TCONS_00056886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056886
Unique NameTCONS_00056886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056886 ID=TCONS_00056886|Name=TCONS_00056886|organism=Clytia hemisphaerica|type=transcript|length=353bp
CTTGGAGTTATCCGTGCACATTTAGAAAACGAATCAagctcaaaaacaca
aagaagtCAGAGATTGATTACAGTGAGAAAAGCAGGCATTGTCCATATCT
TGATACAATCAACAGaactgttttggattttgattttgagaaacTCTGCT
GTGTTTCTCTGTCTCATCTCAATGTTTATGCATGTCTTGTTTGTGGAAAA
TACTTTCAAGGAAGAGGTCAGAATTCTCATGCTTATACACACAGTGTTCA
TATTGGACATCATGTTTATTTAAATTTACACACATTGAAGTTTTACTGTT
TACCGGATAATTACGAAATTATTGATTCATCCCTGGAAGAtataaaggtt
tgt
Run BLAST on NCBI

transcript from alignment at scaffold_284:1104916..1114928+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056886 ID=TCONS_00056886|Name=TCONS_00056886|organism=Clytia hemisphaerica|type=transcript|length=10013bp|location=Sequence derived from alignment at scaffold_284:1104916..1114928+ (Clytia hemisphaerica)
CTTGGAGTTATCCGTGCACATTTAGAAAACGAATCAagctcaaaaacaca aagaagtCAGGTAGATATTGGAGAAGAAAAAGAATTCTCATTAGAAGACC CTCAGAGAATAGGCGAATCCCCATTAGAAGAGGTCTCTATTAGACAAGAA GACCTTCTAGAAGCCAGAAACCCCCCATATGAAGAGGTCTCTACAGGGGT AGAAGACCCTCATAGAAAAAGGCAAAATCTTATATTAAAGGACTTAGATA TACTTAAAGAACGTACTGATTGTTTTGTAACTGAACAAAAGAAAtacatt aaaacattaaaactcATAACGAATGCGTTAGAAGAATTACTCTTGCATGA GAGTTTAGAAACGAGTGTTGACTTAAGAAACTCAAGAATTGACGTACTAG AGACTCTTGAAAAAACCGAAATCAATCAAGCGCGCGAAATATTGATAGAG GTCGATTTAATTCAAGGTCAAATTAACTCTCAAGAAAAAATTTTACAAGA TTTGATAAACACCACTCGAGCTAGaccttttttcgagttagcaTACGAAT TGAAATACATTGAAAATACCTTTTTCGGCACCAGCGAAAAGTTTGACAAT TTAGTAAAAGAAATAAAGGAAACCCATTCTACCCTGCGAAAGAGGATAGA AAACCAACGAGCACGAATCTCTGGTAGCCCTGAGCCCCCTGAACCTGTAG ACATATCGACACCAGCTTTGCCAAATTTCAGATTCTCACACAAAGAGAGA AAAACTTTGAACTTCAAAGACCCTGAGGTTGCTGAAGACCCTGAGGTTGC TGAAGACTCAATGGCTGAAGCTCAACTCCCTTTCTCTGCCTTATTGGCTA GTAACGTAGACATTACTGCCCTTCCCAAATTTGGACTAAGTCAAAATGAT GATATTATAGAATTTTTAACTAAATTAGATTTATCTTTGGCTTTCTACCA TCTTACGGATGAACAAAAAGCCAGAATCATCCCTCTTACCCTTAAAGAAC GTGCTTATACCTTCTATCTAACGCTGAACCAGAGAATCAAAGATAAttat catcttttaaaagaagcCTTGAAAAAGGAGTTTGATGCCCCTGAACTTAA ATACAGAAAAAGACAAGAGCTTCATGGCATCAGGCAAAATGGAGATGCCA TATCCCATTACCTTTCCCGGGTagaaaaactttcacaaaatctTGGAGTA ACCGATCAAACAAAACTAGATATAATGATTTCTGGGCTGGATGTGCCTTT TCGGCGCTATATCCAGATGAAGCAGCCTAGGTCTTATAGTGAAGCAACcc acaaactgcttttgaaagaATCTGTTAACCCTCCCCAGGACAATTCTTCA ACAATGAACCATATATTAGCTGCAATAGAGTCTTTAAAACCTGCTCAAAC TGCTCAAACGAGAAGTAACTCCAATAATTCATCCCCACGAAAAACTCAAG CTATGACTTGTCATTATTGTAATAAAGTAGGTCATTCAATGAGAGACTGC CATTCAAGAAAAAGAGATCTCTCATCCCAAACAAACTTCCGTCAAAACTC CAAATATTCAAATAGACCTTCCAGAGGAAAACCTTTTTCAAAGTCTACCA AGAATGTTGAATGCTATGCTTGCCATAAAATGGGTCATTACTCAAACAAT TGccctgaaaaaggaaaaacagaATGACTAGGCAAAGGTATAGGAAACAC TGAGGAAGTTATATTGTTAAAAATCGATAATGTAAAATGCAATGAAACTT