TCONS_00056692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056692
Unique NameTCONS_00056692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056692 ID=TCONS_00056692|Name=TCONS_00056692|organism=Clytia hemisphaerica|type=transcript|length=351bp
TTAGGGTTTGGAGTTATGACAACGAACAATTTCTATCACAGAGATTTTCT
CCTGGAatataaagCATTGATGCGACAGAGGACACACATTTTTGCCGTTA
TGTGAATGATTCGCCAAAAGATCTGGCTAATTGTGTCATGAAGAGGGAGG
TGATCGATGGCGTTGTTTACCCTGTCTTGAGGGCCAATCAAGACATTCCT
AAGGGAACTGAATTAAGataTGATTACGGTGACGACCAAGATGAAATGCC
CTGGAGAGCTAAGgaagattCGTTGAAGCCTCGTTACCAAGTCGATGGCG
ATGTCGTCCCCCCAACTCCTGTAAAAAAGGGTGGCAAAGACAGTATTTTG
A
Run BLAST on NCBI

transcript from alignment at scaffold_281:372826..375859-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056692 ID=TCONS_00056692|Name=TCONS_00056692|organism=Clytia hemisphaerica|type=transcript|length=3034bp|location=Sequence derived from alignment at scaffold_281:372826..375859- (Clytia hemisphaerica)
TTAGGGTTTGGAGTTATGACAACGAACAATTTCTATCACAGAGATTTTCT
CCTGGAATATAAAGGTCAGTAAACAATCTGTATATTTTGTGTAGTTAAGC
AAGATTCTTTCATTGTTCTTTTCTTGTGTTTTTCCCTTTGCCATAATAAC
CAAATTAATTGTTAATTAAATTTAAATTTATGGATTGTATTTCACAGGTC
CTCTGAAACAATTCAATTTATATACACTTTTAAACACCAGGGCCTGTAAC
TACTCACGTTCCAATTTCTATTTTGCTTTCAGTTTGTTTCTTCTTACAAA
TTTTCTTGAAGTATAGCTCAGCCCGAGTTTGTTTGTCAGGAAGATTCAAA
GTTTAATATTCTAAAGACTTGCTTCAGTTGTATAAAAATACCACTTTAGG
TGAAAGGATCTCAAAGGAGGAAGCTAGGTTGAGGGAGAAACAATACAAGG
AGAAAGGAATTGGTTGTTATATTTTTGATATCGAAGGCATTACCAAGAAA
TTCTGGTAAATTGTTTTCAGAAAATTTATATTATCCTGGCCTAATAGCTG
TTCCAAGCTCATAATAAACCAGCTGCGCTGGAAGGTTAGCCCAAAAGGAT
GAGATAGATTAAAAGATTAGCGAGAGTAGCAAAAAGTGTGATCACAGGAT
AAAGATGTCAACTATTCTTGGAGGTGGCTTAGGAAAAGTGGGTGAAAGAA
ATATGACATGAAAGAAGATAGAGAAACTGTTCTTTATGTTATCTTTTTTC
AGCATTGATGCGACAGAGGACACACATTTTTGCCGGTGAGTGAAACAAAC
CCACATTTTTAAGAGGTCAGAGTAAAATGAGCCATGAATGTGACTCCCTA
AGTGATTTGGAGGAAATCAAAAAGTTAGCGCTAATAGCTTATAAACAAAC
GCATGAGGCAAATAGTAACCTAGATGATATCCGACATGAGCTTTATACTC
CTATACTCTCACGGTCACANTATGGGACATAAATCTTTAACCACAAAAAT
TTTGCGTCAGCCTAACCTCTGTTCAAATTTTGCAACCTTACAAGGAGTAT
TTTAAAGCTTATTTTATTCAATTTTATTGCTGATCAAATATGATTTGTTT
AATTTCCCTTAGGGTTTGGAGTTATGACAACGAACAATTTCTATCACAGA
GATTTTCTCCTGGAATATAAAGGTCAGTAAACAATCTGTATATTTTGTGT
AGTTAAGCAAGATTCTTTCATTGTTCTTTTCTTGTGTTTTTCCCTTTGCC
ATAATAACCAAATTAATTGTTAATTAAATTTAAATTTATGGATTGTATTT
CACAGGTCCTCTGAAACAATTCAATTTATATACACTTTTAAACACCAGGG
CCTGTAACTACTCACGTTCCAATTTCTATTTTGCTTTCAGTTTGTTTCTT
CTTACAAATTTTCTTGAAGTATAGCTCAGCCCGAGTTTGTTTGTCAGGAA
GATTCAAAGTTTAATATTCTAAAGACTTGCTTCAGTTGTATAAAAATACC
ACTTTAGGTGAAAGGATCTCAAAGGAGGAAGCTAGGTTGAGGGAGAAACA
ATACAAGGAGAAAGGAATTGGTTGTTATATTTTTGATATCGAAGGCATTA
CCAAGAAATTCTGGTAAATTGTTTTCAGAAAATTTATATTATCCTGGCCT
AATAGCTGTTCCAAGCTCATAATAAACCAGCTGCGCTGGAAGGTTAGCCC
AAAAGGATGAGATAGATTAAAAGATTAGCGAGAGTAGCAAAAAGTGTGAT
CACAGGATAAAGATGTCAACTATTCTTGGAGGTGGCTTAGGAAAAGTGGG
TGAAAGAAATATGTTTCTGACATGAAAGAAGATAGAGAAACTGTTCCTTA
TGTTATCTTTTTTTAGCATTGATGCGACAGAGGACACACATTTTTGCCGG
TGAGTGAAACAAACCCACATTTTTTAAGAGGTCAGAGTAAAATGAGCCAC
GAATGTGACTCCCTAAGTGATTTGGAGGAAATCAAAAAGTTAGCGCTAAT
AGCTTATAAACAAACGAATGAGGCAAATAGTAACCTAGATGATATCCGAC
ATGAGCTTTATACTCCTATACTCTCACGGTCACAATTATTTATTCTTGAA
ATCGTAAATGTTTCGCAGCTTTTCTAAATTATGTTAACCACCATTTATTG
GAAATTCATCTTTGAAAAAGGGAAAATTTCTTTTTGTTTTGATAAATATA
CAACAAACTATGCATTGTGAGCTTACATGAGTACACAATTGCATTTGTTA
CCATAATTGCTTCTGATTTTTCTCAGTTATGTGAATGATTCGCCAAAAGA
TCTGGCTAATTGTGTCATGAAGAGGGAGGTGATCGATGGCGTTGTTTACC
CTGTCTTGAGGGCCAATCAAGACATTCCTAAGGGAACTGAATTAAGGTAC
TTAGTTACTTTTTGTATGTTATACATCTCTTAATTCTAAAATAAGTTGTA
