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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056683 ID=TCONS_00056683|Name=TCONS_00056683|organism=Clytia hemisphaerica|type=transcript|length=1199bp
CGGCTTAAAGTCTTAAAATGCAGTGACAACGCAACAGCAGCCAATAGCGA
TCTTAAGATGTAACGGCGGTGGAGTTCATCAGCGGCTTTCGCATGAAAAA
TTGCCTAATGCGCAAGAAAGGAGATTCCCTGATCGAACGCCTTCTTTCAG
CTATCTAGGACGCCATTTCTAAGAAACGAAGTTCTCGAGAAAACGTGAGC
TGGCGAAGTGACAACAACAAGAAAAAGCAAGAAAACTGAAcagaaaatgg
ctgaaaaaactgaaaaacctAAGAGGAAGTCACCGATGAGCTGGACAGCC
GATCATGAAGATATGTTGCTGCGAGAAATCCTAAAAAATCATATTAACCG
TATGTTCACAAGCTTGGAACTGTTCCTCGTGGAGAAGCATGGAAAATGAT
CGCTGAATCACTGAATGAGTTGGATCATCCCAAATTTTCTGTGACACACA
GATCAGTGAGAGAAAAATATGCATCTATGGAGAAAGACCACAAGAAAAAG
ATGGCTAGCGAAGAAAGAGCTTCAGGTATAAATCCAGAAGAGCTTACAGA
GAAAGAAAAAGCACTTATAGATTTGCAGATATAGAGTTAGCTGCAGATCA
AGATCGCCAGAACTCGAGCAAAGCTATAGAAAAGGAACGTGAAACAGCAG
CTGAGGTACGAAAACAAATGATGGAAACCTACAGTGAAACAAAGAAACGT
AATTCTAAAGAAGACGAGAGTGAAGGCTCCTCAAGTTCCAAGAAGAGAAG
AAGATCTACAGATGATACTATGGTTTATTTACGTGAAAAAATGCAAACGG
AAAAACAATATCGTGAACGAGAACTTAAAATTGCTGAGCAACGTGAAAAC
ACAATGCAGCAGCTTATTTtgcaacaacagcaacaaaatcAAGCAATGAT
GAGCTTGCTCTTTCcacaacaaaacaatttttcaaatggaaacaattttt
caaatggAAACAATTAGAccaaaatttgaactttttcacttgttgttgtt
gatatttttttattgggagcattttgttttataatagATTTTTATTGTAA
TATACGTTATGTATTGTGTTAGCCTCCAGATTCAGAGGATTTTTTTACCC
TTTTAACTCTTTGTATTATTTACCCTTGTTGTGTAAGGCATACACAGATA
CATACATGTATAACTAAGTTCAGTTAAATTCAGTTATAAAATGTCTAAA Run BLAST on NCBI protein sequence of TCONS_00056683-protein >TCONS_00056683-protein ID=TCONS_00056683-protein|Name=TCONS_00056683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MMETYSETKKRNSKEDESEGSSSSKKRRRSTDDTMVYLREKMQTEKQYRE
RELKIAEQRENTMQQLILQQQQQNQAMMSLLFPQQNNFSNGNNFSNGNN Run BLAST on NCBI transcript from alignment at scaffold_281:7152..9156- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056683 ID=TCONS_00056683|Name=TCONS_00056683|organism=Clytia hemisphaerica|type=transcript|length=2005bp|location=Sequence derived from alignment at scaffold_281:7152..9156- (Clytia hemisphaerica)
CGGCTTAAAGTCTTAAAATGCAGTGACAACGCAACAGCAGCCAATAGCGA
TCTTAAGATGTAACGGCGGTGGAGTTCATCAGCGGCTTTCGCATGAAAAA
TTGCCTAATGCGCAAGAAAGGAGATTCCCTGATCGAACGCCTTCTTTCAG
CTATCTAGGACGCCATTTCTAAGAAACGAAGTTCTCGAGAAAACGTGAGC
TGGCGAAGTGACAACAACAAGAAAAAGCAAGAAAACTGAACAGAAAATGG
CTGAAAAAACTGAAAAACCTAAGAGGAAGTAAGTAAAAAAGAAAATAAGG
AACTTAATTAAAAGTTTTCTTGCAACAAGAGGGTTTTTTCACTGTTCTTT
TAAAATTTGATGTGTGTATGTTCATTGTTGTGTTTGTTTATTTGGTTATA
AAATTAAGAAAGTTTTCTTTTAAANGTGGCAAGATTTGCATAGGACGACT
TTCATGCCTCAGGAATGCCCGAAGCCTGTTTAGATTAACCTGAGATCAGA
TTGTGAATGTTTTCAGCACACCACGCTGAAGCTCTAAAGGGATGTGTGAA
AACAAACAATCTGACGAATANATTTTATGTCATCTGCATCTCAGTTGGCG
GACTCCATTTATTGTGATTGTCTTATTATTTTGTTAATTGAAATGTATTT
TGTCAATAAAATGACAATGAATAATTTAATAATCTAAAACCCCTCTGTAA
CCTCTCTCACAGACTGTCCCCAACTGCCATTTCANNNNNNNNNNNNNNNN
NNNNNNNNNNNGTTTTTTCACTGTTCTTTTAAAATTTGATGTGTGTATGT
