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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056756 ID=TCONS_00056756|Name=TCONS_00056756|organism=Clytia hemisphaerica|type=transcript|length=1917bp
ctcctccataatgctcattttctaaattgctcgtctcagacaaactaatc
gtctcagtataaatagaactattTAAATACGATCAAAATATGGAAGAAAG
CAATGTACAACCGGACGATAAAAACAAATACGATGCCCAATTAACGGACA
GCGAGGATAAGATTCTAAAGAAATGGTATCAAAAACGTCGCTACAACTTA
TACGTTTATACTGTTTGTAAATGTTTATATGGTTTCGAATATTCTGCCAT
TTCAATATCCGCTTTGTACTATTTCCAGTACATCATTCGTGTAAGTAATC
CGAAATTGTATTACTCCGCAGCCATTGGAGCACTCTTCGTCTCCCCTGTT
ATCTCCTCTTCGTGGCTTGTAAGATACGTCGACCGTTCGCGTAATTTACG
TGGAGCCGCCTTATGCGTGGCTTGTTTCAATTTCGCGGGGAACGTTATCT
ACGTTTTACCCTTTGTGAGCTGGCTACCAATACTTGGTCGATTTATTTGT
GGAATTGCTGAGGGAATTGATGGCACATACCAAGGTGAATTATCTCGGAC
ATACAGCTCCAAAGAATTGTCATATCATATGAAATCAATGCAAATGTATA
CTATAATATGTCACGCCATTGCTCCTGTATCGCCAATTCTCTTCAGATGG
GTccatttcaaattatttggatTAGAATTCAACCAATATAATTTTGTGGG
TGTCTTTATGGCTGTTTGTGTTTTGGTCTATCAAGCAATGGCTTATTTTA
TGTTGAGCAACTTAACCAGAGATGAAGGATATCAACtttatctcaaaatg
gaaaatcAGGAAGATCAAAATTCAAAGGAAGCTGAATCCACCGAAAGCAA
AGAAGAGCTCATCAGCTTGAAAGAGATTTTTACCAACTTTGATATAAATT
TGATACTGGTAACTGTCGTTTTGATCCAGTTTATTTACACACAGACAGAG
CTGATAGTAGCCGTAGTTGTGGTGGAGAAGTTCGTCTGGACAATCGAATA
TTTCAGTATCTTAACCATAGGCACTATCGTCATCGCTTTGGCAATTTTGA
AGTACGTCCAGCAATTCAATGGAACTAAGGACACTTATTGTTTCCTAATT
TTCTGTAGCGTTGGCAACAGTATCACCATGACAATCATGACTTTGTTGTC
AAGTTATCCTATTCAGCAACAAGTTATGAGGTCTGTGCTAATCATGGCTG
CACTGTCCTCTAATATAGTTACTGGATACAGCGTTTTGATGTTCGCTTCA
ATCGCTTTAGCGCTCGTTGTTCCACCACATTCTAGATGCTCGATTATGGG
TGTTCGTCAAGTTACTGGAAAGATAGCGTGCTGTATAGGTTATTTTACGG
CGACTTTCATCTATGATGTGAGTTATATTGCATACCCAATTATGTCAGTT
TCGTGTTTGGTTTTAGCGATTGTGTTTTTGATAAGAagcaaaactttttt
tgttagATACTGTTCgagtgaaactttgtgatggaTGAACAGAATCAAAT
ATATTGGATGCTGATACAGTGGTGTCTCCATAACTCGTACCTCTGTTAAG
AGAATACCTCCTTAATTCAAACAAGTTtgctggtcccttcagttaacgaT
GCCTTACAAActagtctctataactcgagatTTCCGTAACACCAAAACAT
TTGCGTTTCCCGTGCGTGTTCAAGCTATGTAGACTCCAACTGTACCTTAG
AACAAACCAAAAAGTCTTCGAGGCGCTTGTCGTGGTTATTACAGATTATT
GTATAGTATAGAGTATAAAATAGGTGTAAAGATTATTTTATaatggaggg
gggggggtaaatttccaaaaaatgttatatcctccaaccccatatttaat
ttttttctggaagagcccggTACTAGCTGTTTCATGCCTTATTTAGACAA
TCAATCAccagttgaaa Run BLAST on NCBI protein sequence of TCONS_00056756-protein >TCONS_00056756-protein ID=TCONS_00056756-protein|Name=TCONS_00056756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MEESNVQPDDKNKYDAQLTDSEDKILKKWYQKRRYNLYVYTVCKCLYGFE
YSAISISALYYFQYIIRVSNPKLYYSAAIGALFVSPVISSSWLVRYVDRS
RNLRGAALCVACFNFAGNVIYVLPFVSWLPILGRFICGIAEGIDGTYQGE
