TCONS_00056699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056699
Unique NameTCONS_00056699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056699 ID=TCONS_00056699|Name=TCONS_00056699|organism=Clytia hemisphaerica|type=transcript|length=327bp
CTCTTCCACCAGTGACGCCCATTTCTCCTTGTCCTGTGTTGTGTTACGTC
GTAATTTTTCAGTCAACCTTTTCAATACCTCTTTAATAACCTTCTGCCAT
TCATAGTTTTTGAGACAACCCACTCGCGCAAAGCCATCTTCAATTAAAGA
GTCTCTTGCCCGTTGGTAGTCTTTTGACGCAACATGTCCTTTGGTTTTTG
AAGCTGCAGCTTTAACGAGCTCTTTTGAAACGTACACAAGGCACAGAAAG
TGATGGCGAGACGGCATCGATGTCTTGCAGACATGATAATCCAGTTCCTT
GTCATAATAATCTCTTGGCAAAGATTT
Run BLAST on NCBI

protein sequence of TCONS_00056699-protein

>TCONS_00056699-protein ID=TCONS_00056699-protein|Name=TCONS_00056699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
KSLPRDYYDKELDYHVCKTSMPSRHHFLCLVYVSKELVKAAASKTKGHVA
SKDYQRARDSLIEDGFARVGCLKNYEWQKVIKEVLKRLTEKLRRNTTQDK
EKWASLVEE
Run BLAST on NCBI

transcript from alignment at scaffold_281:58919..59245

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056699 ID=TCONS_00056699|Name=TCONS_00056699|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at scaffold_281:58919..59245 (Clytia hemisphaerica)
AAATCTTTGCCAAGAGATTATTATGACAAGGAACTGGATTATCATGTCTG
CAAGACATCGATGCCGTCTCGCCATCACTTTCTGTGCCTTGTGTACGTTT
CAAAAGAGCTCGTTAAAGCTGCAGCTTCAAAAACCAAAGGACATGTTGCG
TCAAAAGACTACCAACGGGCAAGAGACTCTTTAATTGAAGATGGCTTTGC
GCGAGTGGGTTGTCTCAAAAACTATGAATGGCAGAAGGTTATTAAAGAGG
TATTGAAAAGGTTGACTGAAAAATTACGACGTAACACAACACAGGACAAG
GAGAAATGGGCGTCACTGGTGGAAGAG

Coding sequence (CDS) from alignment at scaffold_281:58919..59245

>TCONS_00056699 ID=TCONS_00056699|Name=TCONS_00056699|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_281:58919..59245 (Clytia hemisphaerica)
AAATCTTTGCCAAGAGATTATTATGACAAGGAACTGGATTATCATGTCTG
CAAGACATCGATGCCGTCTCGCCATCACTTTCTGTGCCTTGTGTACGTTT
CAAAAGAGCTCGTTAAAGCTGCAGCTTCAAAAACCAAAGGACATGTTGCG
TCAAAAGACTACCAACGGGCAAGAGACTCTTTAATTGAAGATGGCTTTGC
GCGAGTGGGTTGTCTCAAAAACTATGAATGGCAGAAGGTTATTAAAGAGG
TATTGAAAAGGTTGACTGAAAAATTACGACGTAACACAACACAGGACAAG
GAGAAATGGGCGTCACTGGTGGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035716XLOC_035716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056699-exon-scaffold_281-1491911889:58919..59245TCONS_00056699-exon-scaffold_281-1491911889:58919..59245Clytia hemisphaericaexon
TCONS_00056699-exon-scaffold_281-1510915933:58919..59245TCONS_00056699-exon-scaffold_281-1510915933:58919..59245Clytia hemisphaericaexon
TCONS_00056699-exon-scaffold_281-1575043694:58919..59245TCONS_00056699-exon-scaffold_281-1575043694:58919..59245Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056699-proteinTCONS_00056699-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:58919..59245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.253347	0.627623	0	0.600683	0.399899	2.49179	0.341432	1.09923	0	0.462656	0	0	0	0	0	0	0.968366	0.288081	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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