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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056894 ID=TCONS_00056894|Name=TCONS_00056894|organism=Clytia hemisphaerica|type=transcript|length=1791bp
tTTAACAGAGAAGTTGGTAGAAGAATCCCTTGAAACGTAGCCAATgctcc
aagccacgataaacttccaatatggtCACAAGACAAACAGATTGTTCTCA
CTTTAAGAATGAGAAAGAGTAGATCAGATTGGTATGATATAGAATTAAAT
GTTTGGAAGACTCGTTACAGGACAATTGACAGaataaaataaacaaagtt
aAAGTTAAATAACAACATTGTAAGAATGGAAAACACAGGACAAGCATCAA
AGCGAAGAGCACAACCATCAGAATCAGATGTCGAAAATGAACCACAAGCT
AAAATTTCCAACAACTTTGACCCTGATGCACCCTTCTCGAAACCCTGGCA
AAACAGCGACGCGGTTTTAATTGTAGAAGAGAAAGAGCTTCACGTACACA
CCAATATCTTGTCTATGGCTTCAGCTGTCTTTGATAAAATGTTTAATGGA
GACTTTGTTGAATCTCAAACTAAGAGAGTAAATCTTGAGGGAAAATCATA
CGAAGTGATTGAATCACTGTTGAGCTCTATATATCCTATGGAAAATAGTT
TAGAAGCAAAAACTGCTCAAATTTGTTGCGAATGTTCATCGATTGACAGA
TCAGTCACTGCTTTTAAACCATTTCCATCGCGAAGATGTGTGAAATGTAA
CGAGTTCTTCGATCAAGATGATGTACAAAGGCAGCAAAATCTGAAACATT
TACAGAAGATATATCCATTGGCAAAAGAGTACATGATGGATGCcttaaaa
gaaagaattttatcTCAATACTCACAACAATGTTATTTTATCATGAGCGT
TTCCCATGCACTTGACCTGCTTGAAACCTTTGAAGTATTGAACCTGGATG
ATGAAAAACATACCGAAGAAACTGAAGTAAAAGATCGAGTTATAGAATTT
CTTTCAGGTCATTTACCAAACGACCTCAAAGAAATCAAATCATTATTGAA
TGGAAGGAATATCTCTTTAAGATATCAATTGCATTTGAAAGCATTAGCTT
TGGACGAAGCTCTCAGAAATTTGTATGATAAAACAGCTGATCAAAAATAT
AAGACCGAAGCTCAATTATTCGTGCAAGATCTACTGTATATGCACTCATT
TAAGTACTGATGGAAAATTTGTTTCAAGGACACCGAAGAGTTGATAAGTA
ACCATTGGATGCTGAAAGACtgaagctttttaaaaaaagatatagGTCAT
CTTATGTTTCTTTATCCAAAGATTGTcttcatgatttttttgataggctc
tttctagattttttttttaagatataatgtgaagaaataagaatccaact
atattcactcaggaaATATGGGTGGCAGAATATGTGacccccaagcgatt
tggagtacattaaaaatgagaccggtcttggtgcggaCAGATCGATAAAA
TGTGCGGCAAAAAAGCGGCGAAACGATTTACCGTGCGGTAAAATGATACC
TTTGTATCGGCcagaaatcatccaaaaatcttttctaaaaaTCCATTCAA
ACGCACTCTATCGGTCACTAAAGAGCACCATTTGAATAAGTGCGGTCATG
GTGCGGACATTTTGCCGTTCGAAACGTTTGCCGGCAAACGAGAAATCATA
ACAAACAGCATACATTTTACGGAAGGGTTTTTTACATGACTGTTCGCCGA
TTTTATAACGTtcagcaaaataaacaaagttgAACTCAAGAATTCACATG
TGAGCATCGAACATCGAACATCGCAAGTTCTTTTTGTGTGTCTAGAAACA
AGTTGTTGTTTTGCTTGcttgaactcgaggctgaaattctt Run BLAST on NCBI protein sequence of TCONS_00056894-protein >TCONS_00056894-protein ID=TCONS_00056894-protein|Name=TCONS_00056894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MENTGQASKRRAQPSESDVENEPQAKISNNFDPDAPFSKPWQNSDAVLIV
EEKELHVHTNILSMASAVFDKMFNGDFVESQTKRVNLEGKSYEVIESLLS
