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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056848 ID=TCONS_00056848|Name=TCONS_00056848|organism=Clytia hemisphaerica|type=transcript|length=1397bp
ATTAAATATTCGCAGGACATGAAGAATTTACCCGATTACGTTGATTTTAA
ACCGTTCCCACGAATTCCATTTTCGGAGATCTTCTCAGCGGCCAGTGACG
ATCTGTTGGACCTGTTGGAGAAATTGTTTTTGTATGATCCTGTCAAACGA
ATAAATGCCACTGATGCTTTGAAGCATCCTTACTTTTCCAATCGACCAGC
TCCTGCACCAGGGTCACAGTTACCACGCCCTGGTAATAAGAAGGAGGAAA
AAGTGCTGACCGGTGCAAGTCACGCGCTGAAGAGAAAAATTGAAGATCCT
TTTGGCCCTgaTATAACAGCTAAGAAATTGATTTTCTAAAGTTTGAAAGA
TTAAAGAAGAAGTAGACAAGATGGTGCAAATGGTTTCAATCAGTCTACCA
AACTGAGAAAGCCTGTGTTCTAGACATTTAGTTACTCATTACTTTGAAAT
GAAAGGCGTATATTTATGAGAGATATGAAGGACTATGAGCATCATACACG
CACCGATCTTACGAATAACCAGTTCGCCATTGTTATTAAGGAAACCAATG
AAATTATCggtcaaaaaaatatatatatttcttGATAGTGGTCATATAGA
AATTCATTGGAGCTGACGGCGATTGTGTTATTATTGGTGACAAATTTATT
GTAGGGAATAAAGTTGGACTTCATATGGACAATCGTTTTGCCCTCTTTTA
ACCTACCTCAGGTAAAGATGGGTTTTAGGGAGTAAAATCTCCTTAAATGT
TCTACCGACTTCTTACAGAGTTGCATTCCGACCCAGAGGAAATAACCAAA
TTAAATACAGGCAAATTCCTCTAATTTGAATTTTCCTGTGTCTTTCAGTC
TTTTCACTTGGAAAGTGGATTAAAGTATTCCCTGCAATCTCCGAATCTGT
TGATGATTTTCTATCCTTGTTTATTTTTCGGTATAAAGGTTTCCCCGACT
AAAACGAAACCCGACTAgacaaaaaatgataaaattggcCACCACTGGCA
AAACCCgaggtctttccgtagaaaacattacgtcatgaatatcatgaata
tttacATTGCGAGGTATTGATTCGTGAAACTACTACAAATGTCCGTccgg
ttttttgtttttgtaaatttatttaGAAAACAAGGGCTTTTtatatttgt
ctttttttagatAATTTGTTATTGTTTAAGTTGTTACTTTTTTTTCGAAG
AGTAAACATATTCCAAAAACGAATGAATATATGTCTCTTGTGAATGTGGG
TTGGTACGGGTTGCTTATTATTGACTTTGTCCGAAAAGATCTATATACTT
TTACGATCACATCTTGTATTTTATGGAATTTTTGTCATTGCATTGAAATG
TGGACGGGAAAAAACCGTTGACCCCTAATATGGAAccttggtaaaaa Run BLAST on NCBI protein sequence of TCONS_00056848-protein >TCONS_00056848-protein ID=TCONS_00056848-protein|Name=TCONS_00056848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
IKYSQDMKNLPDYVDFKPFPRIPFSEIFSAASDDLLDLLEKLFLYDPVKR
INATDALKHPYFSNRPAPAPGSQLPRPGNKKEEKVLTGASHALKRKIEDP
FGPDITAKKLIF Run BLAST on NCBI transcript from alignment at scaffold_284:200696..203589+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056848 ID=TCONS_00056848|Name=TCONS_00056848|organism=Clytia hemisphaerica|type=transcript|length=2894bp|location=Sequence derived from alignment at scaffold_284:200696..203589+ (Clytia hemisphaerica)
ATTAAATATTCGCAGGACATGAAGAATTTACCCGATTACGTTGATTTTAA
ACCGTTCCCACGAATTCCATTTTCGGAGATCTTCTCAGCGGCCAGTGACG
ATCTGTTGGACCTGTTGGAGAAATTGTTTTTGTATGATCCTGTCAAACGA
ATAAATGCCACTGATGTAAGTGCTGCTTTATGTCAGactattaaaggttt
tatttttacataagtgttcccgtttcatatcagacacatatttcatatca
ggacagtgtctgcctattgttatgttatgctgatataagcaaaaaacgtt
tttctttttctctttctgaccaatcttgctgaGTAaggatatcactctta
tttaaaaacaaaacctttaagtagaTTAATTTACGTGATTTGAGAATCTA
AAATTTTGGCTTGGACACAATTTCAAGAATTGGCCTCTTTTTTGCATTta
acttctttcatttttccaggggttGTTTTGTCCAAAACTcgaattttgaa
tgttttttttgtaagtggccaaaattcgcgaaaatcgtgtaaattaatcc
acgcgaaattctGCTCTCAGCATTTAAAAGTGCTTCTCTACGAGAGGAAG
