TCONS_00056676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056676
Unique NameTCONS_00056676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056676 ID=TCONS_00056676|Name=TCONS_00056676|organism=Clytia hemisphaerica|type=transcript|length=284bp
AGGCCCATGATAGCACAAGACCGAAGTTGTGCCGGGGTTGCAACAAGTTT
TATGACCGTCTAGATACTCATTTAAGAAGCAAACCACATAAAATCAAGGA
CGCAGGCCAGATTAAAATTGAAACCCAAGCCTGCCAACGTTACCATCAAC
TTTATCTTCATTCGAAACAAGTACGTCCAGGCGTAGTTCAATTTCAACGG
CAAAAGAACATACGTCAAGtccaaagaaaagaaagactggTTCATTGAAA
TCTTTATCGACGGTAACATCAAGTTCGCAGTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_281:49261..50016+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056676 ID=TCONS_00056676|Name=TCONS_00056676|organism=Clytia hemisphaerica|type=transcript|length=756bp|location=Sequence derived from alignment at scaffold_281:49261..50016+ (Clytia hemisphaerica)
AGGCCCATGATAGCACAAGACCGAAGTTGTGCCGGGGTTGCAACAAGTTT
TATGACCGTCTAGATACTCATTTAAGAAGCAAACCACATAAAATCAAGGA
CGCAGGCCAGATTAAAATTGAAACCCAAGCCTGCCAACGTAAGATGAAGG
ATTTCCTCAACTTCCGTGATTTATTTCCAAGAATGAAACACAACACGTAA
GTATATGAATTTCCTTCATTTTCTGTTTCGCAGAACTTGTAAATAAACTT
TTAAGAATGCAGATGGGCTTGGTTTAGCTAtaattactttttttcttttt
ccaatggAAAGTATTGAGTTAGTAACTGACTTAATATATTCATTGATCTT
ATTGCAAAGAAacacattttgtttttttaatctttatatAGGTTACCATC
AACTTTATCTTCATTCGAAACAAGTACGTCCAGGCGTAGTTCAATTTCAA
CGGCAAAAGAACATACGTCAAGtccaaagaaaagaaagactgggtatgtc
ataatattttgcacaTTAAAGCATCAAGGCTTATTTAGAACCTTTACTAA
GGTTTCACTCTTTTCAAGTCATTCATTATTAAGTCCAATCCATCTTTGAA
AACGTGAATGAAATTGTACTTGAATGTGGAAGACTTTGGCAAACCATTAA
GAATAGGGCAGGATATAGGGCAAAACTTATAGTTTACGGGTCACTGCTTT
TTTCTTATACAGTTCATTGAAATCTTTATCGACGGTAACATCAAGTTCGC
AGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035698XLOC_035698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056676-exon-scaffold_281-1491911889:49261..49398TCONS_00056676-exon-scaffold_281-1491911889:49261..49398Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1510915933:49261..49398TCONS_00056676-exon-scaffold_281-1510915933:49261..49398Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1575043694:49261..49398TCONS_00056676-exon-scaffold_281-1575043694:49261..49398Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1491911889:49652..49753TCONS_00056676-exon-scaffold_281-1491911889:49652..49753Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1510915933:49652..49753TCONS_00056676-exon-scaffold_281-1510915933:49652..49753Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1575043694:49652..49753TCONS_00056676-exon-scaffold_281-1575043694:49652..49753Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1491911889:49973..50016TCONS_00056676-exon-scaffold_281-1491911889:49973..50016Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1510915933:49973..50016TCONS_00056676-exon-scaffold_281-1510915933:49973..50016Clytia hemisphaericaexon
TCONS_00056676-exon-scaffold_281-1575043694:49973..50016TCONS_00056676-exon-scaffold_281-1575043694:49973..50016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:49261..50016 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.42153	0.395708	0	0	0	0.346762	0.908199	1.48698	0.730204	0.925965	0.929223	0.131152	0.0926247	0.89915	0	0.12676	0	0.24786	0.164021	0.562056	0.850334	0.122637	0.124916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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