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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056772 ID=TCONS_00056772|Name=TCONS_00056772|organism=Clytia hemisphaerica|type=transcript|length=192bp
TCAGAATCGAATGTTGAAAACTTCATTCCATTGTGCTTGTTGCCAAAAGT
ATTTGGTTTTGAAACATTTCCAGAAGCTCCAGAGATTGTCAACATATATT
TGCTTGCTTCATCACCGACTtcaaaaatatcatattttgcATAAACCATT
TTTGTTTGTCCAACCATGATCATGTTAATCAAAAGTTCGGAT Run BLAST on NCBI transcript from alignment at scaffold_282:176008..180833- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056772 ID=TCONS_00056772|Name=TCONS_00056772|organism=Clytia hemisphaerica|type=transcript|length=4826bp|location=Sequence derived from alignment at scaffold_282:176008..180833- (Clytia hemisphaerica)
TCAGAATCGAATGTTGAAAACTTCATTCCATTGTGCTTGTTGCCAAAAGT
ATTTGGTTTTGAAACATTTCCAGAAGCTCCAGAGATTGTCAACATATATT
TGCTTGCTTCATCACCGACTTCAAAAATATCGTATTTTGCATAAACCATT
TTTGTTTGTCCAACCATGATCATGTTAATCAAAAGTTCGGATTTCTTTGG
TGCAACTTCTGGCTTTGTCAAGTCATGGACATTCTCATTCCCAAACCAAA
ATTCACCAGTTAACTTTCCAAAACCAAGTTTATAGTCATTCCAGTTGCGA
GTAAAGTTAACAGAGCCGTCAGTCCTTCTNCAAGTCATGGACATTCTCAT
TCCCAAACCAAAATTCACCAGTTAACTTTCCAAAACCAAGTTTATAGTCA
TTCCAGTTGCGAGTAAAGTTAACAGAGCCGTTAGTCCTTCTAAGAAACGT
TGTCCAGCCGCCGTTGTCCGTGGTCTGATCGCAATAAGTATTCAGTACAC
TGAAACGATGTCCGTGCAGTCGATAAATTCCATTGATTTTATAGCCAGCC
TGGTAAAACTCCAAGCAATCCTGTCTGGGTTGAATTTCAGTGCAGTCACA
ATATTTACTGTCTTTGACAGATTTGCAGGGAGCACATTTTCCATGAAGAC
CTCTCAAGAATGTAACTTGATTTTTCAGTGTTTGGTAATCAGCTGTCAGC
TTTTGGTTGGATTGCCTTAGAGCTTCTACACTTTGTTTGAGATTTGCCAG
AGATTGATCCAACAAATTACCAACGCTCTTGGAAGATGCACTTGAGGTTG
CACCAATACCAACCAAGTATTGGAGATAGAATGTCAAGACAAGAATCTTC
ATTATTAGTGAAGCTTTTCCCAAATCTTTTGTATAGTCTTTTTCCTCTTC
TTACTTTATTTTTAAAATCCTTTGACCATAATTTGTTGGTGCTTCTCCGT
CTTTTATGACTTTTATCGTCCTTTCGTCTTTGTCTGATCAAACTGTCTCG
TCCTCTCCACTTTTATTTGTTGAACAGAGACAAGAACTTTGTTTGACTTT
CACTTTGATCAGGTCTCTTCTTTCATTGCAGCAATTTCAAATATTGTACA
TACATTTTAATAAGCAAAAGCAAGTTGTTTTTCTAAGCACGCGTTTGGAT
AAAAACAATTTCTTTTTCCTGGAGCATCACGCAAATATTGATAGATGTGT
TGTAAGAAAATCCAATCAAATATAGTCTTTTTGCGTCAATATTATTAGAT
TCAGCTTTTGAAATATTTGGATAAAATTACCTCTTTACTTTTTATTTATT
GTCAAACAAGTCGAGGTTGCTCAACCAAAGGCCATTTCATTGGAAGTGTT
CTTCGGAGTAAAATCGTTCAGAAATCAATACCACTACTAGGTTTAAATTG
