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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056792 ID=TCONS_00056792|Name=TCONS_00056792|organism=Clytia hemisphaerica|type=transcript|length=2263bp
CGAAATCTTGATCGTTTTTCTCGTTACTCTTTTTGTGCAAGGTAATTCAA
TTGTTctctttcaaagaattttggTATGGGTTGTGGTTATGAACACTTTC
TTATtctaacaaaatattttgacatTTCTAATCaacacaattttataaat
aataataataaacatAATATTCCGAAaaacgaaatgaaaaaaactattga
aaattttacatGAAAAATGTTAATGTTAAAATATTCTGGTGtaaattata
aaaatgttcttgtgCAAATTTGATTATTCAAACGGATGATTTCCGAGTGG
CCGGGTAGTTAAAAACAGTGTTTGTTTCCGACATAGTTCCGGTTGATTTG
ACACTTGACCGGCTTATTTTGGATCGGGTTGAGATCCGGGTAGATGCTGA
GTCATCATCGATCAACAAACGTCGGTTCATCGGCTCACGGTAAAGTGCAT
CAGCTTGTGATGACGAAATCAAAATGTGAATATGAAAATACATTTGCTTT
AAATCGTTTATGAAAGTCAGTTTATAAGCTGCCAGGAATGAGAAACAACA
GAAACTAGCAATCTGAGCTATATTTTGCGGTGATTGGTTCCAATGGGAGA
GGTCTGGGACGAGGAAGACGGATAATACGGCACCGGAAAGGAGCGCGAAT
TCGAGTAAAATGATACGAGTGATGTAGACACGTTTGCTTGAAATGACAGG
TGTGTTGCGAGTCAAGTACGCGTGTAAACAACAGTACAGGATGGTAAAGA
TTAAACAACCAGCAGATGCTACGATGTTAACGATCACAAGCTTGCCTTCG
AAAGGGATGTTTGCTAATATGAATTGTGATAGAGCGCCGAGTATGCCAAA
AATGTACGATAAGCGATTCACCGTACCGTCGAATATTGATGTTATTTGCT
TATACTTTAGTGAACTGATTAGAAAGGATATAAAAGCGCTAATTGAAATC
CCGATGGAGAATACAATACGTTCTGGATCAGTCCGTGACAATTCATTTGG
GAATAAAAGTCTCGATGGTTCAGCTTTTCGTGTGTTGAAATAACAAACTA
TAAGCGTAGTAATCAAGGCAAAAGCATCAAAGATGGGCAGGCTTACGAAA
AGTACTTGATAGAAACTTGTGGTGGAGTTTTGTGACGGCGGATTTCGTGA
TTTGGAACACGACCTCATCATTTGACGGTTCCGAATCTCCTCTTGTTTTG
ACACACTGTATCGTTTTGATCCTGGCATCGTTGCTTTCCGATACTACTTT
TCTTTTACTTCTCTTGTTTTTTGCTGTTGTTCTGTCTACTTCaggtaaaa
cttttttaatgaaTTCGTCGCTTCTGTTAAATTTGAAACTTCCAATACTC
AACAAATTTTTGCCAGCTGTCTTGTGAACCAACCACTGTTCCGTAACAAG
TGATCTCTCAAAatgttttcacaattttttNTCGAATCTCCTCTTGTTTT
GAAACACTGTATCGTTTTGATCCGGGCATCGTTGCTTTCCGATACTTTTC
TTTTAATTCTCTTGCTCTTTTTGTTGTTCTGTCTACTTCAGGTTAAACTC
TTTTAATGAATTCGTCGCTTCTGTtaaatttgaaactttcaatACTCAAC
AAAATATTGCCAGCTGTCTTGTGAACCAACCACTCTTCCGTAACAAGTGA
TCTCTCAAAatgttttcacaattttttgttcaaatttctatttctataca
CAACTTATCACATACATCAGTACTTAGTGGTTTAAAGCTTACGTCTCATA
AAACCACGGCTTTTttcacaacaacaaaaacagtCGATTTCTTAAGTAAG
GTTCGTGATGTAGCGATTTTGATGACGCTCTTGGTTTTATATTTTGTGAG
AGTAAAACCCTACCCTTTGTTATTCAATCAATTAGGTTTATACTACTTTT
CAAAGTCTTCAAGTTGATTGCTGCTTATCAGTTTTAGTACAGCTTTCACA
ATCTTCTTGAGGTTATGATTTTGTCCAGTGTAAAACCTTCTCCACTGaag
ttttgtttgttatttCTGAAGATTAACACTTGATGGGGTATTGCCAGTGA
CCTCTAGGTGACTTCACTGTGGAGCTTTCAACAAGCTTCTTGATGATGAT
TTAAGTATTTTTCACTGGAATGATAAAGATAGAAAGTAAAGTTTCATTTA
ATGTTTAAAAGTAATACCTTGAGATTAACCTTTTGAGTGTTTCCTACCAT
GTTCCTACCTAAGATTCTGACAATATTCTGAAGAATGTCGGGTACTCACT