SIYPMENSLEAKTAQICCECSSIDRSVTAFKPFPSRRCVKCNEFFDQDDV
QRQQNLKHLQKIYPLAKEYMMDALKERILSQYSQQCYFIMSVSHALDLLE
TFEVLNLDDEKHTEETEVKDRVIEFLSGHLPNDLKEIKSLLNGRNISLRY
QLHLKALALDEALRNLYDKTADQKYKTEAQLFVQDLLYMHSFKY Run BLAST on NCBI transcript from alignment at scaffold_284:1158848..1162679+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056894 ID=TCONS_00056894|Name=TCONS_00056894|organism=Clytia hemisphaerica|type=transcript|length=3832bp|location=Sequence derived from alignment at scaffold_284:1158848..1162679+ (Clytia hemisphaerica)
tTTAACAGAGAAGTTGGTAGAAGAATCCCTTGAAACGTAGCCAATgctcc
aagccacgataaacttccaatatggtCACAAGACAAACAGATTGTTCTCA
CTTTAAGAATGAGAAAGAGTAGATCAGATTGGTATGATATAGAATTAAAT
GTTTGGAAGACTCGTTACAGGACAATTGACAGGTAAGCATTTAGTTAATG
CAGTCAAATTGAAAATGTCTGGCTAttgattttcagttttaaggTTACTT
TCCTACTATCAAAACTCTAAGCATTTCGTTGCGAAATTTTTTCGACttca
aaatatagaaaatatcttataatattttcaaattataactgtttcaaatt
tctcagttaGCATGTATAATACACATGATATTCTACCGTTCTTACAAGCC
TTGAAAAATGACTCTGTTACAATCATCTTTACCAGTACTGATATAGCGAG
ATGATTGACACTCCCGACAAGAGACAACACGTCTTTTAAACTCGATCAGA
ATCTGATTACTATTATTCACGACATTGAATTTTCAAACTACGATCCAAAC
ACACAATACACTGGTGATTTCTTAATAGACACAGAATAAGCATTAGACAG
CCTGGtctaaaaagaaatattttctaatGATTTTGTAACTAATAGCGAAG
ACGAACAGTACCTGAAAGAGATGCTATacgtactagtaataacatggttt
gaAGGGTGATTTGGGAGAATAAAGTCCCGTGGTtcattaaaaacatttca
aaatatttggggATATACAGGTGGATGTTTAAACCTTAGAGTTTCCCTTt
gagcatcttcctattttttcaTTGACGTATcttgtagggggggggggggg
ggttatttAACCCACTGATTAGAACCCACTATATTTGCCTCGTTGAGGAC
AATAAAATACAATACcgggtgtgtcaaaaaaaaaacgcgcctatttttcg
atttttgacgtaCACATTTCTATCAAAcaaagacaaatgaaatttttagg
gaagatttgaaatttaattttttacctttgttgaaaattatacatttcta
tgttcatttaaaatgactttaTGATAATTCCGCTGACTTATGTCCCGGTA
CAGTACCCTTATGTCCCGGTACAATACAAAACATACACTTTCTCAAATGG
GAATAGGCTCTAGCTTATCTCAAAGATTACTGCATTCATCTAGAATCATA
TAATTATATTGACATTGtagaataaaataaacaaagttaAAGTTAAATAA
CAACATTGTAAGAATGGAAAACACAGGACAAGCATCAAAGCGAAGAGCAC
AACCATCAGAATCAGATGTCGAAAATGAACCACAAGCTAAAATTTCCAAC
AACTTTGACCCTGATGCACCCTTCTCGAAACCCTGGCAAAACAGCGACGC
GGTTTTAATTGTAGAAGAGAAAGAGCTTCACGTACACACCAATATCTTGT
CTATGGCTTCAGCTGTCTTTGATAAAATGTTTAATGGAGACTTTGTTGAA
TCTCAAACTAAGAGAGTAAATCTTGAGGGAAAATCATACGAAGTGATTGA
ATCACTGTTGAGCTCTATATATCCTATGGAAAATAGTTTAGGTGAGTACC
AATACGAGATATTTCAATGGAAGCAAATTGGGCTACATACAGCTACTCAT
TCAATCTGGGTTTAGGTCTGATGCGGATGTCTCCTTAAATTGAGCAAAAA
CATTAGTATTTTACGGTGGAGATTTTCTGATAAACATGATCATATGATCA
TCCATACAATTCCAACTCCCATAGCCTTTTTTACAAACAAGAGTGTACAT