AAAAAAATGGCCAATTTTAAACTAACCTATCTAACGCTGGCCCTTTTCCG
CTGCAGACCCCAACACATTCCGTAAGGACTGGCGTAATGAAACTAATAAA
GTAGCAGAAAGCTTTCACCTATCTTCTAAATCTGTGAAATGTAACCTTCT
ATTGTAGTTGGGACTTAAAACGTTCAAAATATACTAATTGAGATCAAAAT
TGTCCAGAAAAACCGAAAGTACTAAGGTCTGCCTAAAAAGTCTATTGACA
TTTTTTTACCCTTTCTCAGCAACCATTCATGCTATGTTAGAAAGCTATAC
ACAGTTGGAAAGATATTTCCAAGGATGATAATCTAAAAGATAATATATTT
TTGAAAAATTGAAAAATGAAGAAAAAAATATTAAAATAAAGAGGAAGATT
TTTTTCTACTGGTTCAAAAATTGTGACATAGGCTATTTATAAAATTTAAA
CCTTGCTGATTCCAAATATGATACCAAATTGTTCAGATTTTTGGTATCTT
TCTTGGATAAAAAGTTACATCCCTTTGAAGTAGGACTAAAACGGCCAAAA
ATGATCAAAAACAGCAAAAGCGACCTAGTTCACAGTGCTGTAACTTTTTT
TTCTAGTATTTGATCAATTGAATCACGGTTCAGCACCTGAATTGCAATTT
CACAGTTCCAGTAAGTTGTGAGCAAGGGGTCAATGTTTGTGCGTTTTAAG
GTGTTATAGTTGCCACCGAGCGGAGCGCAGCGGAGCGTAGGTGCCCCCCC
CCCCAATAAGAAAATGCTTCCTACGGCACTGGTATCAATAATCTAATTAG
AAATATTAGTAACTTTGCAGCGAATCACTGCTCAAAATTTGAGACCAAAA
GGACTATTTTATAAAAAGTTTTTCGAGGAAAATATTTTGTAGTTTTTAAG
AGGTAAATAGCTAAAAAAAAGGCCATTTTTCACTTACTCGTGACAAACTG
AAAACTGGTTTCTACAAAACATCACCGCCAGGGAAGAAAACCATAAACAG
CGTACTTTCAACCCAATAAAGTTTCAGCCCTAAATTTTCAGATTGAGGGT
ATCGCTATGTTTTTGTAGGTTTTAAGGGGTATCCACTGTTATTGCCGACC
CAGAAAATCTCAGCGTTTTGATTGGTCGAGAGCATCGAGATATTTGCGAT
ATTTTATATTTCTCTAGTATAAAAATATGACCGCGTTGACTTTTGGGGGA
CTGGGTAAGCGGTAGACTAGTAAACTAGTCGGTTATTACTTATAACCTTA
TAATAAAACTGTCAATCAAATAATGTAAACACTAATTAAATATTCAGCGC
GCGTGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGAAGAAGCT
TCTAGTCGTTGAAATTCAGAAAAGACACGCAACCTCACCTCTTCGATTCT
TTTTATTTGGAGCTTGATTTTTTTGTATATGGGTCTGTTTTCAACGACTA
GTTTACTAGTCTACTTAAAATATACCTAATTTGCGAAAGTTTATGCTCGC
GAAAAATTTTTTTCGTCTTATTCGCGAAAGTAAATGTCGTAGATTTCGCG
ATTTTTTGACCTCGCGAAATTTTCTGCTCGCAAAAGTTTGTACGCCTAAA
GTAAATTTTTCTTTTGCTTGAAAAAAATGGCTTGTCAAAGCTGAAAGCCT
GTGTTATAAGATCAACATAATTTGAAAGATTCTCATAAATGGTGAAAATA
AGAACATGTTAAGAACATTTTTATAACGTGATGGTAACGAGGCTATCATA
GCTTTTTACAAAAATACAAAAAAAACATTGACGTCCGGTCTTTTATATAT
TCATGTTTAGGCATTTTGTTCAAAATGCGAAACAAAGGCTTTCTTTAAAT
ACTACAAAAATCGAGCTTCTCACTATGGTCAGGAACAGGAACAGTTGAAG
CTTCGTTATGCATAGTGTTCTTTCATGTTTCTCAAGTAAAAGAAGAGTTT
CTAATTATTTTGCCCTAAATAGCCCATTTTCGTCTAAATTGTTTTAAGCT
ATTTATCCCAGCACGTCTCAGTTATTAGGTCTTTAAGAGTACTTAATTTT