CAAGAAAATTAAGATCAGTGTTTTGGACCAATATTTGTAGTAAACCTTTG CAAACACTTATTGACACCGGGTCCTCAATTACAGCTATGTCTTATAAGAC CCTTAATAACTTCAAAGATACTTTTTACAAAGCAAATATCCCACCTAGCA AAGTTGAAATGGCTAATGGAGATTATGAAACTGCTATTGAAGTAGTCAAT CTTCCTATAACCATAGGAGGAAAAACATTCTTCCATCCCACCCATGTATT TAAGAATTTACCATTCCCCTTACTATTAGGAGATGATTTCCTCGAAGCAA ATCAACGAGAGTTGAATTTTAATGGTTCCACGGCAGAGCTAAAATTAATT GACAGTGTAGAAaataatttagattttattGATGGCAATGCGAGTGTTTT AAAATTACCATCTTCCAGCCAAATGGTAACTCCAGATGAACCTCTGGTTT GGACAACTGAAGTCCGGAAATTTCCTCCACGGACTCTAACAACAATTACC TTACAAACAAATGATAGGttaattgaagatttttttatatttaattgaaa ataacaGTTCAGAAGAAAGCCTTTTGATCATAACTCCCCAGCTTTCAAGC TGTGAAAATAACAGCCTAACTATTTTCGTGGCGAATCCCTTGAAAAACGA GGTAGAAACTATGCTGTCTCTCGCTACTACACCAGTAGAGACTGTGAAAG AACCTAATTTTGAAAGACCAAAACAACCTGAATATGAGCCTTACCCCCTA ACAGAGGAACAGAAAAAGGAGCTAGAGGAGATACTTGATGAGTATAAAGA TGTGTTAGCAAGCAAGGATGATCCCTTAGGTCAAACCGATAGAGTTACAC ATACAATAGTTACTGAACATGAACAACCCATTAGGCAGAAACCTTATCGC CTCTCTCCATCCCAAAAGGAAAACCTTGAAGTAGAacttgaaaatctttt gaaaaaggaTATAATACGACCATCTAGTTCAGCTTGGTCGAGCCCGATTG TGTTGATTCCCAAGAGCGATGGTAGTACCCGAGTCTGTATAGACTATCGG AAGCTAAATAAAATTACCATCAAGGACGCGCATCCCCTACCAAAAATTGA AGAGATATTAGATCATCTTAACGGTTCTAAAATATTTACTACGATAGATT TGTTAACCGGTTTTCATCAAATACCAATGGATAAGGAGAGTATTCCTAAG ACAGCTTTTGTAACTCACAAAGGCTTGTTTGAATACCTCCGAATGCCTAT GGGTCTTACGAACGCGGTAGCGTCCTTTGAGAGGCTAGTTGAACAAGTCT TTGCATTAGAATTATGGGTTTTCCTCTTGCTTTATGTAGATGATTTGATT ATCTATTCAAAATCCCCCTCTGAGCATCTAAAACAAATACGTGTAATTTT ATCAAGACTACGAGAGAATAAATTACAAGCTAAAGCTAGCAAATGTCGTT TTGCCATGAGACAACTCTCTTTTCTTGGTCATGTTGTAAATGAAAATGGC ATATTACCGCTAGATTCTAATACTGCTGCAATCAAAAGCTTTGATTATcc gaaaaatgtaaaagaacTACGATCATTTTTAGGAATGAGCTCATACTACC GAAAGTTTATTCCGAATTATGGAAAAATAGCGAGATCTCTGACCACTCTT TTGAAGAAAGATACTCCGTTTCTATTAACAGATGAAATGAAGAAAGATTT CGAtactttaaaaatgaaattgataACACCGCCCCTTTTGCGCTACCCCG ACTACGAGAAGACGTTTGTTGTAGTTACTGATGCTTCTAAGTATGCTATT GGCCATATAATAGCTCAGGAAGTTTCAGGAAAACACGTCCCCATAAGATA CGGTGGTAGAACATTGAAGTCAGCAGAAATTAACTACACAATATCCGAAA AGGAAGCCTTAGCCTTAGTTCATGCCATTCAGAAAAATCATCATTATCTT TATGGAAGGCCATTCATTGTTTATACTGATCATCAGCCGCTACGTAATAT GGTAAATAGCCCTGAACCGACTGGTAGGATTTGCAGGTGGGGATTGACCC TCCAGCAATACGACTATGTCGTGAGATACCTACCTGGAAGTCAAAATGTA GTTGCTGATGCCCTTAGTCGTTTGAATAATATTCACCCAGACGTTGATGA TAACGAAATCCCTAGAGTAAATCTTATTGATCATGAAAAATCACAACCGA TATCATGTGTCATATTGCCTAACGAAGCCATGGTAACGGAACAAGACAAG GACCCTGATATTAGAAAGATAAAACTAGAACTAATGGCTAATGACTCCTC CCCTTTACATGACAAATTCGTAATCGATCAAAACTTCTTATTTCGAGTGA ATCCGCTTAACACTGATAACGGAAAAAGACAATATTTCGTTCCTCGTCAT AAACATTATGAAATGATTGACAAATTTCACTCCCCAAATCACATGGGTCA TTTCGGAATCAGTAGTACAATCAATAAACTCGCTGAAAGATATTATTGGA AAGGACTTGCTAGAGATGTTACGCATTTTATCAATAATTGTACCGATTGT AATATTCACAAAGNACAATCAATAAACTCGCTGAAAGATATATTCGAAAG GACTTGCTAGAGATATTACGCATTTTATCAATAATTGTATCTATAGCAAT