TGAATGTATCGTTTTTATTTCGCCTTGTCTTAAGGGGTTAAAGGGAAACA
TCTACAACCTCTACAAATGCTTCCCTAACTCAGACGATTTCATTTTCCTT
GCCGTATAAGTTTTAGAGgctaatgttttgatttctttcgaCTTTTAGAA
GCAAAAACTGCTCAAATTTGTTGCGAATGTTCATCGATTGACAGATCAGT
CACTGCTTTTAAACCATTTCCATCGCGAAGATGTGTGAAATGTAACGAGT
TCTTCGATCAAGATGGTAAATACCCACTGACTTTTACAGACCCTGGAGAA
AGTTACATCCGCCATATTTGATCGGAGTTCTTttccgcaaagaagccatt
gcagtgttaaagaTGTAACGTCAAACCCAAACAGTGCTacattttcaaaa
gtatttaaGGCAAAgcagatctagcgctctcgatgcattcaCAACTCTAT
TTAGTAGTGCTACCAttttagggtaccacttttataaaaaaaactctgAA
CAAATATTTCGCTTTGCTGGGATTAACAAACTTCCTCCAGGGCGTCTATA
AAGCTCAGTGTGAATACTTGATTGTACttttattgtgttttttttttgtt
caaagcAAATTTCCCTCGGAAAGATGTTTTTCTTACCCCTCTATATTAGT
AATTTGATTTGTCTTTGACAGAACATAATAGGAAGAAGATGCATTTCACT
CTCTAGTTCAGTCCAGCGGTGAACTTTGAGTTCGTACAGTCGAGCTTTTC
TAATTCTAATCTTTCTCGGAATTCGGACTTAAACGTCGGTCCGTACAGGT
GTTAACTGGTATgaaatactctctgtaattcgaatcgtCATCTAATGCAT
GAAGATTCTGTCCCTTGACAATTGAATTAACGAGAGTAAATCGTACCGTA
CTTTTTTGTAGATGTACAAAGGCAGCAAAATCTGAAACATTTACAGAAGA
TATATCCATTGGCAAAAGAGTACATGATGGATGCcttaaaagaaagaatt
ttatcTCAATACTCACAACAATGTTATTTTATCATGAGCGTTTCCCATGC
ACTTGACCTGCTTGAAACCTTTGAAGTATTGAACCTGGATGATGAAAAAC
ATACCGAAGAAACTGAAGTAAAAGATCGAGTTATAGAATTTCTTTCAGGT
CATTTACCAAACGACCTCAAAGAAATCAAATCATTATTGAATGGAAGGAA
TATCTCTTTAAGATATCAATTGCATTTGAAAGCATTAGCTTTGGACGAAG
CTCTCAGAAATTTGTATGATAAAACAGCTGATCAAAAATATAAGACCGAA
GCTCAATTATTCGTGCAAGATCTACTGTATATGCACTCATTTAAGTACTG
ATGGAAAATTTGTTTCAAGGACACCGAAGAGTTGATAAGTAACCATTGGA
TGCTGAAAGACtgaagctttttaaaaaaagatatagGTCATCTTATGTTT
CTTTATCCAAAGATTGTcttcatgatttttttgataggctctttctagat
tttttttttaagatataatgtgaagaaataagaatccaactatattcact
caggaaATATGGGTGGCAGAATATGTGacccccaagcgatttggagtaca
ttaaaaatgagaccggtcttggtgcggaCAGATCGATAAAATGTGCGGCA
AAAAAGCGGCGAAACGATTTACCGTGCGGTAAAATGATACCTTTGTATCG
GCcagaaatcatccaaaaatcttttctaaaaaTCCATTCAAACGCACTCT
ATCGGTCACTAAAGAGCACCATTTGAATAAGTGCGGTCATGGTGCGGACA
TTTTGCCGTTCGAAACGTTTGCCGGCAAACGAGAAATCATAACAAACAGC
ATACATTTTACGGAAGGGTTTTTTACATGACTGTTCGCCGATTTTATAAC
GTtcagcaaaataaacaaagttgAACTCAAGAATTCACATGTGAGCATCG
AACATCGAACATCGCAAGTTCTTTTTGTGTGTCTAGAAACAAGTTGTTGT
TTTGCTTGcttgaactcgaggctgaaattctt Coding sequence (CDS) from alignment at scaffold_284:1158848..1162679+ >TCONS_00056894 ID=TCONS_00056894|Name=TCONS_00056894|organism=Clytia hemisphaerica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_284:1158848..1162679+ (Clytia hemisphaerica)
