TCONS_00056847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056847
Unique NameTCONS_00056847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056847 ID=TCONS_00056847|Name=TCONS_00056847|organism=Clytia hemisphaerica|type=transcript|length=354bp
NNAATCAAGAACGTTTATTAGAAATTCACATGAAACATATAGAACAATTA
GAATCGGATGAAGCGGACGATAGCGAGGGTGATAGTCTCTCTCTTTATTA
TGATGCTCTTGATTACTTCGACGACCCATCGGACACCCCTATACACCACG
CAAGCACGTCGACACTAACGAAGAATAATATTCACCAACAAGTCAATGGA
GAACCTCCTATAGGAGTTACTCGACCCAAGGTAAATTGAAGCAGTCGGAA
TAGCTTAGCCATGTACAcgtgctgttttttttttttcgtaaaagaacaaa
ctatgtaaaaacataaggcttcgatgatcTATTTAtgaaacattttaaga
atat
Run BLAST on NCBI

transcript from alignment at scaffold_284:199004..199936+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056847 ID=TCONS_00056847|Name=TCONS_00056847|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at scaffold_284:199004..199936+ (Clytia hemisphaerica)
NNAATCAAGAACGTTTATTAGAAATTCACATGAAACATATAGAACAATTA
GAATCGGATGAAGCGGACGATAGCGAGGGTGATAGTCTCTCTCTTTATTA
TGATGCTCTTGGTAAGTTGGTAGCTTAGGTTCTTATCTATCTCTTATTTC
CTTTTTACAAACATAAGCCAAAGATCAGCCAAAAGTAGTTTGGTTGAACA
CTTTTTTGCGAATTGAGAGtcttacaaaaacaaaaacaattaaaaaagag
TTTATGAATTCTCAAGTCAACTATATGATGacagaaaatcaatttttcaa
cgTCTTTCTCGAAGGGAAATCTGCATAGATTTGTGCATCTTTCcgtttta
aattaaaaatagaaaataacagATGCACAAATCCTATGGAATAGGCTAAT
AGCTCTCAAAAGtgtatacaccttttcaaccgtatCCGCCAagtgccgcg
cgggcatttttatccgttttaccaccctaaaaccgtcccagtcttttttt
cgttCCTTAAGACAATATAAAGAAGtgtgaaaaaaatattggatcgagtt
tagagTGGTAAATTAAGTTTTAAACTGggacgcgcctgaccgcgcgacta
cggtcgaaaaggtgtatccgGGTTGCCGCCCAACTGCTgttgcaaactta
cttactactaTTTCTTGTATCGTTGTTTTTCGGACAATAGATTACTTCGA
CGACCCATCGGACACCCCTATACACCACGCAAGCACGTCGACACTAACGA
AGAATAATATTCACCAACAAGTCAATGGAGAACCTCCTATAGGAGTTACT
CGACCCAAGGTAAATTGAAGCAGTCGGAATAGCTTAGCCATGTACAcgtg
ctgttttttttttttcgtaaaagaacaaactatgtaaaaacataaggctt
cgatgatcTATTTAtgaaacattttaagaatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035810XLOC_035810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056847-exon-scaffold_284-1491911889:199004..199114TCONS_00056847-exon-scaffold_284-1491911889:199004..199114Clytia hemisphaericaexon
TCONS_00056847-exon-scaffold_284-1510915933:199004..199114TCONS_00056847-exon-scaffold_284-1510915933:199004..199114Clytia hemisphaericaexon
TCONS_00056847-exon-scaffold_284-1575043694:199004..199114TCONS_00056847-exon-scaffold_284-1575043694:199004..199114Clytia hemisphaericaexon
TCONS_00056847-exon-scaffold_284-1491911889:199694..199936TCONS_00056847-exon-scaffold_284-1491911889:199694..199936Clytia hemisphaericaexon
TCONS_00056847-exon-scaffold_284-1510915933:199694..199936TCONS_00056847-exon-scaffold_284-1510915933:199694..199936Clytia hemisphaericaexon
TCONS_00056847-exon-scaffold_284-1575043694:199694..199936TCONS_00056847-exon-scaffold_284-1575043694:199694..199936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:199004..199936 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.96961	0.521472	2.20197	1.47247	2.13682	3.23396	4.45269	2.27045	2.0574	0	0	0	0	0	0	0	0	0	0	0	2.36426	1.8756	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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