ATTCACAAAAGAAAGACTAATAAAGCTCCTGTCTTTTCTATCCCACTGAC CCCGCCTTTTAGTAACATTGTCTGTGATGTCCTTGGCCCATTTACTCCAA CAAAAGATGGAAATAGGTACATAATATCGTTTATGGATCGATATTCGTCC TGGCCTGAAGCTTTTgcagtaaaatcaaaaattctgaTATGATACTATGA CAGCCCAACCAAGTGAAAAACCATGATTACGTCGACATTAAACCTATATC TGAGCCTGTCACTATACAGAAAATAGGTAATTATATCCATATTCCCTCAC TAGAAATAGGAGGTGAGATCTCGTTCAATCATCCTTTGAGTTCCCATGAG ACCACTACTAAAGGTAAATGGTTTACACTTGATAATGGTATCATTATCGA GGGCAACGGAACTCGATTTGATTATAGACAAGCCTCCTTCaaaaagatag tatttcttGCCAAAAAGTTTTCTAGAGAACAAGGACTTCCCTTGGTACAG GCGCACCtaattgaaaatttgataaacataAAAGAACAAACCTTACACGA GGCAAAGCGAACATGTTTTATTCAAAAGGAGATTAGGTCTATTCACCAAT GGCTTTCCAACCATTTTCCTGACTTGGTCGCAGAATTGGTATTTGGCAGA AATGACATAGTTGCTCACCCAGCTGGTGATGCATATGAAGTCAGTGAATG CCGTCCCGTCCATTATACTTGTGTAAAACTGGATAGGAGGTCTAATAATA CCAAGCTGAACAACTCTTGTTTCCAATATTTCCCTTTACAAACTCCGGAT TCTGACGTCACGCAATATATTCAAATACCTTCACGTAGAGCTCATTTTCA TTCTCCACAAATAAATTGCGATGACTTGCCCAAACAAACAGTGCTGCAAA CAAACCAAGGTCCGATTGCCGTTAGCCCAAATGGTCATTATAAAATGATT AACCTAACAAAATCTTCGTACTCCCCAAAACTATGGATGACTCCTTTAAA ACACACATATGGATATTCATCTAGAATATTCATAGATACACCAAAAAGAA TAGAACCATATcctcttcttggaataatgtctCAAGTCCATGAAAGCATG AGACAACTACAAGAAAAGGTTGATCAAACTTCCCAACACTCATCCCCTGA CATCTTCAGCAGCATTACCTCGGCAATAGGCACGTTGTTGGAATCAGCTG GTGCTGGAACAAGTAAAGTAATCAGTAGCTTGGGTACCAGCATAAAAGCT GCTGCTGAAGGTGCAGGAACGCTAGGAAAAGATGTGATTTCCAGCTCGGG TGAGGCGTTGGCAGAAACTATTCAGGCAAGTGGATCTGCCATCAAAGACG TGGAAGATGGTAGTGCGAACATCATAGACAGTATATTGGGTGGAATCCAC GGAATATTGGGCATGACCGCTTTGTTGCTTGCAGTTTTGGTGGCAACGTA TCTTGCTTATCAAAAACATCAAGAAAGAAAGGAGAAGTCCAAGAAGAAAC AGCAGATGATCGAAGGAATAGTAGCCGATCCAGTATTGCTACAAAGATTG ATGGAGCAGTTGGAAGAGTCAGGATTATGAAATCCTATATGTAACCTATT TAAATCTATTCTATTCAACGGCATAAGTTAACTTATCGTATTATCTACCA ACTAATCATGATTAACACGTTATCGTATGAAGCTTCACCTTTCTCTTTAT ATGTTCTAACAAATTTAGTCTTACAACTCAATCTAGTTACTAAATCGATT CGCAATGGAGATGGTTGAAGAATTCGTGTTCGATGTAGACGAAACATNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT ACATAACTTGGAGTAGTATGTCCTTAAGACAGTGCTCATTTCCTACAGTT CGTTCGTAATTCCGATCATCTAAGACATAAGAAAGCGGTGTGGACCTTCA ACACAGTCAcaatcacaaaaacaaaatcaagaattgaaaaattggacatC CATTGGAATCGAACTCGGAACCCCATGCACATGAGACAGACGATCTAACT GCTTGAGCCAACCACGCTTTGTAGGTAGTGAGGGAAAGCgtgaactgata agaaagaaaaaggaaagaaagaaatgagaagaaaattaattcccgctttg atgttattatcgaaacaaaaggatcagtcatgccgaaATTCTNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcc acacgtcagcaatctagtttctataaatatgaaaactagattgtaaggaa gattctaaaaaataatagctgttttcttagacgactacgttaactataaa gtgcactcacAATCAttaatttgtcagatctaacaaaatgaataatgaaa atgtCATCAAAGGACAATCAAACGAAGGATTTTCCGTCAAGAACCTTGAA AatattccaacaacttccatcaaaatgatctgcCGCAGAAAAGTTctact attttgaaaaaaaaaccttaaaaacaaCATATGCTGTTTGAGAATTTGTC TGGGTTGACAATACAAACTATCTCACgactgaaaaaattttaatctgtca atcattttctcaagcgaagagtacaaGAAAcaattctagctttacaatag