TCONS_00056691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056691
Unique NameTCONS_00056691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056691 ID=TCONS_00056691|Name=TCONS_00056691|organism=Clytia hemisphaerica|type=transcript|length=350bp
TAGGGTTTGGAGTTATGACAACGAACAATTTCTATCACAGAGATTTTCTC
CTGGAatataaagcATTGATGCGACAGAGGACACACATTTTTGCCGTTAT
GTGAATGATTCGCCAAAAGATCTGGCTAATTGTGTCATGAAGAGGGAGGT
GATCGATGGCGTTGTTTACCCTGTCTTGAGGGCCAATCAAGACATTCCTA
AGGGAACTGAATTAAGataTGATTACGGTGACGACCAAGATGAAATGCCC
TGGAGAGCTAAGgaagattCGTTGAAGCCTCGTTACCAAGTCGATGGCGA
TGTCGTCCCCCCAACTCCTGTAAAAAAGGGTGGCAAAGACAGTATTTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_281:372826..375858-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056691 ID=TCONS_00056691|Name=TCONS_00056691|organism=Clytia hemisphaerica|type=transcript|length=3033bp|location=Sequence derived from alignment at scaffold_281:372826..375858- (Clytia hemisphaerica)
TAGGGTTTGGAGTTATGACAACGAACAATTTCTATCACAGAGATTTTCTC
CTGGAATATAAAGGTCAGTAAACAATCTGTATATTTTGTGTAGTTAAGCA
AGATTCTTTCATTGTTCTTTTCTTGTGTTTTTCCCTTTGCCATAATAACC
AAATTAATTGTTAATTAAATTTAAATTTATGGATTGTATTTCACAGGTCC
TCTGAAACAATTCAATTTATATACACTTTTAAACACCAGGGCCTGTAACT
ACTCACGTTCCAATTTCTATTTTGCTTTCAGTTTGTTTCTTCTTACAAAT
TTTCTTGAAGTATAGCTCAGCCCGAGTTTGTTTGTCAGGAAGATTCAAAG
TTTAATATTCTAAAGACTTGCTTCAGTTGTATAAAAATACCACTTTAGGT
GAAAGGATCTCAAAGGAGGAAGCTAGGTTGAGGGAGAAACAATACAAGGA
GAAAGGAATTGGTTGTTATATTTTTGATATCGAAGGCATTACCAAGAAAT
TCTGGTAAATTGTTTTCAGAAAATTTATATTATCCTGGCCTAATAGCTGT
TCCAAGCTCATAATAAACCAGCTGCGCTGGAAGGTTAGCCCAAAAGGATG
AGATAGATTAAAAGATTAGCGAGAGTAGCAAAAAGTGTGATCACAGGATA
AAGATGTCAACTATTCTTGGAGGTGGCTTAGGAAAAGTGGGTGAAAGAAA
TATGACATGAAAGAAGATAGAGAAACTGTTCTTTATGTTATCTTTTTTCA
GCATTGATGCGACAGAGGACACACATTTTTGCCGGTGAGTGAAACAAACC
CACATTTTTAAGAGGTCAGAGTAAAATGAGCCATGAATGTGACTCCCTAA
GTGATTTGGAGGAAATCAAAAAGTTAGCGCTAATAGCTTATAAACAAACG
CATGAGGCAAATAGTAACCTAGATGATATCCGACATGAGCTTTATACTCC
TATACTCTCACGGTCACANTATGGGACATAAATCTTTAACCACAAAAATT
TTGCGTCAGCCTAACCTCTGTTCAAATTTTGCAACCTTACAAGGAGTATT
TTAAAGCTTATTTTATTCAATTTTATTGCTGATCAAATATGATTTGTTTA
ATTTCCCTTAGGGTTTGGAGTTATGACAACGAACAATTTCTATCACAGAG
ATTTTCTCCTGGAATATAAAGGTCAGTAAACAATCTGTATATTTTGTGTA
GTTAAGCAAGATTCTTTCATTGTTCTTTTCTTGTGTTTTTCCCTTTGCCA
TAATAACCAAATTAATTGTTAATTAAATTTAAATTTATGGATTGTATTTC
ACAGGTCCTCTGAAACAATTCAATTTATATACACTTTTAAACACCAGGGC
CTGTAACTACTCACGTTCCAATTTCTATTTTGCTTTCAGTTTGTTTCTTC
TTACAAATTTTCTTGAAGTATAGCTCAGCCCGAGTTTGTTTGTCAGGAAG
ATTCAAAGTTTAATATTCTAAAGACTTGCTTCAGTTGTATAAAAATACCA
CTTTAGGTGAAAGGATCTCAAAGGAGGAAGCTAGGTTGAGGGAGAAACAA
TACAAGGAGAAAGGAATTGGTTGTTATATTTTTGATATCGAAGGCATTAC
CAAGAAATTCTGGTAAATTGTTTTCAGAAAATTTATATTATCCTGGCCTA
ATAGCTGTTCCAAGCTCATAATAAACCAGCTGCGCTGGAAGGTTAGCCCA
AAAGGATGAGATAGATTAAAAGATTAGCGAGAGTAGCAAAAAGTGTGATC
ACAGGATAAAGATGTCAACTATTCTTGGAGGTGGCTTAGGAAAAGTGGGT
GAAAGAAATATGTTTCTGACATGAAAGAAGATAGAGAAACTGTTCCTTAT
GTTATCTTTTTTTAGCATTGATGCGACAGAGGACACACATTTTTGCCGGT
GAGTGAAACAAACCCACATTTTTTAAGAGGTCAGAGTAAAATGAGCCACG
AATGTGACTCCCTAAGTGATTTGGAGGAAATCAAAAAGTTAGCGCTAATA
GCTTATAAACAAACGAATGAGGCAAATAGTAACCTAGATGATATCCGACA
TGAGCTTTATACTCCTATACTCTCACGGTCACAATTATTTATTCTTGAAA
TCGTAAATGTTTCGCAGCTTTTCTAAATTATGTTAACCACCATTTATTGG
AAATTCATCTTTGAAAAAGGGAAAATTTCTTTTTGTTTTGATAAATATAC
AACAAACTATGCATTGTGAGCTTACATGAGTACACAATTGCATTTGTTAC
CATAATTGCTTCTGATTTTTCTCAGTTATGTGAATGATTCGCCAAAAGAT
CTGGCTAATTGTGTCATGAAGAGGGAGGTGATCGATGGCGTTGTTTACCC
TGTCTTGAGGGCCAATCAAGACATTCCTAAGGGAACTGAATTAAGGTACT
TAGTTACTTTTTGTATGTTATACATCTCTTAATTCTAAAATAAGTTGTAT