LSRTYSSKELSYHMKSMQMYTIICHAIAPVSPILFRWVHFKLFGLEFNQY
NFVGVFMAVCVLVYQAMAYFMLSNLTRDEGYQLYLKMENQEDQNSKEAES
TESKEELISLKEIFTNFDINLILVTVVLIQFIYTQTELIVAVVVVEKFVW
TIEYFSILTIGTIVIALAILKYVQQFNGTKDTYCFLIFCSVGNSITMTIM
TLLSSYPIQQQVMRSVLIMAALSSNIVTGYSVLMFASIALALVVPPHSRC
SIMGVRQVTGKIACCIGYFTATFIYDVSYIAYPIMSVSCLVLAIVFLIRS
KTFFVRYCSSETL Run BLAST on NCBI transcript from alignment at scaffold_282:446109..448758+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056756 ID=TCONS_00056756|Name=TCONS_00056756|organism=Clytia hemisphaerica|type=transcript|length=2650bp|location=Sequence derived from alignment at scaffold_282:446109..448758+ (Clytia hemisphaerica)
ctcctccataatgctcattttctaaattgctcgtctcagacaaactaatc
gtctcagtataaatagaactattTAAATACGATCAAAATATGGAAGAAAG
CAATGTACAACCGGACGATAAAAACAAATACGATGCCCAATTAACGGACA
GCGAGGATAAGATTCTAAAGAAATGGTATCAAAAACGTCGCTACAACTTA
TACGTTTATACTGTTTGTAAATGTTTATATGGTTTCGAATATTCTGCCAT
TTCAATATCCGCTTTGTACTATTTCCAGTACATCATTCGTGTAAGTAATC
CGAAATTGTATTACTCCGCAGCCATTGGAGCACTCTTCGTCTCCCCTGTT
ATCTCCTCTTCGTGGCTTGTAAGATACGTCGACCGTTCGCGTAATTTACG
TGGAGCCGCCTTATGCGTGGCTTGTTTCAATTTCGCGGGGAACGTTATCT
ACGTTTTACCCTTTGTGAGCTGGCTACCAATACTTGGTCGATTTATTTGT
GGAATTGCTGAGGGAATTGATGGCACATACCAAGGTAAGATGATACAGTT
TAACTCCAAGGTCGGAACCATAACGAACTCTACAATCCTGCATCAAAGAG
CCGGTGGGAGGAAGGGGCTCCGCTGGAAAAAACTACACTACAATCCCATT
CTCAGAGATAAAAAAGATCCTACGACTTTGAAAATCTGGATTTTCGGAGT
GTGAGCTTTAGAAGTGGATATCCCAACATTATATCTGTTAACATTTCCAA
AGAAGTTACTTCCAAAAAAAGGATGTTAATGTCATTATAATAATTGGAAT
ATGCTCCATCCAGTAATACTCGTCATTTCCATAGGCaaagcgagataccc
tgcaaaacttacgagggagtgcagacgtttatgacatattcactATCTTT
TGATAAACCAAAAACAATAatgtgtcgtaaaaaccgctctcatccataaa
ttttgcagggtatctcgctacgcctatgaatTTCGTCATTGATGAACATA
CAATCTCAAACATATAGACTTCAAAAATGTATCTAAATACACAGCGTGTC
CAAAAAAGGCGGACAAATTTTGATATAGAGTGAAATCCCCATTATTTATG
CCAAATTTTATGATTTGTACACTTGACAATTCATTCTCAAAAACCTGTTT
aatcatcttgggaattgaatatctattgatcGAACAGAGAATTTTTCCAC
TTATTTAGGACACACTGTATTGTAATATAATGTTCAAATAGcaatattca
ttattttgttatCATAGGTGAATTATCTCGGACATACAGCTCCAAAGAAT
TGTCATATCATATGAAATCAATGCAAATGTATACTATAATATGTCACGCC
ATTGCTCCTGTATCGCCAATTCTCTTCAGATGGGTccatttcaaattatt
tggatTAGAATTCAACCAATATAATTTTGTGGGTGTCTTTATGGCTGTTT
GTGTTTTGGTCTATCAAGCAATGGCTTATTTTATGTTGAGCAACTTAACC
AGAGATGAAGGATATCAACtttatctcaaaatggaaaatcAGGAAGATCA
AAATTCAAAGGAAGCTGAATCCACCGAAAGCAAAGAAGAGCTCATCAGCT
TGAAAGAGATTTTTACCAACTTTGATATAAATTTGATACTGGTAACTGTC
GTTTTGATCCAGTTTATTTACACACAGACAGAGCTGATAGTAGCCGTAGT
TGTGGTGGAGAAGTTCGTCTGGACAATCGAATATTTCAGTATCTTAACCA
TAGGCACTATCGTCATCGCTTTGGCAATTTTGAAGTACGTCCAGCAATTC
AATGGAACTAAGGACACTTATTGTTTCCTAATTTTCTGTAGCGTTGGCAA