TTCAAGGGGAAGGGAGGGGAAAGAAATTCAACTAGACTGTTTTTTAAAGT
TTGAATTAAGGTTCATGTAAATGAAAAGTAGAATTTAAAATGTTTTGAAA
TTACAATTTTAAGATATTACAAAACAATTTACCAATCATTTCTTGTTCTT
CACTGATTCCGTTGAGATGAACAAATTGGATTCATGAAACCTATAAGAGA
ATTGTGGAAAATATCAATTTATGAATTGTACTGATCCTTATATCTACCTA
CGGAGGTCTCAAAACTTATTACCATAACGGGCTTGTATAATCGGCTACAT
TTTGAAAGAAAATAATGATTTTGATGCAATTTCCAACACCCTTTTTACAC
TCTCAATTTCCCTTTGTTTTTTTGTTCGCCCTTGATTTACAATTTTTATT
TTGACCCCTTAATTTGAAAATACCAACTACCAGCTTGTCCATTAGTACAT
GGTTTAATGGTAATGAATAAAGTCTACAGGGAGATAATCATCGTCTTCTT
GTCGGTTCACTTTCAGTTATCGATCAAGATGAAAAAAGAAAACGATTTCT
TGTACAGCTAGAAACATGTAAACATGGCTATGTAGAAAGAAAAACATATT
CATTACCTTTCATTTACCTTGATTTATAACTTTCTTCGAAACTTCATCTC
TACGAAGACGGGATCCATGTCAATTTGCTGGTCATCCCAAGTGATTTCTC
CATCTATCGTTTTGCCTTTAGTGAATTTGTATTCGCCAGTCAGGAGAGTA
TAATAACAATGCCCATACCACCAACCTTTGCCGTATGCTTTTGCACAACT
TCCATCTTCTGAAGATGAATTAGGAGTCCATCTGTCGTTATCAGCGTCCA
GAGTCGAAAACTTCTTTCCATTGTGATAATCAAATCGATTTGTGGTAACA
TTTCCAGAAGCTCCAGTGATTGTCAACACATATTTGCTTGCTTCATCACC
GACTTCAAAAATATCATATTTTGCATAAACCATTTTTGTTTGTCCAACCA
TGATCATGTTAATCAAAAGTTCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056772-exon-scaffold_282-1575043694:180739..180833 | TCONS_00056772-exon-scaffold_282-1575043694:180739..180833 | Clytia hemisphaerica | exon |
| TCONS_00056772-exon-scaffold_282-1575043694:176008..176104 | TCONS_00056772-exon-scaffold_282-1575043694:176008..176104 | Clytia hemisphaerica | exon |
| TCONS_00056772-exon-scaffold_282-1510915933:180739..180833 | TCONS_00056772-exon-scaffold_282-1510915933:180739..180833 | Clytia hemisphaerica | exon |
| TCONS_00056772-exon-scaffold_282-1510915933:176008..176104 | TCONS_00056772-exon-scaffold_282-1510915933:176008..176104 | Clytia hemisphaerica | exon |
| TCONS_00056772-exon-scaffold_282-1491911889:180739..180833 | TCONS_00056772-exon-scaffold_282-1491911889:180739..180833 | Clytia hemisphaerica | exon |
| TCONS_00056772-exon-scaffold_282-1491911889:176008..176104 | TCONS_00056772-exon-scaffold_282-1491911889:176008..176104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:176008..180833 - |
Blast
The following BLAST results are available for this feature:
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