaacattcgaaaaccttctttttttcttttgtt
taaaaagaaaacattgctgtgtaatttttctttgttttcaattaaaagaa
gctattgtaac Run BLAST on NCBI protein sequence of TCONS_00056898-protein >TCONS_00056898-protein ID=TCONS_00056898-protein|Name=TCONS_00056898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKRTLFEHGTGNEKKSKIEDEQQEEELIFSKPWKGSDGVVIVEDKELHVH
TTVLSLASPVFEKMFNGGFKEAQTRRVTLEGKSYDLVEHMLKLIYPNDLS
SLDPEPMLCPNCLVKKKQNRNLCRWNIARVKDTPEIKPLMENCRVCGKWL
IRDFLNF Run BLAST on NCBI transcript from alignment at scaffold_284:1191608..1195866+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056898 ID=TCONS_00056898|Name=TCONS_00056898|organism=Clytia hemisphaerica|type=transcript|length=4259bp|location=Sequence derived from alignment at scaffold_284:1191608..1195866+ (Clytia hemisphaerica)
TTAAGATTAGAATAAATAGAAAGCACAATGAAAAGAACATTATTCGAGCA
TGGTACTGGCAATGAAAAGAAatctaaaattgaagatgaacaacaagaag
aagaattaattttttcaaaaccttggaaagGTAGTGATGGAGTTGTCATT
GTTGAAGACAAAGAATTGCATGTTCATACTACAGTTTTGTCTTTGGCTTC
TCCTGTATTTGAAAAGATGTTTAATGGAGGTTTCAAGGAAGCTCAAACTC
GACGAGTTACATTGGAGGGGAAGTCATATGATTTAGTTGAACACATGTTA
AAATTGATTTACCCAAATGATTTATCAAGTTTAGGTAACAATTCTATGTT
TTTAAGGAATACAAAATACCATTGCAAAATAATATTGTAAAATGTAAGTA
TTACATTATAATACTTATCGGTGTTATGGAATGtactttatttattttag
atttgcCTGACAATTCTACCGTGATTATAACATCTGAAATTTGTCCTTCT
TTTTTAGCCCTGGCTAATGTTAATTTGATTGTTATCTTTTTTAGATCCAG
AACCCATGCTTTGTCCAAATTGCCTTGTAAAGAAAAAACAGAATCGCAAT
CTTTGCCGCTGGAATATTGCTCGAGTGAAAGACACACCTGAGATTAGTGA
GTTTTTAGATTGTGATTTTCTTGTGATTTGTGGCTTATATGCCAATACGG
TGTTCTTCATGCTTCCTAGTGCGTTATAACCGAGTTTGtgtcatagtgtc
ctccccccccctttataaagggggggaccaattttccaattttgaatggg
tgagggggaaaaataaaaatttgaaaagtaaaggggagaaaaaaaagagg
ggggaaaacatcgaaagttggcaaatttggtggggggaagtgCGAAATCA
CTTCAATTTTATCTGAGCAACAAAGGAcagtccacatgatatcatgtgat
tagatcatgattgaaagATTAACccattttcgttctattttgtctagtat
tccttttgcagctaaattttatgttaatgttaggttgaaatttgagaaat
ttatacgggtatatggggggaactgatattttcagaattttctggggggt
agcaaaaaagaggggggaaactaaaaaaccgaaaagtcataggggggaaa
aaaagagggggggattgtaaaaaatgaagaatttggtgaggggaacaaac
cctggaggacactatttTAAATtgtgtttgtgtttttttagTGACAGAGA
CGTTAGGCTTCTAATTTGTCTATATcatgactgactgaggacggcGGTAA
ATCAGCAGTTTTGCCGTCCTcgagtttttccaaatcgcttcagtcacttt
accgtgctcaaaagtgcaaatacataaactcactacTTTCTTTGAGGGAG
AGGATTATAATCGCCAATAATTCGTGCTATAGGAGCATCATAGCTTTCAT
CGTTTTCATAGTTTTCCAAAGCAAAGAAGCTCTGCTTTCGTAGAAATATA
TGTCATAGGCAAGGGACAGCTTTGAGCTATTGCATACCTAAAGGAAATGG
ACACAGAAAAATAATCTCGTGAAAATTTGTTGTTTCTAGAACcattgatg
gaaaattgccgtGTTTGCGGTAAATGGCTTATCAGAGATTGTAAGTAAtg
aaattattgaaagtttctaTTTTGATGATATTCCGTCACTCCTGTTTGTC
CTTTCAACAAGCTCAAAACCCCTTTCTAATTTGAGTTATATATTCTATAT
ATATTCTTTTTTAACCGTGTCAAAAAGACTGAAGACGAATCATCTCGTTA
TAATCTTGTTAAAGGTTTCGCGACTGAATGACGAAATACATCGTCAGAAA
GTTAATTGGGGTTTCGTTACCATTACTGAAAAATGAAACGGTTTGTGTAC
AAAACTTTATACACATTCAATTTGAGACCAGGGGGGTGGGGCTTGGGCAA
