TCONS_00056704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056704
Unique NameTCONS_00056704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056704 ID=TCONS_00056704|Name=TCONS_00056704|organism=Clytia hemisphaerica|type=transcript|length=766bp
GTTTAGTGAGGTGTTTTTGTTCCTTGTAATAGTTTTGTTCTTTTCTGTTA
GGTTGTCTGTAAGTTTGATTTTGAGTGTTTTGTGTGTTTTGGAACTTTTC
CATCTCTCTTTTAATTAACGTTTTGATCAGGTCATCTTTGGGGGAGTCAT
TAGTAGTTTTTGAGAAGTTAGTAGTATCGGGTGgtgtcttgttgttgttg
tttgaatTGGAATGAGGTGGTTGGTTAGTTTCGGTTGACTGTAGAGCTTG
GTTAGATTTTGTGGTCGATTCGTTGAATTTTGAGGTTGATCGGTTGGATT
TTGTGGTCGATTCGTTGGGTTTTGTGGTTGATCGGTTGGATTTTGTGGTC
GATTCGTTGGATTTGTGGTCAATCCGTTGGTCTTGGTGGCTGCTTGGGTT
GGCTTGTCGTTGGTTTTAGGTGACGATTTCATTATGTCGGAGTGGAATGG
AAGTTGTTTCAATAAATGGCGTCTGGTTTTGTTAGGTTCGGTTATGGTGG
GCCTTGTTAAAATTGGTGATAATGCATGGAGCTCCGATTCACTCATGTCT
GTAAAGATAATTGTGAAATATAGTGATTAGTTGTTCGGTGTGTGTTGTGC
TTTTAGTATGTTTCTACATTAAGTTTGTGACAAAGGTAAAGTGTGTGATA
AAGGTAAAGTCGAATGAAAAGGTTATTCTTCATTGACACTACTTCATTTT
AACTGTAAGAATATGTGTCTCAAATGTACAAGAGGATCGTGTATAATATT
TGTTGGAAAAATGGAG
Run BLAST on NCBI

protein sequence of TCONS_00056704-protein

>TCONS_00056704-protein ID=TCONS_00056704-protein|Name=TCONS_00056704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MSESELHALSPILTRPTITEPNKTRRHLLKQLPFHSDIMKSSPKTNDKPT
QAATKTNGLTTNPTNRPQNPTDQPQNPTNRPQNPTDQPQNSTNRPQNLTK
LYSQPKLTNHLIPIQTTTTRHHPILLTSQKLLMTPPKMT
Run BLAST on NCBI

transcript from alignment at scaffold_281:135118..135883

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056704 ID=TCONS_00056704|Name=TCONS_00056704|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at scaffold_281:135118..135883 (Clytia hemisphaerica)
CTCCATTTTTCCAACAAATATTATACACGATCCTCTTGTACATTTGAGAC
ACATATTCTTACAGTTAAAATGAAGTAGTGTCAATGAAGAATAACCTTTT
CATTCGACTTTACCTTTATCACACACTTTACCTTTGTCACAAACTTAATG
TAGAAACATACTAAAAGCACAACACACACCGAACAACTAATCACTATATT
TCACAATTATCTTTACAGACATGAGTGAATCGGAGCTCCATGCATTATCA
CCAATTTTAACAAGGCCCACCATAACCGAACCTAACAAAACCAGACGCCA
TTTATTGAAACAACTTCCATTCCACTCCGACATAATGAAATCGTCACCTA
AAACCAACGACAAGCCAACCCAAGCAGCCACCAAGACCAACGGATTGACC
ACAAATCCAACGAATCGACCACAAAATCCAACCGATCAACCACAAAACCC
AACGAATCGACCACAAAATCCAACCGATCAACCTCAAAATTCAACGAATC
GACCACAAAATCTAACCAAGCTCTACAGTCAACCGAAACTAACCAACCAC
CTCATTCCAattcaaacaacaacaacaagacacCACCCGATACTACTAAC
TTCTCAAAAACTACTAATGACTCCCCCAAAGATGACCTGATCAAAACGTT
AATTAAAAGAGAGATGGAAAAGTTCCAAAACACACAAAACACTCAAAATC
AAACTTACAGACAACCTAACAGAAAAGAACAAAACTATTACAAGGAACAA
AAACACCTCACTAAAC

Coding sequence (CDS) from alignment at scaffold_281:135118..135883

>TCONS_00056704 ID=TCONS_00056704|Name=TCONS_00056704|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_281:135118..135883 (Clytia hemisphaerica)
ATGAGTGAATCGGAGCTCCATGCATTATCACCAATTTTAACAAGGCCCAC
CATAACCGAACCTAACAAAACCAGACGCCATTTATTGAAACAACTTCCAT
TCCACTCCGACATAATGAAATCGTCACCTAAAACCAACGACAAGCCAACC
CAAGCAGCCACCAAGACCAACGGATTGACCACAAATCCAACGAATCGACC
ACAAAATCCAACCGATCAACCACAAAACCCAACGAATCGACCACAAAATC
CAACCGATCAACCTCAAAATTCAACGAATCGACCACAAAATCTAACCAAG
CTCTACAGTCAACCGAAACTAACCAACCACCTCATTCCAattcaaacaac
aacaacaagacacCACCCGATACTACTAACTTCTCAAAAACTACTAATGA
CTCCCCCAAAGATGACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035721XLOC_035721Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056704-proteinTCONS_00056704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056704-exon-scaffold_281-1491911889:135118..135883TCONS_00056704-exon-scaffold_281-1491911889:135118..135883Clytia hemisphaericaexon
TCONS_00056704-exon-scaffold_281-1510915933:135118..135883TCONS_00056704-exon-scaffold_281-1510915933:135118..135883Clytia hemisphaericaexon
TCONS_00056704-exon-scaffold_281-1575043694:135118..135883TCONS_00056704-exon-scaffold_281-1575043694:135118..135883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:135118..135883 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0636943	0	0	0	0	0.271503	0.0818891	0.153327	0.053674	0.199452	0	0.0424201	0.0847222	0.219962	0	0	0	0	0	0	0	0	0	0	0.0683858	0.0610327	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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