tgtcacagatcatcagtggatagtgttcaattattattattcctttattt tcatttgtggaattttcacaaaaaaaggtaaaatacaaaagttgtatttt ttactgctctattcacatactgcaTTTGAAAGATATTCTATATAGCGTTT TTttacaaacttcaaaaaactgatttttgtctgGCTTTTGCAGGACTTTA GCTTTAAGTGCTTAAATGCAACATTGGGTACAAAGTCCCAATTTGTCTAT GTAAATTCTGGTGAATTTTGTGTGAAAAGTTAGGGTTATACTATTTTGTT TGCAACAACAATAACAAGAGTTGCAAAGTTCCAAATTCCAAGTCAATTAC ATAAAAATTAGaaacttgaaataaaataaaagaacacATTATTAATGTGT GTCAGCCTGCTAATCAATGGACCAAAATGTATTATCAATATTACCAAGAC GGACTTTGGGAGAATGTTACGGGCTATAGACCTTTTTGTAGCATCTAGGT GCAATGTCATGTtggataattaaaaactccagcaccaaaacaatgataag aaaaaaattagtgCGCACTCATTATGCATTAATGTGTCATTGCAGGTATT TGTGTtaatgctggattttttaattACCCAACGTGACACCGATCAAAAGG TCTACTTATTAAGCCTCAGCCTGTACAAATGATATAATGGTTCAAAAGGG CCAGATTATTTTCTCATAATTTAATTTATAAGTTTTACAGTGCATTATTG TTGCTTTTATGTCAAGTAAATGATCTGGAAAGATAAATaatgtattttta ttgtttttgtttcagAGATTGATTACAGTGAGAAAAGCAGGCATTGTCCA TATCTTGATACAATCAACAGGTAAAggctgttgtttttgtttgtaaatTT ACAATATctactgaaatatttttttacatcaTAGATAAGAAATTGTAAGT TAGACCAATCGGAAATCAATCTATTCaatctttttgtttataaaacaaGA AAACATACCATCTTATGTATCGTATGTTTTCATAGACAATCAATACAATT TGAAGAACGTTTTAAAGGAAATCATTTTGTTGATTAAAGATAAagtcaaa ttgaaaaaaatatatgattAGGCACATGTTAAAATCACTTTCTGTCAGCA AATTTTATTGATCAAACAGTTTTTATTGACtgtcaatatattcttttagt tttcaagaaaattgatttacAGTCAATGTAAAATTATTTATGTTAATAAT TTGTACATATTTAACAGTCAATACAATTGTTAATGCTCATAAAAACTTAA TGGCAGTCAGtgaaaaacattgaacatgCCAAATCAACGTTTTTTGAGCA GGTACACTACTACACTCTTTACCTACATGGTGACTATTGATAatgaataa taataatgaagtttctattttcagaactgttttggattttgattttgaga aacTCTGCTGTGTTTCTCTGTCTCATCTCAATGTTTATGCATGTCTTGTT TGTGGAAAATACTTTCAAGGTAGTTTATATTTGTCTTTCAAGACCAATCT CTGGTTCGATTTTATTGCATCTTCTAACCTAGAGAGAATCTAGGATATTG CATCTTTCATTCATAGTACTATAAGagagaaaaaatttctttcttattaA TTTTCCCTTGGTTGTAGAAACTTCTTCCTTTGTAAAGTGAATTGTAAGCC TCCTGGTTCAGGAGAATTTAAAGATTCACCAATTCACCAAggttttactt tttatattGTTACACAGCCAAAtgtcaaattctttttttaatttaaagaa TTTCCACGTTTCAGGAAGAGGTCAGAATTCTCATGCTTATACACACAGTG TTCATATTGGACATCATGTTTATTTAAATTTACACACATTGAAGGTATGt tgttaaaataattttctcatcTCAGGATTCTTCAGTATGTCATTATTCTG TCATTCATCTTGGAAAGTATGCATAGTTTTTGTGGTAGTTGTTGTTGTTA CTGTATTGCTATCAACAATATTTTGCTACAAAGTTAAAGTCACAGGATTC ATCTTCTACTTttattgaataaattttagaaTGTTTTACCCTTTTTATAG TTTTACTGTTTACCGGATAATTACGAAATTATTGATTCATCCCTGGAAGA tataaaggtttgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035838XLOC_035838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056886-exon-scaffold_284-1491911889:1104916..1104975TCONS_00056886-exon-scaffold_284-1491911889:1104916..1104975Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1510915933:1104916..1104975TCONS_00056886-exon-scaffold_284-1510915933:1104916..1104975Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1575043694:1104916..1104975TCONS_00056886-exon-scaffold_284-1575043694:1104916..1104975Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1491911889:1113581..1113635TCONS_00056886-exon-scaffold_284-1491911889:1113581..1113635Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1510915933:1113581..1113635TCONS_00056886-exon-scaffold_284-1510915933:1113581..1113635Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1575043694:1113581..1113635TCONS_00056886-exon-scaffold_284-1575043694:1113581..1113635Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1491911889:1114190..1114284TCONS_00056886-exon-scaffold_284-1491911889:1114190..1114284Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1510915933:1114190..1114284TCONS_00056886-exon-scaffold_284-1510915933:1114190..1114284Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1575043694:1114190..1114284TCONS_00056886-exon-scaffold_284-1575043694:1114190..1114284Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1491911889:1114580..1114659TCONS_00056886-exon-scaffold_284-1491911889:1114580..1114659Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1510915933:1114580..1114659TCONS_00056886-exon-scaffold_284-1510915933:1114580..1114659Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1575043694:1114580..1114659TCONS_00056886-exon-scaffold_284-1575043694:1114580..1114659Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1491911889:1114866..1114928TCONS_00056886-exon-scaffold_284-1491911889:1114866..1114928Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1510915933:1114866..1114928TCONS_00056886-exon-scaffold_284-1510915933:1114866..1114928Clytia hemisphaericaexon
TCONS_00056886-exon-scaffold_284-1575043694:1114866..1114928TCONS_00056886-exon-scaffold_284-1575043694:1114866..1114928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1104916..1114928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 22.1906 11.7317 36.0096 25.8301 1.55395 5.98097 0 3.53553 0.767529 0 0 0 0 0 0.799475 0 0 0 0 0 8.50637 21.3836 0 0 0 0
Blast
BLAST of TCONS_00056886 vs. Swiss-Prot (Human)
Match: SNUT2 (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.046e-51
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 3
Query:   27 KRIKLKNTKKSEIDYSEKSRHCPYLDTINRTVLDFDFEKLCCVSLSHLNVYACLVCGKYFQGRGQNSHAYTHSVHIGHHVYLNLHTLKFYCLPDNYEIIDSSLEDI 344
            + ++ KN +    D   +SRHCPYLDTINR+VLDFDFEKLC +SLSH+N YACLVCGKYFQGRG  SHAY HSV   HHV+LNLHTLKFYCLPDNYEIIDSSLEDI
Sbjct:   86 REVRAKNGRVDSED--RRSRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189          
The following BLAST results are available for this feature:
BLAST of TCONS_00056886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNUT22.046e-5174.53U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
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