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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056807 ID=TCONS_00056807|Name=TCONS_00056807|organism=Clytia hemisphaerica|type=transcript|length=2088bp
caaagccttagtatgttcttagaatgttcttaaatttttgggcctcgaag
ccttatgttcttatatagtttgttcttataaaaaaaaaacgtgtacaccc
tataaataagaacaggataaatacaatttgaggctcaaagtgccaaaaaa
taagaacagccaagcctcagaaaaattttactggctcttataaaaaaggg
gtAAATCATGGAAGCAACACAAAAGCCTCCgtgacttaaaaaaaaattgt
ttatgatATAGAGAGAGGTCTTATTATATCGACTTCCGTTTGATCATTTC
CTGTCCAATCTTAATCATCAACATGATTTAATCGCACTGGCATTATAAAC
ATACTCGCCACCTTTGATGCCTGGTTATAATCAACAAATAAAAGGGTTgc
ttttgtttttgataattgtccgctttttttttaattacataAAGAAGTAG
GATTAGAGGCCCCCTATTGTTCAGAGAATCTAATTAATACCTTCTTTTTT
GACCCTGTTTTATCGTGTCTTGGTAGTATGATATAATGACTTTCTCATTT
TATAAAGTTCCCACTGCAGATGAGTGTTGTAATACCATTTTTTTTAAGGA
ACCTGTAAATTAATGTTCAGGCTTGGCtgcttttattttttgacactttt
tggaCCCtcaatttgcttaaaattttcTCAGGTTTGATATTAAATTAGTT
GTACTTTTGGTCATTATTATTTGGAGAGCATTTGATCTTGGAACCTCGCG
AATGCGGAAAAATAAAGCATACTGCAGCATATAATAATGTGATAAAACCT
TTTGTGCGTCACTAAGATATATCATTCCTTGTTTATTGCTTACCCAGTAG
CCATTTCTAGCCAAATAAGGGTTCCCATAGACTCTTCGCGATTCTGTTGT
GATTATCCTTTATCCTAAGTCGAATGGAACGGAAATCTATAGAAAAATAG
AGACTTAGAAGCAACTGCATCATTGCCTTTAGATTCATGATATTAAGAAA
GAAAGCTAACAATTATTGTTCGTTAAACACAATAAGCTTTTCTAATTTGA
ATAGAGATCTATTCGTTGATTAGAAAATAGGTTATTTACTCAACAGCCGT
AAttatatatttgaacaatagaaatgaATCTCTCTCTCATTATCATGGCA
AAAACAATAGTATAGTCGTTTAGTTTTTCGATAACAAAGCAAAGTAAATA
TCTCTTTCATAAGCTAAAGCATTCAGTTGTATTGAGAACGAAAGAAATTG
GCTTGTTTGCTAAGTTAGAGTTGTATATAATCGTTGGAAATGGCTGGACA
TTCGATATTTGTTAGTTGTAATTATATCGGAAGACAGTGCTGCTAGAAAT
ATGGTATTTATTACTCTGTTTTGTATGTGTTACTGAGATGTTACCTATAT
TATAATTTGAATAATGTTTTCATAAACAGNTACTGAGATGATACCTATAT
TATAATTTGACAATAATGTTTTCataaacaattttataaaaacaaaaaca
ttttttatgagtGTGACTTTGTTTACAGCTTAGGCTGTTTTGATGTACTT
TGGAATAAATGTTTACACAAATAGTAATATAACAgaattgaattttgttt
ttggaatcataaaaaaaagttttttttatttcacaggAATTGCTGTGGAT
GGCCATCTGTGATTTAGATACCTTAATGTCTATACTATTTCTAAAAGGTT
GAAATAAATTAGATATCGATAGCAATGTATAGTTTTATTTATAACACTTT
CTAAATCCCTCTGTGGTATAATAACTTTGACACAGACATAAGTTAAGTTT
GACGTAATTTATCCCCGATACATAATATGCCCTTGAATTTTGATCTGATC
TGAAAGTAGTTGCGTGTGTATACTGACTAGAATTTTCTTCCTTTGGTTTT
GTATGCCTTGTTTTATTGATGTTTATCTTGTAATTGGAGACTGCAGACTT
TGATAATACTGCATTGGTAGGGTATATAAGAAACGCGTATAACAAAGCAA
ACTTTTAGTTGGTATGTGTATAAGTTGTTGATGTGAGAAGTAAGTGATAC
GAGAAGAGAAGGAAGGAGGCTTTTTCTGTAtgtcaaag Run BLAST on NCBI transcript from alignment at scaffold_282:413606..415693 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056807 ID=TCONS_00056807|Name=TCONS_00056807|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at scaffold_282:413606..415693 (Clytia hemisphaerica)
ctttgacaTACAGAAAAAGCCTCCTTCCTTCTCTTCTCGTATCACTTACT
TCTCACATCAACAACTTATACACATACCAACTAAAAGTTTGCTTTGTTAT
