TCONS_00056818 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056818
Unique Name	TCONS_00056818
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2020

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_283:4980..9676+

transcript sequence

>TCONS_00056818 ID=TCONS_00056818|Name=TCONS_00056818|organism=Clytia hemisphaerica|type=transcript|length=2020bp
TTTTAGACACAGATTGAAGTTGAAACACCAAAGAGTCCATCAAGAAAAAG
ATCCCGGTCAAGATCTGCCAGTCCTGGAAGGAGGCGGTCTCGTTCAAGAT
CACCGTCAAGGAGAAAACCAGCATCACCAAAAGAAACTGGGTCTCCTGTT
GCAAGACAGTCAAGGTCACCTGCAAGAGGGAGGCGTACAACAGCAAAAGC
AGAAAGCCCAAAACCTAAAGTGGAAAGCCAAAAGGCTGTGAAGGTTGCTT
CAATAAGCCCAAAAAGGGTGTCCAGTGAGAAATCTGTAACTGTTCAAAAG
GAAGAATCTAAACAATTGAATGTTGAAGAAATAAACAGTAGAGAACCTAT
TACATCAAGGTTGACCAGTGCTAGAAATAATGGTGTAGAACAACAAACAA
CCACTGTTACAAGGCGCACAACACGATCAGTTACGAGAGCTCTCCAAGAA
CAACAAGAGTCAAAGGATGAAAAATCAAGCTCTTGCTCTTCCTCAGGCTC
CTGCACACTAGCTTCTGCAGCATGTTGTACATTAAAATCTTTACCATGTC
TGGTAATGTCAATCATTGGGATGATTCTACCAACTGTTCTTCTCTATGGA
TTGTATCTTTCCTGTACCAAAAGATCATGCACAATGCTGAAATTGCCAGC
TATACCATCGTGTGAGAAATTCTTCAATTGGAAATCCACAGGATATGTCT
TTGGTTggttcatttttcaaatggtCCTCTCTGCAATTCCCCTGGGAAAG
GTTGTTACGGGACCTGTCTTAGCCGATGGAAAAGCCAGACAACACTGTTT
GAATGGTTTGTTTCAGTTTGCAATTTCAATGGCCACCATTGGAGGATTGG
TATTTTATGGCAAACTCCCATTCAAATATTTGACTGTAAACTACTTGAGT
CTCATCACAGCTGCCGCTATCTACAGCTTTATTGTCAGCATCGTGGTTTA
TTTTGCGTCAAGAAATGCAAGCCCCAAAGAACCTTCAAATGGATTTTTCA
GCGATTTCATGAAAGGACGTGCTGCCAGCCCACGAATTGGAAACTTTGAT
ATCAAGATGTATGCTTTCAAAACAGGAGCAGTCAGCTGGATGGCTTTGAA
CTTGATTTACAGTATGTCCATCCTTCGAAAAGACTGGAGAAGTAATTACT
CTCTTCTGGCTGTCCTTGCCACGCAAGGTCTCTATGTCCTTGATAAACTT
TGCTCTGAggaaCAACAATTGCACACTGCAAGTATGAAATCATCAAAAGT
TGGATACTTCTTCTCAATAACAAACTTCCTTTTCATCCCATTCTTCTGTT
CAATGCAAGTCAGATATTTGGTGTTCCGTGGTACATCATTACCAGTCAGT
TATTGTGTCATTCCATTACTTATCACAGcaTCCGGTTTGGTGATTTTGGC
TCAATCTCGCaatcaaaagtttttctttagAACCCGAAAATATGATGCCA
TAGCAGCTGgtTGGAATTACATCATCACACGAAACGGCAAAGGGATCTTA
TGTGATGGCTGGTGGTCCCAATTAACACATCCCAATTATTTTGGTGATTT
CTTGCAAGCTATGGGTTGGGCTCTCTTATGTGGTACCAATAATTTACTTC
CATGGATGAATGTGTTGCTCCGATTACCCATGTTGATTGCACGTGCTGAA
GAAGATGACAAAGCCTGTAAACACAAGTATGGACCAGCCTGGACCGAATA
TCGTCAAAGTGCAAAAAGCAAAATCTTCCCATTGATTTATTAAAAAAGCA
ACACTAACGTTTATAATATGGAGCAAATGATTACTGAAGAAATTCTTGTT
ATGGTTATGTGTTTGAATGACACAGAAATGTTGGAAGTTGTTGAACCACA
ATCTTGTTTGCTTGACATTACTATGCAAGCACTTGAATGAACTTTCCATA
GCCatagtcttttttctttaagtttGTCTCGATTGCCCATATTATCTAAA
AACTTGAGTCGTtaaggctggtctccacttgcgcgcgctgcgatcgcact
ttttcgagtaaagcttccac