CAGTATCACCATGACAATCATGACTTTGTTGTCAAGTTATCCTATTCAGC
AACAAGTTATGAGGTCTGTGCTAATCATGGCTGCACTGTCCTCTAATATA
GTTACTGGATACAGCGTTTTGATGTTCGCTTCAATCGCTTTAGCGCTCGT
TGTTCCACCACATTCTAGATGCTCGATTATGGGTGTTCGTCAAGTTACTG
GAAAGATAGCGTGCTGTATAGGTTATTTTACGGCGACTTTCATCTATGAT
GTGAGTTATATTGCATACCCAATTATGTCAGTTTCGTGTTTGGTTTTAGC
GATTGTGTTTTTGATAAGAagcaaaactttttttgttagATACTGTTCga
gtgaaactttgtgatggaTGAACAGAATCAAATATATTGGATGCTGATAC
AGTGGTGTCTCCATAACTCGTACCTCTGTTAAGAGAATACCTCCTTAATT
CAAACAAGTTtgctggtcccttcagttaacgaTGCCTTACAAActagtct
ctataactcgagatTTCCGTAACACCAAAACATTTGCGTTTCCCGTGCGT
GTTCAAGCTATGTAGACTCCAACTGTACCTTAGAACAAACCAAAAAGTCT
TCGAGGCGCTTGTCGTGGTTATTACAGATTATTGTATAGTATAGAGTATA
AAATAGGTGTAAAGATTATTTTATaatggaggggggggggtaaatttcca
aaaaatgttatatcctccaaccccatatttaatttttttctggaagagcc
cggTACTAGCTGTTTCATGCCTTATTTAGACAATCAATCAccagttgaaa
Coding sequence (CDS) from alignment at scaffold_282:446109..448758+ >TCONS_00056756 ID=TCONS_00056756|Name=TCONS_00056756|organism=Clytia hemisphaerica|type=CDS|length=2784bp|location=Sequence derived from alignment at scaffold_282:446109..448758+ (Clytia hemisphaerica)
ATGGAAGAAAGCAATGTACAACCGGACGATAAAAACAAATACGATGCCCA
ATTAACGGACAGCGAGGATAAGATTCTAAAGAAATGGTATCAAAAACGTC
GCTACAACTTATACGTTTATACTGTTTGTAAATGTTTATATGGTTTCGAA
TATTCTGCCATTTCAATATCCGCTTTGTACTATTTCCAGTACATCATTCG
TGTAAGTAATCCGAAATTGTATTACTCCGCAGCCATTGGAGCACTCTTCG
TCTCCCCTGTTATCTCCTCTTCGTGGCTTGTAAGATACGTCGACCGTTCG
CGTAATTTACGTGGAGCCGCCTTATGCGTGGCTTGTTTCAATTTCGCGGG
GAACGTTATCTACGTTTTACCCTTTGTGAGCTGGCTACCAATACTTGGTC
GATTTATTTGTGGAATTGCTGAGGGAATTGATGGCACATACCAAGGTGAA
TTATCTCGGACATACAGCTCCAAAGAATTGTCATATCATATGAAATCAAT
GCAAATGTATACTATAATATGTCACGCCATTGCTCCTGTATCGCCAATTC
TCTTCAGATGGGTccatttcaaattatttggatTAGAATTCAACCAATAT
AATTTTGTGGGTGTCTTTATGGCTGTTTGTGTTTTGGTCTATCAAGCAAT
GGCTTATTTTATGTTGAGCAACTTAACCAGAGATGAAGGATATCAACttt
atctcaaaatggaaaatcAGGAAGATCAAAATTCAAAGGAAGCTGAATCC
ACCGAAAGCAAAGAAGAGCTCATCAGCTTGAAAGAGATTTTTACCAACTT
TGATATAAATTTGATACTGGTAACTGTCGTTTTGATCCAGTTTATTTACA
CACAGACAGAGCTGATAGTAGCCGTAGTTGTGGTGGAGAAGTTCGTCTGG
ACAATCGAATATTTCAGTATCTTAACCATAGGCACTATCGTCATCGCTTT
GGCAATTTTGAAGTACGTCCAGCAATTCAATGGAACTAAGGACACTTATT
GTTTCCTAATTTTCTGTAGCGTTGGCAACAGTATCACCATGACAATCATG
ACTTTGTTGTCAAGTTATCCTATTCAGCAACAAGTTATGAGGTCTGTGCT
AATCATGGCTGCACTGTCCTCTAATATAGTTACTGGATACAGCGTTTTGA
TGTTCGCTTCAATCGCTTTAGCGCTCGTTGTTCCACCACATTCTAGATGC
TCGATTATGGGTGTTCGTCAAGTTACTGGAAAGATAGCGTGCTGTATAGG
TTATTTTACGGCGACTTTCATCTATGATGTGAGTTATATTGCATACCCAA
TTATGTCAGTTTCGTGTTTGGTTTTAGCGATTGTGTTTTTGATAAGAagc
aaaactttttttgttagATACTGTTCgagtgaaactttgtgaATGGAAGA
