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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056648 ID=TCONS_00056648|Name=TCONS_00056648|organism=Clytia hemisphaerica|type=transcript|length=1958bp
ACccttttgactggaaaaattggccaaattatCGTCTTCAGTGGAAAagt
atactccaatttttgtcccagcTGAAAACAAtcagataccttatcgggga
aaacaatgtcgggggaaagtgatgaaaattttgaggacgtgacgaaattt
tcccccgacgaatttttccccgatatttaatcacccgaccaaaactttta
cccgatttttttatccctgaCCAAAACGTTTATccgattttttaaacccc
aagctaaattaaaatctaaattttttacacgtttattaaccgaaattagt
gctttaaacgtcgaattaaaagaccttttttcgagctagtgaaggaattT
AGTTGGGTAACTAAAGTAACTTGAAGtaactaaattgtaaatttcgtcag
ggaaaagtgacgaatttgaaattttgatcgggggaaagtgacgaaatctT
TCCCCGAAGGaaaaaaaccccgactaaataaaactctttTTTCCGTGATA
AGGTAAGTGAATCCTCACTCCAACTACTGAATTTTAtggcttgaaaacaa
tggaactcAAAACCCCAGCCTTAaaagttttggtccgttatttttaaccc
cactggctgaaaaaaatcctaccgggtctgtgagaagggggtgtaaaaaT
CTCCACGAGCTTTTTTGTGACGCAATTTCATGATAAGCTTTTGAAGAATA
TCGTGAATTTTACAGACCCAAATTGCCCTTTTCGCGCCCAAACCACCCCT
ATTTTACTGTATtccagaattgaaaaatttcgtttgCTGAccctctaacg
gacgatagcatcgccTTGGATCTGTCTCAGCATAATCTGCAGCGAAGATT
ggatggctgtaacttttgatgaaaCCCAAATTagattggaaaaaaatata
caagatagTAAAGCAACCTTTCCTTAATGACGATGCAAGCTCAAAGTCTG
GTCAGACCAAAAGTTATGATAAAATAACATACTTATGAGACAGTAGACTG
ACTCTTTTTTAGACGTATCAGCCTTCGTGAACAAACTATCACTGGTAAAA
ACTTCAAGATCACAGTACTtgtaatttttgtgattttatatatttagaGA
AATATTTTAGTTTCAAGAGAAGAAATTGCAAAATAATCTCTTTAAGAGta
gaaaactatttgaaaatcgaagaaattgttttaaaaatgttactctaagg
gtcagtttttcgcaaaaaattagtctctctaagggtaggtTTTGGAAGGT
TCCGTCTGCACGTACCCGTCATCTGCCAACTGGAGTACCCCCTCCCAACG
GGATTGTAACTCACTCGAGTAAgtttccagaaaaatattcaaccCACTAT
ccatttcagagaaaaaaataatttgttcaGATGTTTAAACAATACTTTGa
agtgtttttttgaaaaatgactagTCATTTTCCAGTATAGTTGACGAATG
GGAATATATTTTTCTAGATTAGTTGCCAATCCGGTGCTTACAGATCCCTA
TAAAACACCCAGTTTCTTCTCTTACCACCATCAACAAGTTttggaagaaa
tttcaaaaagaagaaacattGAAGAAAACTCAAGATGAATGTAAGTAAAG
CACTCTAGAGATAAAGTCGAATATAAAATACattgttttttctaaacttt
GGAATTATTAAGTTGGCGTGACTTAAACTACTCAACAACTATCTCTATAT
TTTAACCAGAATAAGATGGGCCTCTTTATGGGTATTGTATGCTAACCAGC
CCTTTTCGGGAATATTTTTAGTCCTTTGCGAGTATATCGTATCTTGTTTT
CTTCTTAGATTTTGTTGAACTTTGTCGTGTTGGCGCTAGCAAGTCTGGTC
GCTATCAAGTGTCAAACACACAATTTGGCGTTTACCGAGAATGGTCACAA
TTACCAAGAAAAGATCTCTGTGGATAAAAAGAACAACATTGTGATCTACG
ACGTTCCT Run BLAST on NCBI transcript from alignment at scaffold_279:38809..41217+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056648 ID=TCONS_00056648|Name=TCONS_00056648|organism=Clytia hemisphaerica|type=transcript|length=2409bp|location=Sequence derived from alignment at scaffold_279:38809..41217+ (Clytia hemisphaerica)
ACccttttgactggaaaaattggccaaattatCGTCTTCAGTGGAAAagt
atactccaatttttgtcccagcTGAAAACAAtcagataccttatcgggga
aaacaatgtcgggggaaagtgatgaaaattttgaggacgtgacgaaattt
tcccccgacgaatttttccccgatatttaatcacccgaccaaaactttta
cccgatttttttatccctgaCCAAAACGTTTATccgattttttaaacccc
aagctaaattaaaatctaaattttttacacgtttattaaccgaaattagt
gctttaaacgtcgaattaaaagaccttttttcgagctagtgaaggaattT
AGTTGGGTAACTAAAGTAACTTGAAGtaactaaattgtaaatttcgtcag
ggaaaagtgacgaatttgaaattttgatcgggggaaagtgacgaaatctT
TCCCCGAAGGaaaaaaaccccgactaaataaaactctttTTTCCGTGATA
