TCONS_00056765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056765
Unique NameTCONS_00056765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056765 ID=TCONS_00056765|Name=TCONS_00056765|organism=Clytia hemisphaerica|type=transcript|length=2130bp
ggtttcttgaatttcttgagtttgtattattctgcattttaatactattg
ttgtcatttttcaattgtcttattacattaatcttcaggtaggtccattc
agcatgtagatTGTTTTATCTTATGacattcaattttgttttaaagaatA
ATCTCAAAGACAATAGGTTAATATTAGCATGTGTGGTTTTTATTTGttcc
cgttttttttttttttaactcaagaAATGAGCTagcaaaaaatatgtttc
aagGCCAAAGGAGTAATGGAAGAGGAAGGGACCAAACAAGGGGTAGAGAG
AGAAGTAGGGGAAAGGGCCGAGGTCATGTTGGTAGAGTTTCAAGCAGGCA
GCAAGGTTCAGATGTTGGTAGAGGATCAAACACTAAGGAGAGTATGAAGC
CAGCTGCTCAAAGAAGAAACAGTAAACCCTCTGTGAAAAGCAGACAGAAG
GAAAGCCATACCAAAGAAGATCATCAACAGAATCAAAGTTGTGAGTCTAA
ACAATCAAACAAGTTTCggtcaagaaaacaaaaagagtCACAGCCTGaaA
AGACTACTGGGTCAATTGCTATGAAAAAAGATTATCATAAATCTGGATCA
GTTGCTGGCCAGTCTTCAGGAAAAGCAGaTTGCATTTTGTCTAACAGTTT
TGGATGTGAAAACATCAATTGGTCAAGCAAAGAACtgatcaaattctgtg
aaaagaATTTTGTTATGTTTATCATGCGTGGAGTTCCTGGTTCAGGAAAA
AGTACATTGGCTCAAAAAGTGAAATCATTTTATGGTGGAAGAGATGCTAT
CATTTGCTCAGCCGATGATTATAGGTACAATAGAAAAGGCGAATACATAT
TTAGTGTGGATCAACTTTACAAAACACATTTACAATGCCAAAACAAAGCT
GAAACCTACTGTAGCAAACAGATTCATGTGATCATTATAGaTAACACAAA
CATACATTCAAAGGACTGCAATCCTTATTTAACCCTGGCAAAGAAATaca
attattttgttattttcttaaaaatgaaagcTCAAGGTGTTGATCATCAT
GTTCAGTATAACACACATCAAGTTCCACGTGACACTATTGCCAAAATGAT
ACTAAGTTATGGATCTAATCCGTTACCCTACTATTTCAACTGGGCTGTTC
CTAATTCTGAGGGAGTGCGCCTGAGAAATGTTACACAAAGACTAATTCAG
AGTTGTATGAAAGCAGATAGCCATTTTAGTAACTTTTTaacaaatgaaat
gaaaacttCATCACAGAATCTTTTCAAGACATTTCATTTACAAAATGCCT
CAAGTCATCATTACCATGCTACAGTTGCTTATACCAACCAGTATAATGTA
CCAACTAAAATCAGTGATAAATATACAAAGTCTGCTACAGTGAAAAATGC
TCTTGGTAGCGTCACCTTCCTTCAAATAGCTGGTGTATACATCACACCAA
AGTGTATAGCCGCTAGGTTGCTATTGACTGAAGAACAGAAGAAACTATGG
GGTAGAAATGATTCTTTAAACCGTGGTGAAATCAACCCTATCGCTTTTGA
ATCAAATAAAGTTATGGAGGGCTCTTTAGAGAAAATGCTTTGTGACTTAC
ATCTTAATAACAAACACATGAATGAGGATACAGTAACTTTTCAAGTACCT
CCTGGATGTACAGAACCTAGTCATAGTCTTGGTTGCACAGCTCACATTAC
TTTAGGGACGAGGGGTAACAACAAACCTGTGATTGCAAAAGATACCTTAT
ACCAGATTGTTCATTTAGAAGCATACACTCTaccaaaaagtgaaacattA
ACCTCAGGGAATCTTGTAATTCGTTGCTATGGGGATGATAAATGGGTTAT
CTATTTTCGACATCCGTTTATAGCGCAAGCATTGTTTTGTGGACACTatg
atttgatgaaaaatacagggtgtcccaaaaagtagttttttttaggtttt
atccattcttttttactttttttgtacaGAAAGTATGgttttaatattta
tatttggaattatttttgtAGATAGCTGAAATTGAACATTATTTGGTTTT
ATCTTTTaactaacttttttattcatttgtttgTTAGTAAAGCCCTTAAC
ATTTtaatattaataaaaacactaaaGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_282:96929..100390-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056765 ID=TCONS_00056765|Name=TCONS_00056765|organism=Clytia hemisphaerica|type=transcript|length=3462bp|location=Sequence derived from alignment at scaffold_282:96929..100390- (Clytia hemisphaerica)
GGTTTCTTGAATTTCTTGAGTTTGTATTATTCTGCATTTTAATACTATTG
TTGTCATTTTTCAATTGTCTTATTACATTAATCTTCAGGTAGGTCCATTC
AGCATGTAGATTGTTTTATCTTATGACATTCAATTTTGTTTTAAAGAATA
ATCTCAAAGACAATAGGTTAATATTAGCATGTGTGGTTTTTATTTGTTCC
CGTTTTTTTTTTTTTTAACTCAAGAAATGAGCTAGCAAAAAATATGTTTC
AAGGCCAAAGGAGTAATGGAAGAGGAAGGGACCAAACAAGGGGTAGAGAG
AGAAGTAGGGGAAAGGGCCGAGGTCATGTTGGTAGAGTTTCAAGCAGGCA
GCAAGGTTCAGATGTTGGTAGAGGATCAAACACTAAGGAGAGTATGAAGC
CAGCTGCTCAAAGAAGAAACAGTAAACCCTCTGTGAAAAGCAGACAGAAG
GAAAGCCATACCAAAGAAGATCATCAACAGAATCAAAGTTGTGAGTCTAA
ACAATCAAACAAGTTTCGGTCAAGAAAACAAAAAGAGTCACAGCCTGGTA
AGGCCTGTAAATTCGTATAATTTAACATAATAAGGACGCCTTTGTTTTTT
TAATGGTCCTGTCATAATAGTTGCATTTCCAAGATATTTTTATTTTATAC
AATAATATAATTTCCTTGATTACATTGTATTGCCTAGAGATTGAGTAAGT
TTGGAAAAAGTGTCATAATTATAAATTAAATCTCAATCTTTCAATTTTCT
TTTAGAAAAGACTACTGGGTCAATTGCTATGAAAAAAGATTATCATAAAT
CTGGATCAGTTGCTGGCCAGTCTTCAGGAAAAGCAGGTTATTTATGTTTA
AAATCAAATCCAAAAAAAGAGATTCTGACTTGTCATATATTTCCTTAAAA
TGAGAAATTGTTTTTGTAAATGCCTTCAAAATTTTCTTCTTTCTAGATTG
CATTTTGTCTAACAGTTTTGGATGTGAAAACATCAATTGGTCAAGCAAAG
AACTGATCAAATTCTGTGAAAAGAATTTTGTTATGTTTATCATGCGTGGA
GTTCCTGGTTCAGGAAAAAGTACATTGGCTCAAAAAGTGAAATCATTTTA
TGGTGGAAGAGATGCTATCATTTGCTCAGCCGATGATTATAGGTAAGACA
CCGTAAGGTTGTATGGGATCAGGTGACTTCAATGCCTACTTTAATCTGCA
ATTATAGCATTTTTATTTCCCATTGAGCATTTGAGTTAATTTAGAATGAA
AGTAGAGAATTTATAAAACTCAGTATCAAACTACAAAACTAAAAATTTGT
AAGATGTGGGAAAATATTTTTGAAAATAAAATTGAAATTAAATAATTTAG
TCTTAGAACACGATTGCCGTTGAAAAAAGAAATGTTTTATACCAAAGTCA
AGGTTATATCCAGTCTTTTGGAAACGTTTTAGGCGCTGTTCACTGTTTCT
TGTTGATGTGTCACTGCACAATGTTGAACTTATTTTTATATTAAGGAGTT
GAGAATATAGGTTTCGCACTTTCCTTTTACAGGTACAATAGAAAAGGCGA
ATACATATTTAGTGTGGATCAACTTTACAAAACACATTTACAATGCCAAA
ACAAAGCTGAAACCTACTGTAGCAAACAGATTCATGTGATCATTATAGGT
AAGTTATTAATAGTGGCTGCAAAGTTTGGTACTATATATTGACGATGTGA
CTTGTTGATATACTTGATCTTTTCAGTTACCGATATTTTGAAAAGCAATA
GCAAGTGTAAGTAACTGAAAATTAGTTGTCTTTGCTTTTTCACTTGTTAC
TCTTTATTAATTTATGATTATATACCTTATTGGAACTAATTTTCGCGGGA
ACTAATTTTTGCGGTCAAAAAAAAATATCCGGAAAATTGCATTTCGCGGG
TTTTAATTTTCGTGGTTTTTTCCATTCTGGAATTTTCGCGGGTTTTAGTT
TTCGCGGTTTTGCCCTTTTTTGGACAAATTTCTTTCATTTTCCTAGGGAT
TTTTCAAATTTTTCGATAAAATTGGAAAAAATTGTTATTCGCGGGAATTA
ATTTTCGCGGGTTTTAGTTTTCGCGGTTTTGCCCTTTTTTGGACAAATTT
CTTTCATTTTCCTAGGGATTTTTCAAATTTTTCGATAAAATTGGAAAAAA
TTGTTATTCGCGGGAATTAATTTTCGCGGTTTTCAGCTCTCAAAATTTTT
CGCTAAAATTAAAACCCGCGAAAATTAGTTCCAATAAGGTATCAAAATGC
GTCTCTCATTCTTCTTTTTCAGATAACACAAACATACATTCAAAGGACTG