GCCAAATACCTTAGACTGCCTCTAAAGTCTGTCTTAATATAATTTGCAAC
GTAGACAAAaaaaggctataacttttgttagaattcgaattagatagcgg
ttttgtgcctgttgaaaagacaaacaggagtggaacACTATAATAaagga
aaaactcaaaaataatcGGAAaatgaatattgaaaattaagaagttctaa
gattaaagaatttctgatatgaaaatgaagatcatagcattattctacGA
AAAGTTGATTtccttcttcttcatttttccattttttgaattttttactt
ttttgataatattccactccggattatTTTTTTAGCTAGCACAAAACCGT
tatataatttgaattttatcaaaagttacagcctttttcgtcctcgctgc
aaattatattgagacagactttagtatagGTTTTTGTAGTTTCCTACATA
GAATATATTCGCTGTAAAAAGAATCTACACTGATTTCCTTGAAAGTGGTT
TTCGCATGAAGCTAGTAAAACAGAGTGCACAATTATCTTTCAAGTGATAG
GTCATTCGCCCTAataattttctctttcttttcttaACGACAATTCGTGC
TGTTGCAAAAACACTATGAAATTTAAAGCCTAGAGCAACCATTACTGAGA
AATGTTTAATCTGGGATCAATGTTTGCTATTACGTTCCAGGCTTTGAAGC
ATCCTTACTTTTCCAATCGACCAGCTCCTGCACCAGGGTCACAGTTACCA
CGCCCTGGTAATAAGAAGGAGGAAAAAGTGCTGACCGGTGCAAGTCACGC
GCTGAAGAGAAAAATTGAAGATCCTTTTGGCCCTggtaatagattttttt
ttctggagtACATAGTATGCCATCTACCACAGGGTTACCTAAAGCCATAC
GAACCGCTGAATCTTTTTTGTTGCGCGGTAGTTTTTGAATCTTGTTAAGT
TTGTTTGTAAACAATGTCAAATGCGAATACAAATACATCCCAACTAAGAA
AAGATCGTCACTCTCGAGCACTTTGAATTCGGTTGGGGTTTAAAAAACAA
GGTGGCATACAAGTCACGGCGCTCCAAAATCCAGACCTGTTGGCACGGTA
ACCTTTGTATCGGTTTTTCTCATATGGTTGGTTGCCAGTGGCACTTCATG
GGCTTAATGCCATGATTTCTCCTTTTGATCACCTTGTATCatctttcctt
tttttagaTATAACAGCTAAGAAATTGATTTTCTAAAGTTTGAAAGATTA
AAGAAGAAGTAGACAAGATGGTGCAAATGGTTTCAATCAGTCTACCAAAC
TGAGAAAGCCTGTGTTCTAGACATTTAGTTACTCATTACTTTGAAATGAA
AGGCGTATATTTATGAGAGATATGAAGGACTATGAGCATCATACACGCAC
CGATCTTACGAATAACCAGTTCGCCATTGTTATTAAGGAAACCAATGAAA
TTATCggtcaaaaaaatatatatatttcttGATAGTGGTCATATAGAAAT
TCATTGGAGCTGACGGCGATTGTGTTATTATTGGTGACAAATTTATTGTA
GGGAATAAAGTTGGACTTCATATGGACAATCGTTTTGCCCTCTTTTAACC
TACCTCAGGTAAAGATGGGTTTTAGGGAGTAAAATCTCCTTAAATGTTCT
ACCGACTTCTTACAGAGTTGCATTCCGACCCAGAGGAAATAACCAAATTA
AATACAGGCAAATTCCTCTAATTTGAATTTTCCTGTGTCTTTCAGTCTTT
TCACTTGGAAAGTGGATTAAAGTATTCCCTGCAATCTCCGAATCTGTTGA
TGATTTTCTATCCTTGTTTATTTTTCGGTATAAAGGTTTCCCCGACTAAA
ACGAAACCCGACTAgacaaaaaatgataaaattggcCACCACTGGCAAAA
CCCgaggtctttccgtagaaaacattacgtcatgaatatcatgaatattt
acATTGCGAGGTATTGATTCGTGAAACTACTACAAATGTCCGTccggttt
tttgtttttgtaaatttatttaGAAAACAAGGGCTTTTtatatttgtctt
tttttagatAATTTGTTATTGTTTAAGTTGTTACTTTTTTTTCGAAGAGT
AAACATATTCCAAAAACGAATGAATATATGTCTCTTGTGAATGTGGGTTG
GTACGGGTTGCTTATTATTGACTTTGTCCGAAAAGATCTATATACTTTTA
CGATCACATCTTGTATTTTATGGAATTTTTGTCATTGCATTGAAATGTGG
ACGGGAAAAAACCGTTGACCCCTAATATGGAAccttggtaaaaa Coding sequence (CDS) from alignment at scaffold_284:200696..203589+ >TCONS_00056848 ID=TCONS_00056848|Name=TCONS_00056848|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_284:200696..203589+ (Clytia hemisphaerica)
ATTAAATATTCGCAGGACATGAAGAATTTACCCGATTACGTTGATTTTAA
ACCGTTCCCACGAATTCCATTTTCGGAGATCTTCTCAGCGGCCAGTGACG
ATCTGTTGGACCTGTTGGAGAAATTGTTTTTGTATGATCCTGTCAAACGA
ATAAATGCCACTGATGCTTTGAAGCATCCTTACTTTTCCAATCGACCAGC
TCCTGCACCAGGGTCACAGTTACCACGCCCTGGTAATAAGAAGGAGGAAA
AAGTGCTGACCGGTGCAAGTCACGCGCTGAAGAGAAAAATTGAAGATCCT
