TCONS_00056812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056812
Unique NameTCONS_00056812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056812 ID=TCONS_00056812|Name=TCONS_00056812|organism=Clytia hemisphaerica|type=transcript|length=484bp
CAAGAATGATCCTTAATTTTGGCTTAAATGGTGATAGCAAGAAGAGGTTG
TCTAAGAACTAATTAAGAACAGCCGAACTTCAAAGAAAACTTTATTTGTT
CTTATGAAGGAAGAGTATGAGAGCCAAATGGAACCGCCTGAGAACTATAA
GTATAAGACTTTGGCGGCTATGTTGTATGATTATTTGCATCATTAAAATT
TGTACACAAAtacctgtttatttttttgttgaataaaagtcaacaaaaat
acgtctgtttttctttctgaaaggtattggtttgtttacattgcAGCTCT
GATTGAGAAATCTCTCTCTTTCACCACGCCTTTCCTTTTGTGGCACGGCT
TTGACTGCACATTTTAATTAAAGTTTTGGGACTCCCCCCTCTCTATGTGG
ATTAACAGGCCAATCTcgcacttatttctaccatatgtgtagatatgtaa
acatccgtaaatctaccatatgtgtagatattag
Run BLAST on NCBI

transcript from alignment at scaffold_282:419377..419860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056812 ID=TCONS_00056812|Name=TCONS_00056812|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at scaffold_282:419377..419860 (Clytia hemisphaerica)
ctaatatctacacatatggtagatttacggatgtttacatatctacacat
atggtagaaataagtgcgAGATTGGCCTGTTAATCCACATAGAGAGGGGG
GAGTCCCAAAACTTTAATTAAAATGTGCAGTCAAAGCCGTGCCACAAAAG
GAAAGGCGTGGTGAAAGAGAGAGATTTCTCAATCAGAGCTgcaatgtaaa
caaaccaatacctttcagaaagaaaaacagacgtatttttgttgactttt
attcaacaaaaaaataaacaggtaTTTGTGTACAAATTTTAATGATGCAA
ATAATCATACAACATAGCCGCCAAAGTCTTATACTTATAGTTCTCAGGCG
GTTCCATTTGGCTCTCATACTCTTCCTTCATAAGAACAAATAAAGTTTTC
TTTGAAGTTCGGCTGTTCTTAATTAGTTCTTAGACAACCTCTTCTTGCTA
TCACCATTTAAGCCAAAATTAAGGATCATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035790XLOC_035790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056812-exon-scaffold_282-1491911889:419377..419860TCONS_00056812-exon-scaffold_282-1491911889:419377..419860Clytia hemisphaericaexon
TCONS_00056812-exon-scaffold_282-1510915933:419377..419860TCONS_00056812-exon-scaffold_282-1510915933:419377..419860Clytia hemisphaericaexon
TCONS_00056812-exon-scaffold_282-1575043694:419377..419860TCONS_00056812-exon-scaffold_282-1575043694:419377..419860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:419377..419860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0396954	0	0	0.19118	1.04386	0	0.663451	0.310557	0.108714	0.26932	0.414705	0.4296	2.65981	3.38598	2.28024	0.838325	1.16217	1.48898	0.959983	1.41689	1.25675	1.2108	0.14792	0.166722	0	0.494476	1.36723	1.68072	0.270044	0.699405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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