TCONS_00056800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056800
Unique NameTCONS_00056800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056800 ID=TCONS_00056800|Name=TCONS_00056800|organism=Clytia hemisphaerica|type=transcript|length=493bp
agattaCAGAGAGAAAataagaaacttaaaaaaaaagacagAATAGACAC
TAGACAATGCAGAACAAAACATGGATAACAAAACAGACTACCAAACAACA
GATGATGACGAAAATCCGTGCCAAATATCCCAAAATCCTCTACTCGTCAT
TGGACACCCATTGTGGACTACAAGAAGACATGAAGAGAGAATAGATGCCA
ATCAATACAGGAACTATACAATGATTAATTGCGGTCGCGGTCTTCTCTTT
GTAAAAAATGCCCGGAAACCTTGACACTTGTTTGGAATTTCAGCGGATGG
TCGCAGGCGGTAAGAAATATCTAGTTTCTCTCCATACTACTATTTCTTGA
ATTCTTTATATAGGATGACAATGAGGCTATTAATTTGGTTAATGATGCCC
CTATTTAACTTTTGGCTAATGAGGTctacttctttcttttttttataatt
actCGGATCTTTTCACACAGGCCTTAGTTACACACACGTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_282:314390..314882

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056800 ID=TCONS_00056800|Name=TCONS_00056800|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_282:314390..314882 (Clytia hemisphaerica)
CTTTACGTGTGTGTAACTAAGGCCTGTGTGAAAAGATCCGagtaattata
aaaaaaagaaagaagtagACCTCATTAGCCAAAAGTTAAATAGGGGCATC
ATTAACCAAATTAATAGCCTCATTGTCATCCTATATAAAGAATTCAAGAA
ATAGTAGTATGGAGAGAAACTAGATATTTCTTACCGCCTGCGACCATCCG
CTGAAATTCCAAACAAGTGTCAAGGTTTCCGGGCATTTTTTACAAAGAGA
AGACCGCGACCGCAATTAATCATTGTATAGTTCCTGTATTGATTGGCATC
TATTCTCTCTTCATGTCTTCTTGTAGTCCACAATGGGTGTCCAATGACGA
GTAGAGGATTTTGGGATATTTGGCACGGATTTTCGTCATCATCTGTTGTT
TGGTAGTCTGTTTTGTTATCCATGTTTTGTTCTGCATTGTCTAGTGTCTA
TTctgtctttttttttaagtttcttatTTTCTCTCTGtaatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035780XLOC_035780Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056800-exon-scaffold_282-1491911889:314390..314882TCONS_00056800-exon-scaffold_282-1491911889:314390..314882Clytia hemisphaericaexon
TCONS_00056800-exon-scaffold_282-1510915933:314390..314882TCONS_00056800-exon-scaffold_282-1510915933:314390..314882Clytia hemisphaericaexon
TCONS_00056800-exon-scaffold_282-1575043694:314390..314882TCONS_00056800-exon-scaffold_282-1575043694:314390..314882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:314390..314882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12241	4.14182	1.83875	2.07569	0	0.399367	0.481819	0.150358	0.736883	0.521571	0.253125	0.332788	0.498489	0.0862809	0.567477	0.837361	1.68801	0.768957	0.132794	0.13896	0.241563	0.530216	3.86728	1.43241	1.20711	0.598507	0	0.731231	0.277307	1.97772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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