AATTGGATACGGGGACGTGCTGCTGGGGGTCCCTTTTTtcaggctctgaa
gatatctgacagggtcttaaatgtactaattttcaagatatcTCTGGTAG
GGTCGACTCttggtaatttttgacaattttcagggtgcgcagatatgaaa
aattttcaattttgcgttacttttagtcattttggctACTTCAGAgagag
aaaataagaaaatttttcgatttttctttcTGACAGGGCTCCAAATTTAC
CAGATATTcatttctgacagggtccatttttcaaactccagcggcacgtc
cccgtcggccgtcaaggtcaatgccccccccccccccNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGTGAAAGAAGAGTtgcaaccttgaaat
tttgaaatttatcgttgaaacaaaccatttcaggatagaaacaaaaaaat
ccaaaatttgttgagttcccctttaagTAACTGCTCAGGCTCAGAACAAG
AAATCCAGTTCAAAAGAGAAACAGTAAGATAAAAACTTGAATTTGCACAC
ATTTACAATTTAATCTAAACAAAGAGATgataaaatattgttgaaacGAC
ATCCAATATGTCAAAAAGAGAAAATGGAAAATATAGAAGCTATACTTATG
CAGAAgtcagatacacgtttttttataagaacatccaaaaaatttgaata
cttcgaatgttcttaaacatgttcttagtttcaccattttgtgagtattc
cggtccattttcctaagaaattacaTGNTGACCGACAATGTCGATCTCTC
TACGACTTATTCAATGCATTTGACATACTCGAAAGTTCTGAACTTTTAGA
TTTGAAGAATATAAAGGAAGATTGTTTCAAGTTTATCAGTGAATACAAAT
TTGGTTTTAATCCATATACAGTTCAAATAATCGAAAGTAAGCTTCAAGAG
AGAGAAATATCTTTGGAATCAAATTTAAGAATCAAAGGAATCTTGTTACA
AAGATTTGTTGAATCCGATTCTCCAGCTTCGAAAGGTGAAATCAAGAAGA
TTGCAAAGGGATTGGCTTCTTTTGATATCAATAAATATGGCACGCCgtca
caaaaataaaatttcatgaGTTATTTGCAGAAATTCGGCGTTGTTTCAGG
GGGATGGggaatttatacttttttggaaatatcGAGTTTTATATATTATT
TCTAAAATACTTCTATAAATTGAGCAATGTGGGTGGTGATATCGCAGTTT
TTTTgctacgagtgattaatcgttaattgcacgacaaaacatacgattcc
gaggtaatcatcagtaaacattcgaaaaccttctttttttcttttgttta
aaaagaaaacattgctgtgtaatttttctttgttttcaattaaaagaagc
tattgtaac Coding sequence (CDS) from alignment at scaffold_284:1191608..1195866+ >TCONS_00056898 ID=TCONS_00056898|Name=TCONS_00056898|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_284:1191608..1195866+ (Clytia hemisphaerica)
ATGAAAAGAACATTATTCGAGCATGGTACTGGCAATGAAAAGAAatctaa
aattgaagatgaacaacaagaagaagaattaattttttcaaaaccttgga
aagGTAGTGATGGAGTTGTCATTGTTGAAGACAAAGAATTGCATGTTCAT
ACTACAGTTTTGTCTTTGGCTTCTCCTGTATTTGAAAAGATGTTTAATGG
AGGTTTCAAGGAAGCTCAAACTCGACGAGTTACATTGGAGGGGAAGTCAT
ATGATTTAGTTGAACACATGTTAAAATTGATTTACCCAAATGATTTATCA
AGTTTAGATCCAGAACCCATGCTTTGTCCAAATTGCCTTGTAAAGAAAAA
ACAGAATCGCAATCTTTGCCGCTGGAATATTGCTCGAGTGAAAGACACAC
CTGAGATTAAACcattgatggaaaattgccgtGTTTGCGGTAAATGGCTT
ATCAGAGATTTTCTGAACTTTTAGATGAAAAGAACATTATTCGAGCATGG
TACTGGCAATGAAAAGAAatctaaaattgaagatgaacaacaagaagaag
aattaattttttcaaaaccttggaaagGTAGTGATGGAGTTGTCATTGTT
GAAGACAAAGAATTGCATGTTCATACTACAGTTTTGTCTTTGGCTTCTCC
TGTATTTGAAAAGATGTTTAATGGAGGTTTCAAGGAAGCTCAAACTCGAC
GAGTTACATTGGAGGGGAAGTCATATGATTTAGTTGAACACATGTTAAAA
TTGATTTACCCAAATGATTTATCAAGTTTAGATCCAGAACCCATGCTTTG
TCCAAATTGCCTTGTAAAGAAAAAACAGAATCGCAATCTTTGCCGCTGGA
ATATTGCTCGAGTGAAAGACACACCTGAGATTAAACcattgatggaaaat
tgccgtGTTTGCGGTAAATGGCTTATCAGAGATTTTCTGAACTTTTAGAT
GAAAAGAACATTATTCGAGCATGGTACTGGCAATGAAAAGAAatctaaaa
ttgaagatgaacaacaagaagaagaattaattttttcaaaaccttggaaa
gGTAGTGATGGAGTTGTCATTGTTGAAGACAAAGAATTGCATGTTCATAC