GAAACCTCTTTTA Run BLAST on NCBI protein sequence of TCONS_00056792-protein >TCONS_00056792-protein ID=TCONS_00056792-protein|Name=TCONS_00056792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MPGSKRYSVSKQEEIRNRQMMRSCSKSRNPPSQNSTTSFYQVLFVSLPIF
DAFALITTLIVCYFNTRKAEPSRLLFPNELSRTDPERIVFSIGISISAFI
SFLISSLKYKQITSIFDGTVNRLSYIFGILGALSQFILANIPFEGKLVIV
NIVASAGCLIFTILYCCLHAYLTRNTPVISSKRVYITRIILLEFALLSGA
VLSVFLVPDLSHWNQSPQNIAQIASFCCFSFLAAYKLTFINDLKQMYFHI
HILISSSQADALYREPMNRRLLIDDDSASTRISTRSKISRSSVKSTGTMS
ETNTVFNYPATRKSSV Run BLAST on NCBI transcript from alignment at scaffold_282:163138..165400 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056792 ID=TCONS_00056792|Name=TCONS_00056792|organism=Clytia hemisphaerica|type=transcript|length=2263bp|location=Sequence derived from alignment at scaffold_282:163138..165400 (Clytia hemisphaerica)
TAAAAGAGGTTTCAGTGAGTACCCGACATTCTTCAGAATATTGTCAGAAT
CTTAGGTAGGAACATGGTAGGAAACACTCAAAAGGTTAATCTCAAGGTAT
TACTTTTAAACATTAAATGAAACTTTACTTTCTATCTTTATCATTCCAGT
GAAAAATACTTAAATCATCATCAAGAAGCTTGTTGAAAGCTCCACAGTGA
AGTCACCTAGAGGTCACTGGCAATACCCCATCAAGTGTTAATCTTCAGaa
ataacaaacaaaacttCAGTGGAGAAGGTTTTACACTGGACAAAATCATA
ACCTCAAGAAGATTGTGAAAGCTGTACTAAAACTGATAAGCAGCAATCAA
CTTGAAGACTTTGAAAAGTAGTATAAACCTAATTGATTGAATAACAAAGG
GTAGGGTTTTACTCTCACAAAATATAAAACCAAGAGCGTCATCAAAATCG
CTACATCACGAACCTTACTTAAGAAATCGactgtttttgttgttgtgaaA
AAAGCCGTGGTTTTATGAGACGTAAGCTTTAAACCACTAAGTACTGATGT
ATGTGATAAGTTGtgtatagaaatagaaatttgaacaaaaaattgtgaaa
acatTTTGAGAGATCACTTGTTACGGAAGAGTGGTTGGTTCACAAGACAG
CTGGCAATATTTTGTTGAGTattgaaagtttcaaatttaACAGAAGCGAC
GAATTCATTAAAAGAGTTTAACCTGAAGTAGACAGAACAACAAAAAGAGC
AAGAGAATTAAAAGAAAAGTATCGGAAAGCAACGATGCCCGGATCAAAAC
GATACAGTGTTTCAAAACAAGAGGAGATTCGANaaaaaattgtgaaaaca
tTTTGAGAGATCACTTGTTACGGAACAGTGGTTGGTTCACAAGACAGCTG
GCAAAAATTTGTTGAGTATTGGAAGTTTCAAATTTAACAGAAGCGACGAA
ttcattaaaaaagttttacctGAAGTAGACAGAACAACAGCAAAAAACAA
GAGAAGTAAAAGAAAAGTAGTATCGGAAAGCAACGATGCCAGGATCAAAA
CGATACAGTGTGTCAAAACAAGAGGAGATTCGGAACCGTCAAATGATGAG
GTCGTGTTCCAAATCACGAAATCCGCCGTCACAAAACTCCACCACAAGTT
TCTATCAAGTACTTTTCGTAAGCCTGCCCATCTTTGATGCTTTTGCCTTG
ATTACTACGCTTATAGTTTGTTATTTCAACACACGAAAAGCTGAACCATC
GAGACTTTTATTCCCAAATGAATTGTCACGGACTGATCCAGAACGTATTG
TATTCTCCATCGGGATTTCAATTAGCGCTTTTATATCCTTTCTAATCAGT
TCACTAAAGTATAAGCAAATAACATCAATATTCGACGGTACGGTGAATCG
CTTATCGTACATTTTTGGCATACTCGGCGCTCTATCACAATTCATATTAG
CAAACATCCCTTTCGAAGGCAAGCTTGTGATCGTTAACATCGTAGCATCT
GCTGGTTGTTTAATCTTTACCATCCTGTACTGTTGTTTACACGCGTACTT
GACTCGCAACACACCTGTCATTTCAAGCAAACGTGTCTACATCACTCGTA
TCATTTTACTCGAATTCGCGCTCCTTTCCGGTGCCGTATTATCCGTCTTC