ACGCGTTTCTTATATACCCTACCAATGCAGTATTATCAAAGTCTGCAGTC
TCCAATTACAAGATAAACATCAATAAAACAAGGCATACAAAACCAAAGGA
AGAAAATTCTAGTCAGTATACACACGCAACTACTTTCAGATCAGATCAAA
ATTCAAGGGCATATTATGTATCGGGGATAAATTACGTCAAACTTAACTTA
TGTCTGTGTCAAAGTTATTATACCACAGAGGGATTTAGAAAGTGTTATAA
ATAAAACTATACATTGCTATCGATATCTAATTTATTTCAACCTTTTAGAA
ATAGTATAGACATTAAGGTATCTAAATCACAGATGGCCATCCACAGCAAT
Tcctgtgaaataaaaaaaacttttttttatgattccaaaaacaaaattca
attcTGTTATATTACTATTTGTGTAAACATTTATTCCAAAGTACATCAAA
ACAGCCTAAGCTGTAAACAAAGTCACactcataaaaaatgtttttgtttt
tataaaattgtttatGAAAACATTATTGTCAAATTATAATATAGGTATCA
TCTCAGTANCTGTTTATGAAAACATTATTCAAATTATAATATAGGTAACA
TCTCAGTAACACATACAAAACAGAGTAATAAATACCATATTTCTAGCAGC
ACTGTCTTCCGATATAATTACAACTAACAAATATCGAATGTCCAGCCATT
TCCAACGATTATATACAACTCTAACTTAGCAAACAAGCCAATTTCTTTCG
TTCTCAATACAACTGAATGCTTTAGCTTATGAAAGAGATATTTACTTTGC
TTTGTTATCGAAAAACTAAACGACTATACTATTGTTTTTGCCATGATAAT
GAGAGAGAGATtcatttctattgttcaaatatataaTTACGGCTGTTGAG
TAAATAACCTATTTTCTAATCAACGAATAGATCTCTATTCAAATTAGAAA
AGCTTATTGTGTTTAACGAACAATAATTGTTAGCTTTCTTTCTTAATATC
ATGAATCTAAAGGCAATGATGCAGTTGCTTCTAAGTCTCTATTTTTCTAT
AGATTTCCGTTCCATTCGACTTAGGATAAAGGATAATCACAACAGAATCG
CGAAGAGTCTATGGGAACCCTTATTTGGCTAGAAATGGCTACTGGGTAAG
CAATAAACAAGGAATGATATATCTTAGTGACGCACAAAAGGTTTTATCAC
ATTATTATATGCTGCAGTATGCTTTATTTTTCCGCATTCGCGAGGTTCCA
AGATCAAATGCTCTCCAAATAATAATGACCAAAAGTACAACTAATTTAAT
ATCAAACCTGAgaaaattttaagcaaattgaGGGtccaaaaagtgtcaaa
aaataaaagcaGCCAAGCCTGAACATTAATTTACAGGTTCCTTAAAAAAA
ATGGTATTACAACACTCATCTGCAGTGGGAACTTTATAAAATGAGAAAGT
CATTATATCATACTACCAAGACACGATAAAACAGGGTCAAAAAAGAAGGT
ATTAATTAGATTCTCTGAACAATAGGGGGCCTCTAATCCTACTTCTTtat
gtaattaaaaaaaaagcggacaattatcaaaaacaaaagcAACCCTTTTA
TTTGTTGATTATAACCAGGCATCAAAGGTGGCGAGTATGTTTATAATGCC
AGTGCGATTAAATCATGTTGATGATTAAGATTGGACAGGAAATGATCAAA
CGGAAGTCGATATAATAAGACCTCTCTCTATatcataaacaatttttttt
taagtcacGGAGGCTTTTGTGTTGCTTCCATGATTTaccccttttttata
agagccagtaaaatttttctgaggcttggctgttcttattttttggcact
ttgagcctcaaattgtatttatcctgttcttatttatagggtgtacacgt
tttttttttataagaacaaactatataagaacataaggcttcgaggccca
aaaatttaagaacattctaagaacatactaaggctttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056807-exon-scaffold_282-1491911889:413606..415693 | TCONS_00056807-exon-scaffold_282-1491911889:413606..415693 | Clytia hemisphaerica | exon |
| TCONS_00056807-exon-scaffold_282-1510915933:413606..415693 | TCONS_00056807-exon-scaffold_282-1510915933:413606..415693 | Clytia hemisphaerica | exon |
| TCONS_00056807-exon-scaffold_282-1575043694:413606..415693 | TCONS_00056807-exon-scaffold_282-1575043694:413606..415693 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:413606..415693 . |
Blast
The following BLAST results are available for this feature:
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