AGGTAAGTGAATCCTCACTCCAACTACTGAATTTTAtggcttgaaaacaa
tggaactcAAAACCCCAGCCTTAaaagttttggtccgttatttttaaccc
cactggctgaaaaaaatcctaccgggtctgtgagaagggggtgtaaaaaT
CTCCACGAGCTTTTTTGTGACGCAATTTCATGATAAGCTTTTGAAGAATA
TCGTGAATTTTACAGACCCAAATTGCCCTTTTCGCGCCCAAACCACCCCT
ATTTTACTGTATtccagaattgaaaaatttcgtttgCTGAccctctaacg
gacgatagcatcgccTTGGATCTGTCTCAGCATAATCTGCAGCGAAGATT
ggatggctgtaacttttgatgaaaCCCAAATTagattggaaaaaaatata
caagatagTAAAGCAACCTTTCCTTAATGACGATGCAAGCTCAAAGTCTG
GTCAGACCAAAAGTTATGATAAAATAACATACTTATGAGACAGTAGACTG
ACTCTTTTTTAGACGTATCAGCCTTCGTGAACAAACTATCACTGGTAAAA
ACTTCAAGATCACAGTACTtgtaatttttgtgattttatatatttagaGA
AATATTTTAGTTTCAAGAGAAGAAATTGCAAAATAATCTCTTTAAGAGta
gaaaactatttgaaaatcgaagaaattgttttaaaaatgttactctaagg
gtcagtttttcgcaaaaaattagtctctctaagggtaggtTTTGGAAGGT
TCCGTCTGCACGTACCCGTCATCTGCCAACTGGAGTACCCCCTCCCAACG
GGATTGTAACTCACTCGAGTAAgtttccagaaaaatattcaaccCACTAT
ccatttcagagaaaaaaataatttgttcaGATGTTTAAACAATACTTTGa
agtgtttttttgaaaaatgactagTCATTTTCCAGTATAGTTGACGAATG
GGAATATATTTTTCTAGATTAGTTGCCAATCCGGTGCTTACAGATCCCTA
TAAAACACCCAGTTTCTTCTCTTACCACCATCAACAAGTTttggaagaaa
tttcaaaaagaagaaacattGAAGAAAACTCAAGATGAATGTAAGTAAAG
CACTCTAGAGATAAAGTCGAATATAAAATACattgttttttctaaacttt
GGAATTATTAAGTTGGCGTGACTTAAACTACTCAACAACTATCTCTATAT
TTTAACCAGAATAAGATGGGCCTCTTTATGGGTATTGTATGCTAACCAGC
CCTTTTCGGGAATATTTTTAGTCCTTTGCGAGTATATCGTATCTTGTTTT
CTTCTTAGATTTTGTTGAACTTTGTCGTGTTGGCGCTAGCAAGTCTGGTC
GCTATCAAGGTATGTTTTCCTTTATTCTGTGTGCGACTTAAAGCTGCTTA
GATAGAAAAATACAACCCGGATTGGCATATCGCGTTTACTATTGATTAGC
TAAACAAGAATGTTTTCTGAAATTAAAGCTAAAGACAGAAAAGAATCTTT
AAAATAGCTAAACGTAGTGGTCTCATAATTTTTAGCTCACTCCAAGTCAC
CGTGTTCGCAAACATCGGATTGATATGtcaataggccttttcataaatta
ttattGATCGCAACTGTACACTACCTCGTTTTGAAGCCATTAACAAGGCG
ATTAAATCCCTTGAATATTCAAGTGTTACTTTTAGAAATAGAGTTATCTT
CTTATGAAGTTATttgggaatcaattaccatagcaatatcTTGAAAACGA
GGTCagcgttgctcgtgacgtaatttatacaAAGGTCTATTTTTTGATAT
CTTTTAACAGTGTCAAACACACAATTTGGCGTTTACCGAGAATGGTCACA
ATTACCAAGAAAAGATCTCTGTGGATAAAAAGAACAACATTGTGATCTAC
GACGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056648-exon-scaffold_279-1491911889:38809..40667 | TCONS_00056648-exon-scaffold_279-1491911889:38809..40667 | Clytia hemisphaerica | exon |
| TCONS_00056648-exon-scaffold_279-1510915933:38809..40667 | TCONS_00056648-exon-scaffold_279-1510915933:38809..40667 | Clytia hemisphaerica | exon |
| TCONS_00056648-exon-scaffold_279-1575043694:38809..40667 | TCONS_00056648-exon-scaffold_279-1575043694:38809..40667 | Clytia hemisphaerica | exon |
| TCONS_00056648-exon-scaffold_279-1491911889:41119..41217 | TCONS_00056648-exon-scaffold_279-1491911889:41119..41217 | Clytia hemisphaerica | exon |
| TCONS_00056648-exon-scaffold_279-1510915933:41119..41217 | TCONS_00056648-exon-scaffold_279-1510915933:41119..41217 | Clytia hemisphaerica | exon |
| TCONS_00056648-exon-scaffold_279-1575043694:41119..41217 | TCONS_00056648-exon-scaffold_279-1575043694:41119..41217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_279 | supercontig | scaffold_279:38809..41217 + |
Blast
The following BLAST results are available for this feature:
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