CAATCCTTATTTAACCCTGGCAAAGAAATACAATTATTTTGTTATTTTCT
TAAAAATGAAAGCTCAAGGTGTTGATCATCATGTTCAGTATAACACACAT
CAAGTTCCACGTGACACTATTGCCAAAATGATACTAAGTTATGGATCTAA
TCCGTTACCCTACTATTTCAACTGGGCTGTTCCTAATTCTGAGGGAGTGC
GCCTGAGAAATGTTACACAAAGACTAATTCAGAGTTGTATGAAAGCAGAT
AGCCATTTTAGTAACTTTTTAACAAATGAAATGAAAACTTCATCACAGAA
TCTTTTCAAGACATTTCATTTACAAAATGCCTCAAGTCATCATTACCATG
CTACAGTTGCTTATACCAACCAGTATAATGTACCAACTAAAATCAGTGAT
AAATATACAAAGTCTGCTACAGTGAAAAATGCTCTTGGTAGCGTCACCTT
CCTTCAAATAGCTGGTGTATACATCACACCAAAGTGTATAGCCGCTAGGT
TGCTATTGACTGAAGAACAGAAGAAACTATGGGGTAGAAATGATTCTTTA
AACCGTGGTGAAATCAACCCTATCGCTTTTGAATCAAATAAAGTTATGGA
GGGCTCTTTAGAGAAAATGCTTTGTGACTTACATCTTAATAACAAACACA
TGAATGAGGATACAGTAACTTTTCAAGTACCTCCTGGATGTACAGAACCT
AGTCATAGTCTTGGTTGCACAGCTCACATTACTTTAGGGACGAGGGGTAA
CAACAAACCTGTGATTGCAAAAGATACCTTATACCAGATTGTTCATTTAG
AAGCATACACTCTACCAAAAAGTGAAACATTAACCTCAGGGAATCTTGTA
ATTCGTTGCTATGGGGATGATAAATGGGTTATCTATTTTCGACATCCGTT
TATAGCGCAAGCATTGTTTTGTGGACACTATGATTTGATGAAAAATACAG
GGTGTCCCAAAAAGTAGTTTTTTTTAGGTTTTATCCATTCTTTTTTACTT
TTTTTGTACAGAAAGTATGGTTTTAATATTTATATTTGGAATTATTTTTG
TAGATAGCTGAAATTGAACATTATTTGGTTTTATCTTTTAACTAACTTTT
TTATTCATTTGTTTGTTAGTAAAGCCCTTAACATTTTAATATTAATAAAA
ACACTAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035756XLOC_035756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056765-exon-scaffold_282-1575043694:99844..100390TCONS_00056765-exon-scaffold_282-1575043694:99844..100390Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1575043694:99555..99635TCONS_00056765-exon-scaffold_282-1575043694:99555..99635Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1575043694:99249..99444TCONS_00056765-exon-scaffold_282-1575043694:99249..99444Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1575043694:98743..98858TCONS_00056765-exon-scaffold_282-1575043694:98743..98858Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1575043694:96929..98118TCONS_00056765-exon-scaffold_282-1575043694:96929..98118Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1510915933:99844..100390TCONS_00056765-exon-scaffold_282-1510915933:99844..100390Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1510915933:99555..99635TCONS_00056765-exon-scaffold_282-1510915933:99555..99635Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1510915933:99249..99444TCONS_00056765-exon-scaffold_282-1510915933:99249..99444Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1510915933:98743..98858TCONS_00056765-exon-scaffold_282-1510915933:98743..98858Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1510915933:96929..98118TCONS_00056765-