ATGGAAAACACAGGACAAGCATCAAAGCGAAGAGCACAACCATCAGAATC
AGATGTCGAAAATGAACCACAAGCTAAAATTTCCAACAACTTTGACCCTG
ATGCACCCTTCTCGAAACCCTGGCAAAACAGCGACGCGGTTTTAATTGTA
GAAGAGAAAGAGCTTCACGTACACACCAATATCTTGTCTATGGCTTCAGC
TGTCTTTGATAAAATGTTTAATGGAGACTTTGTTGAATCTCAAACTAAGA
GAGTAAATCTTGAGGGAAAATCATACGAAGTGATTGAATCACTGTTGAGC
TCTATATATCCTATGGAAAATAGTTTAGAAGCAAAAACTGCTCAAATTTG
TTGCGAATGTTCATCGATTGACAGATCAGTCACTGCTTTTAAACCATTTC
CATCGCGAAGATGTGTGAAATGTAACGAGTTCTTCGATCAAGATGATGTA
CAAAGGCAGCAAAATCTGAAACATTTACAGAAGATATATCCATTGGCAAA
AGAGTACATGATGGATGCcttaaaagaaagaattttatcTCAATACTCAC
AACAATGTTATTTTATCATGAGCGTTTCCCATGCACTTGACCTGCTTGAA
ACCTTTGAAGTATTGAACCTGGATGATGAAAAACATACCGAAGAAACTGA
AGTAAAAGATCGAGTTATAGAATTTCTTTCAGGTCATTTACCAAACGACC
TCAAAGAAATCAAATCATTATTGAATGGAAGGAATATCTCTTTAAGATAT
CAATTGCATTTGAAAGCATTAGCTTTGGACGAAGCTCTCAGAAATTTGTA
TGATAAAACAGCTGATCAAAAATATAAGACCGAAGCTCAATTATTCGTGC
AAGATCTACTGTATATGCACTCATTTAAGTACTGAATGGAAAACACAGGA
CAAGCATCAAAGCGAAGAGCACAACCATCAGAATCAGATGTCGAAAATGA
ACCACAAGCTAAAATTTCCAACAACTTTGACCCTGATGCACCCTTCTCGA
AACCCTGGCAAAACAGCGACGCGGTTTTAATTGTAGAAGAGAAAGAGCTT
CACGTACACACCAATATCTTGTCTATGGCTTCAGCTGTCTTTGATAAAAT
GTTTAATGGAGACTTTGTTGAATCTCAAACTAAGAGAGTAAATCTTGAGG
GAAAATCATACGAAGTGATTGAATCACTGTTGAGCTCTATATATCCTATG
GAAAATAGTTTAGAAGCAAAAACTGCTCAAATTTGTTGCGAATGTTCATC
GATTGACAGATCAGTCACTGCTTTTAAACCATTTCCATCGCGAAGATGTG
TGAAATGTAACGAGTTCTTCGATCAAGATGATGTACAAAGGCAGCAAAAT
CTGAAACATTTACAGAAGATATATCCATTGGCAAAAGAGTACATGATGGA
TGCcttaaaagaaagaattttatcTCAATACTCACAACAATGTTATTTTA
TCATGAGCGTTTCCCATGCACTTGACCTGCTTGAAACCTTTGAAGTATTG
AACCTGGATGATGAAAAACATACCGAAGAAACTGAAGTAAAAGATCGAGT
TATAGAATTTCTTTCAGGTCATTTACCAAACGACCTCAAAGAAATCAAAT
CATTATTGAATGGAAGGAATATCTCTTTAAGATATCAATTGCATTTGAAA
GCATTAGCTTTGGACGAAGCTCTCAGAAATTTGTATGATAAAACAGCTGA
TCAAAAATATAAGACCGAAGCTCAATTATTCGTGCAAGATCTACTGTATA
TGCACTCATTTAAGTACTGAATGGAAAACACAGGACAAGCATCAAAGCGA
AGAGCACAACCATCAGAATCAGATGTCGAAAATGAACCACAAGCTAAAAT
TTCCAACAACTTTGACCCTGATGCACCCTTCTCGAAACCCTGGCAAAACA
GCGACGCGGTTTTAATTGTAGAAGAGAAAGAGCTTCACGTACACACCAAT
ATCTTGTCTATGGCTTCAGCTGTCTTTGATAAAATGTTTAATGGAGACTT
TGTTGAATCTCAAACTAAGAGAGTAAATCTTGAGGGAAAATCATACGAAG
TGATTGAATCACTGTTGAGCTCTATATATCCTATGGAAAATAGTTTAGAA
GCAAAAACTGCTCAAATTTGTTGCGAATGTTCATCGATTGACAGATCAGT
CACTGCTTTTAAACCATTTCCATCGCGAAGATGTGTGAAATGTAACGAGT
TCTTCGATCAAGATGATGTACAAAGGCAGCAAAATCTGAAACATTTACAG