TAGCAAAATGCAAAACAAATATTTGAAACACAAAAAGAAACCATGGGACA
CATACTTTTTTTCTTGTGTTGGTGAGATGGAACATGTTACATTGCACCAA
CGCAAAAAAGAATTTCTTTTGTCCCAAGCCTTAAGCAGAAAATTTCAATC
TGAATTGAAAACGCAAAAATCTTGTTTGAAAGTAATTTTGTTGCCGAAAA
GGATCTACTAGTAGGACTTTTTTAAATTTAGATATGATTACGGTGACGAC
CAAGATGAAATGCCCTGGAGAGCTAAGGTAAATTTTGGTTTAAACTTTCA
AACAACTTTGCAACTTTGCAATTATTAAAAAATCAAAGCATCCTTTTGAT
GTTTTAATGTTTACATTTCTTACTTATTCATCAAGATCTTTTTTTTTTCA
GGAAGATTCGTTGAAGCCTCGTTACCAAGTCGATGGCGATGTCGTCCCCC
CAACTCCTGTAAAAAAGGTATTTTATAAATGTCTAAATATTCGTAAGTCA
GATCTGATTGTAATCAACGCTTTAAAAAAATTCTTGTTGACATTGACACT
TTCCTTTTTTAGGGTGGCAAAGACAGTATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035709XLOC_035709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056692-exon-scaffold_281-1575043694:375796..375859TCONS_00056692-exon-scaffold_281-1575043694:375796..375859Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1575043694:375075..375107TCONS_00056692-exon-scaffold_281-1575043694:375075..375107Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1575043694:373464..373583TCONS_00056692-exon-scaffold_281-1575043694:373464..373583Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1575043694:373133..373178TCONS_00056692-exon-scaffold_281-1575043694:373133..373178Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1575043694:372943..373008TCONS_00056692-exon-scaffold_281-1575043694:372943..373008Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1575043694:372826..372847TCONS_00056692-exon-scaffold_281-1575043694:372826..372847Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1510915933:375796..375859TCONS_00056692-exon-scaffold_281-1510915933:375796..375859Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1510915933:375075..375107TCONS_00056692-exon-scaffold_281-1510915933:375075..375107Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1510915933:373464..373583TCONS_00056692-exon-scaffold_281-1510915933:373464..373583Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1510915933:373133..373178TCONS_00056692-exon-scaffold_281-1510915933:373133..373178Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1510915933:372943..373008TCONS_00056692-exon-scaffold_281-1510915933:372943..373008Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1510915933:372826..372847TCONS_00056692-exon-scaffold_281-1510915933:372826..372847Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1491911889:375796..375859TCONS_00056692-exon-scaffold_281-1491911889:375796..375859Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1491911889:375075..375107TCONS_00056692-exon-scaffold_281-1491911889:375075..375107Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1491911889:373464..373583TCONS_00056692-exon-scaffold_281-1491911889:373464..373583Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1491911889:373133..373178TCONS_00056692-exon-scaffold_281-1491911889:373133..373178Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1491911889:372943..373008TCONS_00056692-exon-scaffold_281-1491911889:372943..373008Clytia hemisphaericaexon
TCONS_00056692-exon-scaffold_281-1491911889:372826..372847TCONS_00056692-exon-scaffold_281-1491911889:372826..372847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:372826..375859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.000164351	0	0	0	0	0	0	0	0	9.63742e-06	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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