TCONS_00056716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056716
Unique NameTCONS_00056716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056716 ID=TCONS_00056716|Name=TCONS_00056716|organism=Clytia hemisphaerica|type=transcript|length=279bp
AGATTAAGCCAATTATTGATGTTGATGAAGAAGTGGTAGTTGAAGAAGAC
ACTGAATGTTTTGAGAAAGAGGACAGTGGTAACGAAATTGACTCAGATGA
GTGAGTGAACCTATTTGAATTACTCACTTTTATAATTAGCCTGGAGATTC
AtgatatgatttcttattctatatNTGATATACcagcgaaaataattaaa
aaatactctCACTTATTTGCAAGCTGCTTCTCTATAAGCATAAATGACTC
CTTCAGCTCAGGTATTTTTCCCAACATTT
Run BLAST on NCBI

transcript from alignment at scaffold_281:389238..389516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056716 ID=TCONS_00056716|Name=TCONS_00056716|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at scaffold_281:389238..389516 (Clytia hemisphaerica)
AAATGTTGGGAAAAATACCTGAGCTGAAGGAGTCATTTATGCTTATAGAG
AAGCAGCTTGCAAATAAGTGagagtattttttaattattttcgctgGTAT
ATCANatatagaataagaaatcatatcaTGAATCTCCAGGCTAATTATAA
AAGTGAGTAATTCAAATAGGTTCACTCACTCATCTGAGTCAATTTCGTTA
CCACTGTCCTCTTTCTCAAAACATTCAGTGTCTTCTTCAACTACCACTTC
TTCATCAACATCAATAATTGGCTTAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035733XLOC_035733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056716-exon-scaffold_281-1491911889:389238..389516TCONS_00056716-exon-scaffold_281-1491911889:389238..389516Clytia hemisphaericaexon
TCONS_00056716-exon-scaffold_281-1510915933:389238..389516TCONS_00056716-exon-scaffold_281-1510915933:389238..389516Clytia hemisphaericaexon
TCONS_00056716-exon-scaffold_281-1575043694:389238..389516TCONS_00056716-exon-scaffold_281-1575043694:389238..389516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:389238..389516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.20012	2.45966	3.52765	0.67551	0.533797	0	1.80873	1.02514	1.84939	2.76211	1.90075	1.68885	0.375094	0.284435	0.610485	0	0.770846	1.59745	0.557205	2.42156	0	0	0	1.27567	0	0.686852	1.10561	0	1.1329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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