AAGATATATCCATTGGCAAAAGAGTACATGATGGATGCcttaaaagaaag
aattttatcTCAATACTCACAACAATGTTATTTTATCATGAGCGTTTCCC
ATGCACTTGACCTGCTTGAAACCTTTGAAGTATTGAACCTGGATGATGAA
AAACATACCGAAGAAACTGAAGTAAAAGATCGAGTTATAGAATTTCTTTC
AGGTCATTTACCAAACGACCTCAAAGAAATCAAATCATTATTGAATGGAA
GGAATATCTCTTTAAGATATCAATTGCATTTGAAAGCATTAGCTTTGGAC
GAAGCTCTCAGAAATTTGTATGATAAAACAGCTGATCAAAAATATAAGAC
CGAAGCTCAATTATTCGTGCAAGATCTACTGTATATGCACTCATTTAAGT
ACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056894-exon-scaffold_284-1491911889:1158848..1159029 | TCONS_00056894-exon-scaffold_284-1491911889:1158848..1159029 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1510915933:1158848..1159029 | TCONS_00056894-exon-scaffold_284-1510915933:1158848..1159029 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1575043694:1158848..1159029 | TCONS_00056894-exon-scaffold_284-1575043694:1158848..1159029 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1491911889:1160068..1160438 | TCONS_00056894-exon-scaffold_284-1491911889:1160068..1160438 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1510915933:1160068..1160438 | TCONS_00056894-exon-scaffold_284-1510915933:1160068..1160438 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1575043694:1160068..1160438 | TCONS_00056894-exon-scaffold_284-1575043694:1160068..1160438 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1491911889:1160796..1160912 | TCONS_00056894-exon-scaffold_284-1491911889:1160796..1160912 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1510915933:1160796..1160912 | TCONS_00056894-exon-scaffold_284-1510915933:1160796..1160912 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1575043694:1160796..1160912 | TCONS_00056894-exon-scaffold_284-1575043694:1160796..1160912 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1491911889:1161559..1162679 | TCONS_00056894-exon-scaffold_284-1491911889:1161559..1162679 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1510915933:1161559..1162679 | TCONS_00056894-exon-scaffold_284-1510915933:1161559..1162679 | Clytia hemisphaerica | exon |
| TCONS_00056894-exon-scaffold_284-1575043694:1161559..1162679 | TCONS_00056894-exon-scaffold_284-1575043694:1161559..1162679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1158848..1162679 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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