TTTGGCCCTgaTATAACAGCTAAGAAATTGATTTTCTAAATTAAATATTC
GCAGGACATGAAGAATTTACCCGATTACGTTGATTTTAAACCGTTCCCAC
GAATTCCATTTTCGGAGATCTTCTCAGCGGCCAGTGACGATCTGTTGGAC
CTGTTGGAGAAATTGTTTTTGTATGATCCTGTCAAACGAATAAATGCCAC
TGATGCTTTGAAGCATCCTTACTTTTCCAATCGACCAGCTCCTGCACCAG
GGTCACAGTTACCACGCCCTGGTAATAAGAAGGAGGAAAAAGTGCTGACC
GGTGCAAGTCACGCGCTGAAGAGAAAAATTGAAGATCCTTTTGGCCCTga
TATAACAGCTAAGAAATTGATTTTCTAAATTAAATATTCGCAGGACATGA
AGAATTTACCCGATTACGTTGATTTTAAACCGTTCCCACGAATTCCATTT
TCGGAGATCTTCTCAGCGGCCAGTGACGATCTGTTGGACCTGTTGGAGAA
ATTGTTTTTGTATGATCCTGTCAAACGAATAAATGCCACTGATGCTTTGA
AGCATCCTTACTTTTCCAATCGACCAGCTCCTGCACCAGGGTCACAGTTA
CCACGCCCTGGTAATAAGAAGGAGGAAAAAGTGCTGACCGGTGCAAGTCA
CGCGCTGAAGAGAAAAATTGAAGATCCTTTTGGCCCTgaTATAACAGCTA
AGAAATTGATTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00056848-exon-scaffold_284-1491911889:200696..200860 | TCONS_00056848-exon-scaffold_284-1491911889:200696..200860 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1510915933:200696..200860 | TCONS_00056848-exon-scaffold_284-1510915933:200696..200860 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1575043694:200696..200860 | TCONS_00056848-exon-scaffold_284-1575043694:200696..200860 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1491911889:201986..202130 | TCONS_00056848-exon-scaffold_284-1491911889:201986..202130 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1510915933:201986..202130 | TCONS_00056848-exon-scaffold_284-1510915933:201986..202130 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1575043694:201986..202130 | TCONS_00056848-exon-scaffold_284-1575043694:201986..202130 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1491911889:202503..203589 | TCONS_00056848-exon-scaffold_284-1491911889:202503..203589 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1510915933:202503..203589 | TCONS_00056848-exon-scaffold_284-1510915933:202503..203589 | Clytia hemisphaerica | exon |
| TCONS_00056848-exon-scaffold_284-1575043694:202503..203589 | TCONS_00056848-exon-scaffold_284-1575043694:202503..203589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:200696..203589 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011009 | Kinase-like_dom |
Blast
BLAST of TCONS_00056848 vs. Swiss-Prot (Human)
Match: CDK7 (Cyclin-dependent kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.304e-17 Identity = 60/108 (55.56%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 16 DMKNLPDYVDFKPFPRIPFSEIFSAASXXXXXXXXXXXXXXPVKRINATDALKHPYFSNRPAPAPGSQLPRPGNKKEE-KVLTGASHALKRKIEDPFGPDITAKKLIF 336
DM +LPDYV FK FP IP IFSAA DDLLDL++ LFL++P RI AT ALK YFSNRP P PG QLPRP E K + + A+KRK + KKLIF
Sbjct: 239 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTPGCQLPRPNCPVETLKEQSNPALAIKRKRTEALEQGGLPKKLIF 346
The following BLAST results are available for this feature:
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