TACAGTTTTGTCTTTGGCTTCTCCTGTATTTGAAAAGATGTTTAATGGAG
GTTTCAAGGAAGCTCAAACTCGACGAGTTACATTGGAGGGGAAGTCATAT
GATTTAGTTGAACACATGTTAAAATTGATTTACCCAAATGATTTATCAAG
TTTAGATCCAGAACCCATGCTTTGTCCAAATTGCCTTGTAAAGAAAAAAC
AGAATCGCAATCTTTGCCGCTGGAATATTGCTCGAGTGAAAGACACACCT
GAGATTAAACcattgatggaaaattgccgtGTTTGCGGTAAATGGCTTAT
CAGAGATTTTCTGAACTTTTAGATGAAAAGAACATTATTCGAGCATGGTA
CTGGCAATGAAAAGAAatctaaaattgaagatgaacaacaagaagaagaa
ttaattttttcaaaaccttggaaagGTAGTGATGGAGTTGTCATTGTTGA
AGACAAAGAATTGCATGTTCATACTACAGTTTTGTCTTTGGCTTCTCCTG
TATTTGAAAAGATGTTTAATGGAGGTTTCAAGGAAGCTCAAACTCGACGA
GTTACATTGGAGGGGAAGTCATATGATTTAGTTGAACACATGTTAAAATT
GATTTACCCAAATGATTTATCAAGTTTAGATCCAGAACCCATGCTTTGTC
CAAATTGCCTTGTAAAGAAAAAACAGAATCGCAATCTTTGCCGCTGGAAT
ATTGCTCGAGTGAAAGACACACCTGAGATTAAACcattgatggaaaattg
ccgtGTTTGCGGTAAATGGCTTATCAGAGATTTTCTGAACTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056898-exon-scaffold_284-1491911889:1191608..1191941 | TCONS_00056898-exon-scaffold_284-1491911889:1191608..1191941 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1510915933:1191608..1191941 | TCONS_00056898-exon-scaffold_284-1510915933:1191608..1191941 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1575043694:1191608..1191941 | TCONS_00056898-exon-scaffold_284-1575043694:1191608..1191941 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1491911889:1192152..1192253 | TCONS_00056898-exon-scaffold_284-1491911889:1192152..1192253 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1510915933:1192152..1192253 | TCONS_00056898-exon-scaffold_284-1510915933:1192152..1192253 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1575043694:1192152..1192253 | TCONS_00056898-exon-scaffold_284-1575043694:1192152..1192253 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1491911889:1193197..1193247 | TCONS_00056898-exon-scaffold_284-1491911889:1193197..1193247 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1510915933:1193197..1193247 | TCONS_00056898-exon-scaffold_284-1510915933:1193197..1193247 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1575043694:1193197..1193247 | TCONS_00056898-exon-scaffold_284-1575043694:1193197..1193247 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1491911889:1195293..1195866 | TCONS_00056898-exon-scaffold_284-1491911889:1195293..1195866 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1510915933:1195293..1195866 | TCONS_00056898-exon-scaffold_284-1510915933:1195293..1195866 | Clytia hemisphaerica | exon |
| TCONS_00056898-exon-scaffold_284-1575043694:1195293..1195866 | TCONS_00056898-exon-scaffold_284-1575043694:1195293..1195866 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1191608..1195866 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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