AAGCAATGTACAACCGGACGATAAAAACAAATACGATGCCCAATTAACGG
ACAGCGAGGATAAGATTCTAAAGAAATGGTATCAAAAACGTCGCTACAAC
TTATACGTTTATACTGTTTGTAAATGTTTATATGGTTTCGAATATTCTGC
CATTTCAATATCCGCTTTGTACTATTTCCAGTACATCATTCGTGTAAGTA
ATCCGAAATTGTATTACTCCGCAGCCATTGGAGCACTCTTCGTCTCCCCT
GTTATCTCCTCTTCGTGGCTTGTAAGATACGTCGACCGTTCGCGTAATTT
ACGTGGAGCCGCCTTATGCGTGGCTTGTTTCAATTTCGCGGGGAACGTTA
TCTACGTTTTACCCTTTGTGAGCTGGCTACCAATACTTGGTCGATTTATT
TGTGGAATTGCTGAGGGAATTGATGGCACATACCAAGGTGAATTATCTCG
GACATACAGCTCCAAAGAATTGTCATATCATATGAAATCAATGCAAATGT
ATACTATAATATGTCACGCCATTGCTCCTGTATCGCCAATTCTCTTCAGA
TGGGTccatttcaaattatttggatTAGAATTCAACCAATATAATTTTGT
GGGTGTCTTTATGGCTGTTTGTGTTTTGGTCTATCAAGCAATGGCTTATT
TTATGTTGAGCAACTTAACCAGAGATGAAGGATATCAACtttatctcaaa
atggaaaatcAGGAAGATCAAAATTCAAAGGAAGCTGAATCCACCGAAAG
CAAAGAAGAGCTCATCAGCTTGAAAGAGATTTTTACCAACTTTGATATAA
ATTTGATACTGGTAACTGTCGTTTTGATCCAGTTTATTTACACACAGACA
GAGCTGATAGTAGCCGTAGTTGTGGTGGAGAAGTTCGTCTGGACAATCGA
ATATTTCAGTATCTTAACCATAGGCACTATCGTCATCGCTTTGGCAATTT
TGAAGTACGTCCAGCAATTCAATGGAACTAAGGACACTTATTGTTTCCTA
ATTTTCTGTAGCGTTGGCAACAGTATCACCATGACAATCATGACTTTGTT
GTCAAGTTATCCTATTCAGCAACAAGTTATGAGGTCTGTGCTAATCATGG
CTGCACTGTCCTCTAATATAGTTACTGGATACAGCGTTTTGATGTTCGCT
TCAATCGCTTTAGCGCTCGTTGTTCCACCACATTCTAGATGCTCGATTAT
GGGTGTTCGTCAAGTTACTGGAAAGATAGCGTGCTGTATAGGTTATTTTA
CGGCGACTTTCATCTATGATGTGAGTTATATTGCATACCCAATTATGTCA
GTTTCGTGTTTGGTTTTAGCGATTGTGTTTTTGATAAGAagcaaaacttt
ttttgttagATACTGTTCgagtgaaactttgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00056756-exon-scaffold_282-1491911889:446109..446642 | TCONS_00056756-exon-scaffold_282-1491911889:446109..446642 | Clytia hemisphaerica | exon |
| TCONS_00056756-exon-scaffold_282-1510915933:446109..446642 | TCONS_00056756-exon-scaffold_282-1510915933:446109..446642 | Clytia hemisphaerica | exon |
| TCONS_00056756-exon-scaffold_282-1575043694:446109..446642 | TCONS_00056756-exon-scaffold_282-1575043694:446109..446642 | Clytia hemisphaerica | exon |
| TCONS_00056756-exon-scaffold_282-1491911889:447376..448758 | TCONS_00056756-exon-scaffold_282-1491911889:447376..448758 | Clytia hemisphaerica | exon |
| TCONS_00056756-exon-scaffold_282-1510915933:447376..448758 | TCONS_00056756-exon-scaffold_282-1510915933:447376..448758 | Clytia hemisphaerica | exon |
| TCONS_00056756-exon-scaffold_282-1575043694:447376..448758 | TCONS_00056756-exon-scaffold_282-1575043694:447376..448758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:446109..448758 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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