Run BLAST on NCBI

transcript from alignment at scaffold_283:4980..9676+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056818 ID=TCONS_00056818|Name=TCONS_00056818|organism=Clytia hemisphaerica|type=transcript|length=4697bp|location=Sequence derived from alignment at scaffold_283:4980..9676+ (Clytia hemisphaerica)
TTTTAGACACAGATTGAAGTTGAAACACCAAAGAGTCCATCAAGAAAAAG
ATCCCGGTCAAGATCTGCCAGTCCTGGAAGGAGGCGGTCTCGTTCAAGAT
CACCGTCAAGGAGAAAACCAGCATCACCAAAAGAAACTGGGTCTCCTGTT
GCAAGACAGTCAAGGTCACCTGCAAGAGGGAGGCGTACAACAGCAAAAGC
AGAAAGCCCAAAACCTAAAGTGGAAAGCCAAAAGGCTGTGAAGGTTGCTT
CAATAAGCCCAAAAAGGGTGTCCAGTGAGAAATCTGTAACTGTTCAAAAG
GAAGAATCTAAACAATTGAATGTTGAAGAAATAAACAGTAGAGAACCTAT
TACATCAAGGTTGACCAGTGCTAGAAATAATGGTGTAGAACAACAAACAA
CCACTGTTACAAGGCGCACAACACGATCAGTTACGAGAGCTCTCCAAGAA
CAACAAGAGTCAAAGGATGAAAAATCAAGCTCTTGCTCTTCCTCAGGCTC
CTGCACACTAGCTTCTGCAGCATGTTGTACATTAAAATCTTTACCATGTC
TGGTAATGTCAATCATTGGGATGATTCTACCAACTGTTCTTCTCTATGGA
TTGTATCTTTCCTGTACCAAAAGATCATGCACAATGCTGAAATTGCCAGC
TATACCATCGTGTGAGAAATTCTTCAATTGGAAATCCACAGGATATGTCT
TTGGTTggttcatttttcaaatggtCCTCTCTGCAATTCCCCTGGGAAAG
GTTTGTTCAGCTTTTTTATTTCACAGagatcattttctttcaaatatgtA
TCTACCTGTATCATCTGTTATACTGATAAAAAACGTTCTATTTTgggttt
tatttcattttaaattaatACACACATCAAAATTTTCCTTCTAACGTTTG
AGCAGTTTACAAACTTTTATAAATCCATGAATCTCTTCTCTTTGATTGTT
TTTAGGTTGTTACGGGACCTGTCTTAGCCGATGGAAAAGCCAGACAACAC
TGTTTGAATGGTATGTAAACTCTTTAACTTTTTActtgtcattattttta
atataggtgatatttttcttgatttatttgAACCAATTCAAAGAGCATTG
TCTGCGACGACATTTAAATTTGCTTGTGCAATTCAATATTGATTCACCAG
GActaaattttccttttcagGTTTGTTTCAGTTTGCAATTTCAATGGCCA
CCATTGGAGGATTGGTATTTTATGGCAAACTCCCATTCAAATATTTGACT
GTAAACTACTTGAGTCTCATCACAGCTGCCGCTATCTACAGCTTTATTGT
CAGCATCGTGGTTTATTTTGCGTCAAGAAATGCAAGCCCCAAAGAACCTT
CAAGTACGAAAATAATTCCCTCCAGTTGTTGCGTAAAGTTTAAGGATTCT
GAGGAAACTAACACTAAAACCTCACCTCATAATTGAGTactgtatttttt
aaatttatgacCTTGCTTTGCCAATCAAATTTACGGATTTTAATAATGTT
TTGAATGAGCTGCTCCTCGACTTCATTGATTAGTATTGCATCGCTAAAAT
GTATCTCTCGTGAAATTTTAGATGGATTTTTCAGCGATTTCATGAAAGGA
CGTGCTGCCAGCCCACGAATTGGAAACTTTGATATCAAGATGTATGCTTT
CAAAACAGGAGCAGTCAGCTGGGTAAGACAATCAAATTAGTGTTACATGT
CTATGACAGTTTATTACAGTGATCATTATTTGCAGATTTGATTAATTGCT
TTTCTTTCAAACTAGCTTGATCAGTAAACAGGTTTCAAAAATTAGATAGA
CCTGGATAGACATAGTCAAGACCTGTAATGAAGTATTTTACCTAGTCTTA
CCAATTAGTTTACTTCAAAACTTTAACACACTCACACGCGCGTACAAGTC
CATTCTAATCTAATTTTGCATTGCAACAGCAGCTGTTTCAGAgacctttt
tctgaaaattttgtgtGAATTATGAATAGCTGAAGAGAGAAGAATGACTA
aatggattttgaaaaattgcttaAGGTGAGTTAAGTTCCCGTTGAAATTT
TATAAGTTTAATGATTTCtaagttttatattttgatcttgtattatcatt
ttcatattttcttacTTTCTAGATGGCTTTGAACTTGATTTACAGTATGT
CCATCCTTCGAAAAGACTGGAGAAGTAATTACTCTCTTCTGGCTGTCCTT
GCCACGCAAGGTCTCTATGTCCTTGATAAACTTTGCTCTGAggtatttga
tttgatttagaTTATAATGttcattgaaaaaattatgtattTAATGGCTG
CCCAAACTAAGTTTGTCTAGAGCTTGATGAATATTTTGTAGAATAAGGAA
GTAAATACACCTGTCAGTCTTTTATAAATTTAGCTATGAATAGGGTCTGG
