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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056884 ID=TCONS_00056884|Name=TCONS_00056884|organism=Clytia hemisphaerica|type=transcript|length=3647bpRun BLAST on NCBI protein sequence of TCONS_00056884-protein >TCONS_00056884-protein ID=TCONS_00056884-protein|Name=TCONS_00056884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp MRGSKMTLDADSSCKIRLLDDVELSYEFKKETKGHELFSFVCEQLSLLEIRun BLAST on NCBI transcript from alignment at scaffold_284:1022089..1046712+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056884 ID=TCONS_00056884|Name=TCONS_00056884|organism=Clytia hemisphaerica|type=transcript|length=24624bp|location=Sequence derived from alignment at scaffold_284:1022089..1046712+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:1022089..1046712+ >TCONS_00056884 ID=TCONS_00056884|Name=TCONS_00056884|organism=Clytia hemisphaerica|type=CDS|length=23016bp|location=Sequence derived from alignment at scaffold_284:1022089..1046712+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056884 vs. Swiss-Prot (Human)
Match: FRMD5 (FERM domain-containing protein 5 OS=Homo sapiens GN=FRMD5 PE=1 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 2.764e-92 Identity = 165/408 (40.44%), Postives = 243/408 (59.56%), Query Frame = 1
Query: 382 TKKMRGSKMTLDADSSCKIRLLDDVELSYEFKKETKGHELFSFVCEQLSLLEIDYFGLRYVDANKQRHWLDPSKEIIKQLKECRPQYMFFFRVKFYPTDPTKLREEITRYQLYLQLKRDILHGRLLCPFNNITDLAAHIVQAELGDFDEDEHGTTYLSGIKLLPRQNEKLEEKIIEYHKS-LVGYNPAEAERRFLNLARSQDLYGVDPHPCKDHEDFPLYLGLTPQGIQIIREARRVFGIGWTEVSKVSYENKHFYIQVVSEKKKKNYAFRLTDTP-ACKHLWKCAVEHMTFYSEEPVKTQVPRRSALSPQNIFRRSKYKFSGKTESELKNESENIRRTTPPTIQRKSSL------------RLSIQANNRKSCISMPDLEQIQAKFRNTPKDERNGTGNRVENGGDS 1563
++ M GS +L+ + SC +RLLDD E + +++ KG LF +C L+LLE DYFG+R+VD +KQRHWL+ +K ++KQL+ +P + FRVKFYP DP L+EEITRY ++LQ+KRD+ HGRLLC ++ LAA+I+QAE+GD+D +H Y S + P+ +EKLE KI E HK+ L G PA +E FL A++ + YGVDPHPCKD +L TP G +++ +RV I W EV+K+ +E K FY+ V +++KK TP ACKHLWKC +E+ FY E +QV R+ S F+ S++++SG+ E+ S I+R PP I R + RLS R+ + + +E +++ +D + T R + GD+
Sbjct: 3 SRLMSGSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFDLLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRS-QPPFTMCFRVKFYPADPAALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYILQAEIGDYDSGKHPEGYSSKFQFFPKHSEKLERKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPHPCKDVSGNAAFLAFTPFGFVVLQGNKRVHFIKWNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEK-SSQV--RTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKR-EPPEIHRAGMVPSRSCPSITHGPRLSSVPRTRRRAVHISIMEGLESL-----RDSAHSTPVRSTSHGDT 400 The following BLAST results are available for this feature:
BLAST of TCONS_00056884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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