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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056863 ID=TCONS_00056863|Name=TCONS_00056863|organism=Clytia hemisphaerica|type=transcript|length=3015bpRun BLAST on NCBI protein sequence of TCONS_00056863-protein >TCONS_00056863-protein ID=TCONS_00056863-protein|Name=TCONS_00056863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp MYRLKLLQKGKWISSLQTSRGLQATATVLSDRVVGNKKIKDKVEVAVIGGRun BLAST on NCBI transcript from alignment at scaffold_284:422044..447655+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056863 ID=TCONS_00056863|Name=TCONS_00056863|organism=Clytia hemisphaerica|type=transcript|length=25612bp|location=Sequence derived from alignment at scaffold_284:422044..447655+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:422044..447655+ >TCONS_00056863 ID=TCONS_00056863|Name=TCONS_00056863|organism=Clytia hemisphaerica|type=CDS|length=38925bp|location=Sequence derived from alignment at scaffold_284:422044..447655+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056863 vs. Swiss-Prot (Human)
Match: M2GD (Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens GN=DMGDH PE=1 SV=2) HSP 1 Score: 1017.3 bits (2629), Expect = 0.000e+0 Identity = 473/814 (58.11%), Postives = 611/814 (75.06%), Query Frame = 3
Query: 522 KDKVEVAVIGGGCVGASITYHLARQGTKDVVLLEKSELTAGSTWHAAGLTTTFHPGINVKHLHWYSMNFYPQLEKETGQIVGFHRPGSIRILSTNDRVNEAKYQLSRGGWHSAYMKFMNPDEIHEMVPYMNMDGIHGGIWTPGDGHTDPYSLTQAFAIGARKWGAEIYLSSPVEGLTQKEDGTWDVQTPHGMINAKHVVNASGFWGREIGKMVGVEHPLIPIHHQYLVTSTIPEVQQCKHEIPVMRDLEGSYYLRQEKQGLVVGPYERAEKMRLQDDW-WDGVPPGFGKELYESDLDRIMENVEVAMERFPCVKDADIASVVSGPITYTPDILPMLGPMPEVHNYWCAIGFGYGVIHAGGAGKYLADWIQNGEPTYDLNELDPGRYGKWTNREYVLAKARESYGFNNLVGFPKEERYAGRP-MRLSPFYEKLKAAGAQHTFSAGWEVPKWYAQDGDDASYKPSYFRTNWHEPVGREIKNTMENVSVADISAFAKISIKGNGATKFLDYMVANKLPKIGKSNVSHMLSPKGKVYAEVTVSTLSDNHYYVITGGGVEYHDIRWLQEHA-RNFSDVQITNETDDFATLSINGPKSRALLQELADSDVSENGFKFMENKHMKVGGIDVLALCVSYTGELGWEFYVANDQASALYDAIMDAGQKHGIGHIGGYAINSMRLEKGFRLWGAEMNMDVNPYAAGLDFFIKLKK-GDFIGRDALIESRKSIPTRRLVAMVVDTDNIDPEGNESIWYMGKVVGNTTSGCYSHNFGTSICYAYVPTYLDPVGSQLEVELVGKKYKCTIVEEPFIPMEASRRRMKK 2951
KD+ E +IGGGCVG S+ YHLA+ G KDVVLLEKSELTAGSTWHAAGLTT FHPGIN+K +H+ S+ Y +LE+ETGQ+VGFH+PGSIR+ +T RV+E KYQ++R GWH+ + P++I EM P +NM+ + G++ PGDGH DPYSLT A A GARK GA + +PV L + DGTWDV+TP G + A +VNA+GFW RE+GKM+G+EHPLIP+ HQY+VTSTI EV+ K E+PV+RDLEGSYYLRQE+ GL+ GPYE EKM++QD W +GVPPGFGKEL+ESDLDRIME+++ AME P +K ADI +VV+GPITY+PDILPM+GP V NYW AIGFGYG+IHAGG GKYL+DWI +GEP +DL ELDP RYGKWT +Y AKARESYGFNN+VG+PKEER+AGRP R+S Y++L++ F AGWE P W+ + G D Y+PS+ RTNW EPVG E K M+ V+V D+S F K +IKG + + LD++ AN +PK+G +N+SHML+PKG+VYAE+TVS S + +ITG G E HD+RW++E A + DV+I N TD+ L + GP++R +LQ+L D+S++ FKF++ K +KV I V A+ +SYTGELGWE Y + + ALYDAIM+AGQ+ GI + G YA+N++RLEK FR WG EMN D NP AGL++F+KL K DFIG+ AL + + RRLV + + TD++DPEGNESIWY GKVVGNTTSG YS++ S+ +AYVP L VG Q+EVEL+GK Y I++EP + E +R R++K
Sbjct: 47 KDRAETVIIGGGCVGVSLAYHLAKAGMKDVVLLEKSELTAGSTWHAAGLTTYFHPGINLKKIHYDSIKLYEKLEEETGQVVGFHQPGSIRLATTPVRVDEFKYQMTRTGWHATEQYLIEPEKIQEMFPLLNMNKVLAGLYNPGDGHIDPYSLTMALAAGARKCGALLKYPAPVTSLKARSDGTWDVETPQGSMRANRIVNAAGFWAREVGKMIGLEHPLIPVQHQYVVTSTISEVKALKRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKVQDSWVTNGVPPGFGKELFESDLDRIMEHIKAAMEMVPVLKKADIINVVNGPITYSPDILPMVGPHQGVRNYWVAIGFGYGIIHAGGVGKYLSDWILHGEPPFDLIELDPNRYGKWTTTQYTEAKARESYGFNNIVGYPKEERFAGRPTQRVSGLYQRLESK-CSMGFHAGWEQPHWFYKPGQDTQYRPSFRRTNWFEPVGSEYKQVMQRVAVTDLSPFGKFNIKGQDSIRLLDHLFANVIPKVGFTNISHMLTPKGRVYAELTVSHQSPGEFLLITGSGSELHDLRWIEEEAVKGGYDVEIKNITDELGVLGVAGPQARKVLQKLTSEDLSDDVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSVALYDAIMNAGQEEGIDNFGTYAMNALRLEKAFRAWGLEMNCDTNPLEAGLEYFVKLNKPADFIGKQALKQIKAKGLKRRLVCLTLATDDVDPEGNESIWYNGKVVGNTTSGSYSYSIQKSLAFAYVPVQLSEVGQQVEVELLGKNYPAVIIQEPLVLTEPTRNRLQK 859 The following BLAST results are available for this feature:
BLAST of TCONS_00056863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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