exon-scaffold_282-1510915933:96929..98118Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1491911889:99844..100390TCONS_00056765-exon-scaffold_282-1491911889:99844..100390Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1491911889:99555..99635TCONS_00056765-exon-scaffold_282-1491911889:99555..99635Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1491911889:99249..99444TCONS_00056765-exon-scaffold_282-1491911889:99249..99444Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1491911889:98743..98858TCONS_00056765-exon-scaffold_282-1491911889:98743..98858Clytia hemisphaericaexon
TCONS_00056765-exon-scaffold_282-1491911889:96929..98118TCONS_00056765-exon-scaffold_282-1491911889:96929..98118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:96929..100390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01096	0.307521	0.571709	0.455545	0.316171	0.209277	0.156919	0.825765	0.442952	1.33719	0.734847	0.702773	0.396701	0.899801	0.701976	0.415457	0.300726	0.39571	1.61615	0.944596	0.392621	1.52351	0.369843	1.93739	0.11545	0.146924	0.211191	0	0.123806	0.0521379
Blast
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BLAST of TCONS_00056765 vs. Swiss-Prot (Human)
Match: CN37 (2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Homo sapiens GN=CNP PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.971e-19
Identity = 73/286 (25.52%), Postives = 127/286 (44.41%), Query Frame = 1 
Query:  715 MFIMRGVPGSGKSTLAQKVKSFYGGRDAI-ICSADDYRYNRKGEYIFSVDQLYKTHLQCQNKAETYCSKQ-IHVIIIDNTNIHSKDCNPYLTLAKKYNYFVIFLKMK-AQGVD--HHVQYNTHQVPRDTIAKMILSYGSNPLPYYFNWAVPNSEGVRLRNVTQRLIQSCMKADS---HFSNFLTNEMKTSSQNLFKTFHLQNASSHHYHATVAYTNQYNVPTKISDKYTKSATVKNALGSVTFLQIAGVYITPKCIAARLLLTEEQKKLWGRN-------DSLNRG 1527
            +FI+RG+PGSGKSTLA+ +   Y  RD   + SAD Y+        FS +  YK   +       YC ++ I ++++D+TN   +       +A +Y Y V+ ++ K A  +D     + N  Q+  D + K+      + LP YF W +       LR   Q  ++      +       F+  +      +L   F  +       H T  + +    P   +++Y +   +K +      L I+ +++TPK   AR+ L+E+Q +LW  +       D+L RG
Sbjct:   52 LFILRGLPGSGKSTLARVIVDKY--RDGTKMVSADAYKITPGARGAFSEE--YK---RLDEDLAAYCRRRDIRILVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVTYFGKRPPGV--LHCTTKFCDYGKAPG--AEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARVELSEQQLQLWPSDVDKLSPTDNLPRG 326
The following BLAST results are available for this feature:
BLAST of TCONS_00056765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CN375.971e-1925.522',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Ho... [more]
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