CTCGTCCCAGACCTCTCCCATTGGAACCAATCACCGCAAAATATAGCTCA
GATTGCTAGTTTCTGTTGTTTCTCATTCCTGGCAGCTTATAAACTGACTT
TCATAAACGATTTAAAGCAAATGTATTTTCATATTCACATTTTGATTTCG
TCATCACAAGCTGATGCACTTTACCGTGAGCCGATGAACCGACGTTTGTT
GATCGATGATGACTCAGCATCTACCCGGATCTCAACCCGATCCAAAATAA
GCCGGTCAAGTGTCAAATCAACCGGAACTATGTCGGAAACAAACACTGTT
TTTAACTACCCGGCCACTCGGAAATCATCCGTTTGAATAATCAAATTTGc
acaagaacatttttataatttaCACCAGAATATTTTAACATTAACATTTT
TCatgtaaaattttcaatagtttttttcatttcgtttTTCGGAATATTat
gtttattattattatttataaaattgtgttGATTAGAAatgtcaaaatat
tttgttagaATAAGAAAGTGTTCATAACCACAACCCATAccaaaattctt
tgaaagagAACAATTGAATTACCTTGCACAAAAAGAGTAACGAGAAAAAC
GATCAAGATTTCG Coding sequence (CDS) from alignment at scaffold_282:163138..165400 >TCONS_00056792 ID=TCONS_00056792|Name=TCONS_00056792|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_282:163138..165400 (Clytia hemisphaerica)
ATGCCAGGATCAAAACGATACAGTGTGTCAAAACAAGAGGAGATTCGGAA
CCGTCAAATGATGAGGTCGTGTTCCAAATCACGAAATCCGCCGTCACAAA
ACTCCACCACAAGTTTCTATCAAGTACTTTTCGTAAGCCTGCCCATCTTT
GATGCTTTTGCCTTGATTACTACGCTTATAGTTTGTTATTTCAACACACG
AAAAGCTGAACCATCGAGACTTTTATTCCCAAATGAATTGTCACGGACTG
ATCCAGAACGTATTGTATTCTCCATCGGGATTTCAATTAGCGCTTTTATA
TCCTTTCTAATCAGTTCACTAAAGTATAAGCAAATAACATCAATATTCGA
CGGTACGGTGAATCGCTTATCGTACATTTTTGGCATACTCGGCGCTCTAT
CACAATTCATATTAGCAAACATCCCTTTCGAAGGCAAGCTTGTGATCGTT
AACATCGTAGCATCTGCTGGTTGTTTAATCTTTACCATCCTGTACTGTTG
TTTACACGCGTACTTGACTCGCAACACACCTGTCATTTCAAGCAAACGTG
TCTACATCACTCGTATCATTTTACTCGAATTCGCGCTCCTTTCCGGTGCC
GTATTATCCGTCTTCCTCGTCCCAGACCTCTCCCATTGGAACCAATCACC
GCAAAATATAGCTCAGATTGCTAGTTTCTGTTGTTTCTCATTCCTGGCAG
CTTATAAACTGACTTTCATAAACGATTTAAAGCAAATGTATTTTCATATT
CACATTTTGATTTCGTCATCACAAGCTGATGCACTTTACCGTGAGCCGAT
GAACCGACGTTTGTTGATCGATGATGACTCAGCATCTACCCGGATCTCAA
CCCGATCCAAAATAAGCCGGTCAAGTGTCAAATCAACCGGAACTATGTCG
GAAACAAACACTGTTTTTAACTACCCGGCCACTCGGAAATCATCCGTTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056792-exon-scaffold_282-1491911889:163138..165400 | TCONS_00056792-exon-scaffold_282-1491911889:163138..165400 | Clytia hemisphaerica | exon |
| TCONS_00056792-exon-scaffold_282-1510915933:163138..165400 | TCONS_00056792-exon-scaffold_282-1510915933:163138..165400 | Clytia hemisphaerica | exon |
| TCONS_00056792-exon-scaffold_282-1575043694:163138..165400 | TCONS_00056792-exon-scaffold_282-1575043694:163138..165400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:163138..165400 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019402 | Frag1/DRAM/Sfk1 |
Blast
The following BLAST results are available for this feature:
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