AGCAAAATGCAAAACAAATATTTGAAACACAAAAAGAAACCATGGGACAC
ATACTTTTTTTCTTGTGTTGGTGAGATGGAACATGTTACATTGCACCAAC
GCAAAAAAGAATTTCTTTTGTCCCAAGCCTTAAGCAGAAAATTTCAATCT
GAATTGAAAACGCAAAAATCTTGTTTGAAAGTAATTTTGTTGCCGAAAAG
GATCTACTAGTAGGACTTTTTTAAATTTAGATATGATTACGGTGACGACC
AAGATGAAATGCCCTGGAGAGCTAAGGTAAATTTTGGTTTAAACTTTCAA
ACAACTTTGCAACTTTGCAATTATTAAAAAATCAAAGCATCCTTTTGATG
TTTTAATGTTTACATTTCTTACTTATTCATCAAGATCTTTTTTTTTTCAG
GAAGATTCGTTGAAGCCTCGTTACCAAGTCGATGGCGATGTCGTCCCCCC
AACTCCTGTAAAAAAGGTATTTTATAAATGTCTAAATATTCGTAAGTCAG
ATCTGATTGTAATCAACGCTTTAAAAAAATTCTTGTTGACATTGACACTT
TCCTTTTTTAGGGTGGCAAAGACAGTATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035709XLOC_035709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056691-exon-scaffold_281-1575043694:375796..375858TCONS_00056691-exon-scaffold_281-1575043694:375796..375858Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1575043694:373961..373993TCONS_00056691-exon-scaffold_281-1575043694:373961..373993Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1575043694:373464..373583TCONS_00056691-exon-scaffold_281-1575043694:373464..373583Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1575043694:373133..373178TCONS_00056691-exon-scaffold_281-1575043694:373133..373178Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1575043694:372943..373008TCONS_00056691-exon-scaffold_281-1575043694:372943..373008Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1575043694:372826..372847TCONS_00056691-exon-scaffold_281-1575043694:372826..372847Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1510915933:375796..375858TCONS_00056691-exon-scaffold_281-1510915933:375796..375858Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1510915933:373961..373993TCONS_00056691-exon-scaffold_281-1510915933:373961..373993Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1510915933:373464..373583TCONS_00056691-exon-scaffold_281-1510915933:373464..373583Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1510915933:373133..373178TCONS_00056691-exon-scaffold_281-1510915933:373133..373178Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1510915933:372943..373008TCONS_00056691-exon-scaffold_281-1510915933:372943..373008Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1510915933:372826..372847TCONS_00056691-exon-scaffold_281-1510915933:372826..372847Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1491911889:375796..375858TCONS_00056691-exon-scaffold_281-1491911889:375796..375858Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1491911889:373961..373993TCONS_00056691-exon-scaffold_281-1491911889:373961..373993Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1491911889:373464..373583TCONS_00056691-exon-scaffold_281-1491911889:373464..373583Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1491911889:373133..373178TCONS_00056691-exon-scaffold_281-1491911889:373133..373178Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1491911889:372943..373008TCONS_00056691-exon-scaffold_281-1491911889:372943..373008Clytia hemisphaericaexon
TCONS_00056691-exon-scaffold_281-1491911889:372826..372847TCONS_00056691-exon-scaffold_281-1491911889:372826..372847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:372826..375858 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	6.14873	0	0	0	0	0	0	0	0	0.193593	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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