ACAATTGGTTGGGgtcgtccacatagtacgtacacacTAAGGGGGTGGGG
GGTCCTTTCAAAAGCGTATGTTTGCGTACAGGAGGAGGGTTACttgattt
tcaacattttagtgcgtacgtactatgtggacggcccagTTTCTCATTTT
GCTgtactatttttcattttaggaaCAACAATTGCACACTGCAAGTATGA
AATCATCAAAAGTTGGATACTTCTTCTCAATAACAAACTTCCTTTTCATC
CCATTCTTCTGTTCAATGCAAGTCAGATATTTGGTGTTCCGTGGTACATC
ATTACCAGTCAGTTATTGTGTCATTCCATTACTTATCACAGGTTTGTTGA
TTGTGTCTGTACATACAAGTTTATTTGCACAACGTGTTGTGTAAATGCAA
TgtaattgattttgaaattgtgGCCTGGTTTACTCTGCAGTTTTATCAAG
GCCGCTTGAAAAATAACAATACGCATTGATATATATCGAAATTATATCTA
cattttaaattatttgaacTTGGCATTGACCCATCCTAAGGAATTAGAAG
AATTTAaggtcttttttttaattttcttctgAAATAGTTTTTAAACTTGA
CCTTGATAACTGTTCTCTGGTGACCAAAACATTCTCATTTGTTGCATCCC
TTGCTTACTTTACCACTCAATTCAATGCACGGTTTAAAGAATTTGgtctc
aatttctttttcagcaTCCGGTTTGGTGATTTTGGCTCAATCTCGCaatc
aaaagtttttctttagAACCCGAAAATATGATGCCATAGCAGCTGGTGAG
TATAACCAGATTTCTTTCTTCATGTCTAAATTACAAGCTTGCGTGAATAG
CTTCTTTGATTAGTTGTTGCATCCCTTTCATTTGCCAAACAGTGACATcg
attgggctgttccattaaatttccatacagggggggggtggacgaagctt
ttcaaggcaaaaataGATTCTtaaaaatgtgtggataccccctggaaaat
ggcaaaagtttgaaaaaaaacccttggaaaaattcatttcctaccttaaa
agtgagggtggacgaattgaaatcagtcttttatctcctggaaattttag
aacaaccttttacccccttggaaaatgaaaaaaatactccTTTATACTCC
CTGGAAATTCCTCTCTGATTACCCCCTGGTAATGTTCGTCCACCACCCTG
TATGGATAGGAAATGGAATGACCCATTTTGAATCCTTAACATGGATGAAT
TACCATTCATTCATTAtcactgattttcaaaaaaatgtcaagaAATCGTT
GTTGTCATTTAAGGATTGAGTTCCattaagaaattttttattgttttatt
ttaaggtTGGAATTACATCATCACACGAAACGGCAAAGGGATCTTATGTG
ATGGCTGGTGGTCCCAATTAACACATCCCAATTATTTTGGTGATTTCTTG
CAAGCTATGGGTTGGGCTCTCTTATGTGGTAAGTATCAATGTCGTCTTTA
ATGAAAAATGTTGGCTATTTTTgcgtttgaaaatattttacatgGTGTGG
TTCTTTCGAATTTTTTGCGTCTTTGAAATTGCCTACTTCATTTCTTTGTT
TATATTAGAATATACGTAACTACGTAACTCAATCACCAGTTGTTGGTATA
ATCTCATGATGAAATATTTCTCTCAGCTCAAACTGTTCAcgtgttaaaag
tttttaaatgcAGTTTGTTTTGGGACAATTTTACgcaattttaattattt
tattcatatcgaaaaaaaagaaaaaagaaaaatgtttattttatcTTCGT
GAGATCGTCACCCTCCACTTTCTATCTAGAACTAATTCGAACTCCTTTAT
CTCCTCTAGGTACCAATAATTTACTTCCATGGATGAATGTGTTGCTCCGA
TTACCCATGTTGATTGCACGTGCTGAAGAAGATGACAAAGCCTGTAAACA
CAAGTATGGACCAGCCTGGACCGAATATCGTCAAAGTGCAAAAAGCAAAA
TCTTCCCATTGATTTATTAAAAAAGCAACACTAACGTTTATAATATGGAG
CAAATGATTACTGAAGAAATTCTTGTTATGGTTATGTGTTTGAATGACAC
AGAAATGTTGGAAGTTGTTGAACCACAATCTTGTTTGCTTGACATTACTA
TGCAAGCACTTGAATGAACTTTCCATAGCCatagtcttttttctttaagt
ttGTCTCGATTGCCCATATTATCTAAAAACTTGAGTCGTtaaggctggtc
tccacttgcgcgcgctgcgatcgcactttttcgagtaaagcttccac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035795	XLOC_035795	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_283	supercontig	scaffold_283:4980..9676 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7055	10.327	3.99953	2.87684	602.051	464.669	109.601	110.272	56.5344	79.9749	39.5122	35.3992	24.9172	20.7511	19.3381	30.2276	25.0495	23.5164	5.06311	7.8404	10.3334	11.9911	9.70377	9.84615	192.445	103.956	3.42552	1.50192	3.76828	4.49318