TCATTGTTGTGTTTGTTTATTTGGTTATAAAATTAAGAAAGTTTTCTTTT
AAACTTAGTTTTCTTTTAAACCTTTTGTGCTTTTATCCTAACTTTTTGAT
TACTTGATTGACTTTGAATCAGTATTTGAGAAATGCAAAATTGATCAGAA
TGTACTTGAAGCTATTATTAAAGCTTTTATAGCATTCTGTACTCTGTAAA
ATATTTCTATGTTTATAGTATAGATGGTTATATTTTTTTCACAAGACACA
ATTCCTAATATCTTTGAATTATTTTTTATATCAGGTCACCGATGAGCTGG
ACAGCCGATCATGAAGATATGTTGCTGCGAGAAATCCTAAAAAATCATAT
TAACCGTATGTTCACAAGCTTGGAACTGTTCCTCGTGGAGAAGCATGGAA
AATGATCGCTGAATCACTGAATGAGTTGGATCATCCCAAATTTTCTGTGA
CACACAGATCAGTGAGAGAAAAATATGCATCTATGGAGAAAGACCACAAG
AAAAAGATGGCTAGCGAAGAAAGAGCTTCAGGTATAAATCCAGAAGAGCT
TACAGAGAAAGAAAAAGCACTTATAGATTTGCAGATATAGAGTTAGCTGC
AGATCAAGATCGCCAGAACTCGAGCAAAGCTATAGAAAAGGAACGTGAAA
CAGCAGCTGAGGTACGAAAACAAATGATGGAAACCTACAGTGAAACAAAG
AAACGTAATTCTAAAGAAGACGAGAGTGAAGGCTCCTCAAGTTCCAAGAA
GAGAAGAAGATCTACAGATGATACTATGGTTTATTTACGTGAAAAAATGC
AAACGGAAAAACAATATCGTGAACGAGAACTTAAAATTGCTGAGCAACGT
GAAAACACAATGCAGCAGCTTATTTTGCAACAACAGCAACAAAATCAAGC
AATGATGAGCTTGCTCTTTCCACAACAAAACAATTTTTCAAATGGAAACA
ATTTTTCAAATGGAAACAATTAGACCAAAATTTGAACTTTTTCACTTGTT
GTTGTTGATATTTTTTTATTGGGAGCATTTTGTTTTATAATAGATTTTTA
TTGTAATATACGTTATGTATTGTGTTAGCCTCCAGATTCAGAGGATTTTT
TTACCCTTTTAACTCTTTGTATTATTTACCCTTGTTGTGTAAGGCATACA
CAGATACATACATGTATAACTAAGTTCAGTTAAATTCAGTTATAAAATGT
CTAAA Coding sequence (CDS) from alignment at scaffold_281:7152..9156- >TCONS_00056683 ID=TCONS_00056683|Name=TCONS_00056683|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_281:7152..9156- (Clytia hemisphaerica)
ATGATGGAAACCTACAGTGAAACAAAGAAACGTAATTCTAAAGAAGACGA
GAGTGAAGGCTCCTCAAGTTCCAAGAAGAGAAGAAGATCTACAGATGATA
CTATGGTTTATTTACGTGAAAAAATGCAAACGGAAAAACAATATCGTGAA
CGAGAACTTAAAATTGCTGAGCAACGTGAAAACACAATGCAGCAGCTTAT
TTTGCAACAACAGCAACAAAATCAAGCAATGATGAGCTTGCTCTTTCCAC
AACAAAACAATTTTTCAAATGGAAACAATTTTTCAAATGGAAACAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056683-exon-scaffold_281-1575043694:8879..9156 | TCONS_00056683-exon-scaffold_281-1575043694:8879..9156 | Clytia hemisphaerica | exon |
| TCONS_00056683-exon-scaffold_281-1575043694:7152..8072 | TCONS_00056683-exon-scaffold_281-1575043694:7152..8072 | Clytia hemisphaerica | exon |
| TCONS_00056683-exon-scaffold_281-1510915933:8879..9156 | TCONS_00056683-exon-scaffold_281-1510915933:8879..9156 | Clytia hemisphaerica | exon |
| TCONS_00056683-exon-scaffold_281-1510915933:7152..8072 | TCONS_00056683-exon-scaffold_281-1510915933:7152..8072 | Clytia hemisphaerica | exon |
| TCONS_00056683-exon-scaffold_281-1491911889:8879..9156 | TCONS_00056683-exon-scaffold_281-1491911889:8879..9156 | Clytia hemisphaerica | exon |
| TCONS_00056683-exon-scaffold_281-1491911889:7152..8072 | TCONS_00056683-exon-scaffold_281-1491911889:7152..8072 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:7152..9156 - |
Blast
The following BLAST results are available for this feature:
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