Blast

[Close]

BLAST of TCONS_00056818 vs. Swiss-Prot (Human)
Match: LBR (Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 2.416e-62
Identity = 123/385 (31.95%), Postives = 200/385 (51.95%), Query Frame = 1

Query:  613 CTKRSCTMLKLPA-IPSCEKFFNWKSTGYVFGWFIFQMVLSAIPLGKVVTGPVLADGKARQHCLNGLFQFAISMATIGGLVFYGKLPFKYLTVNYLSLITAAAIYSFIVSIVVYFASRNA-----SPKEPSNGFFSDFMKGRAASPRIGNFDIKMY-AFKTGAVSWMALNLIYSMSILRKDWRSNYSLLAVLAT--QGLYVLDKLCSEEQQLHTASMKSSKVGYFFSITNFLFIPFFCSMQVRYLVFRGTSLPVSYCVIPLLITASGLVILAQSRNQKFFFRTRKYDAIAAGWNYIITRNGKGILCDGWWSQLTHPNYFGDFLQAMGWALLCGTNNLLPWMNVLLRLPMLIARAEEDDKACKHKYGPAWTEYRQSAKSKIFPLIY 1740
            C ++  ++L  P  +P+  + +  +  G    WF+ Q++   +P+GKVV G  L DG+  ++ LNG + F ++ A IG  +F G + F Y+  ++L    AA ++  ++S+ +Y  S  A     SP    N  + DF  GR  +PRIG FD+K +   + G + W+ +NL+  ++ ++   R+  SL  +L    Q LYV+D L +EE  L T  +     G+  +  + +++PF  S Q  YLV     +      + +++   G VI   + +QK  FR    D   A    I T  GK +L  GWW  + HPNY GD + A+ W+L CG N++LP+  ++    +L+ R   D+  CK KYG AW +Y Q    +IFP IY
Sbjct:  233 CKQKDPSLLNFPPPLPALYELWETRVFGVYLLWFLIQVLFYLLPIGKVVEGTPLIDGRRLKYRLNGFYAFILTSAVIGTSLFQG-VEFHYVYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPASSGNAVY-DFFIGRELNPRIGTFDLKYFCELRPGLIGWVVINLVMLLAEMKIQDRAVPSLAMILVNSFQLLYVVDALWNEEALLTTMDIIHDGFGFMLAFGDLVWVPFIYSFQAFYLVSHPNEVSWPMASLIIVLKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYIY 615

The following BLAST results are available for this feature:

BLAST of TCONS_00056818 vs. Swiss-Prot (Human)

BLAST of TCONS_00056818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LBR	2.416e-62	31.95	Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2	[more]

You are here

TCONS_00056818 (transcript) - C. hemisphaerica