TCONS_00056648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056648
Unique NameTCONS_00056648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056648 ID=TCONS_00056648|Name=TCONS_00056648|organism=Clytia hemisphaerica|type=transcript|length=1958bp
ACccttttgactggaaaaattggccaaattatCGTCTTCAGTGGAAAagt
atactccaatttttgtcccagcTGAAAACAAtcagataccttatcgggga
aaacaatgtcgggggaaagtgatgaaaattttgaggacgtgacgaaattt
tcccccgacgaatttttccccgatatttaatcacccgaccaaaactttta
cccgatttttttatccctgaCCAAAACGTTTATccgattttttaaacccc
aagctaaattaaaatctaaattttttacacgtttattaaccgaaattagt
gctttaaacgtcgaattaaaagaccttttttcgagctagtgaaggaattT
AGTTGGGTAACTAAAGTAACTTGAAGtaactaaattgtaaatttcgtcag
ggaaaagtgacgaatttgaaattttgatcgggggaaagtgacgaaatctT
TCCCCGAAGGaaaaaaaccccgactaaataaaactctttTTTCCGTGATA
AGGTAAGTGAATCCTCACTCCAACTACTGAATTTTAtggcttgaaaacaa
tggaactcAAAACCCCAGCCTTAaaagttttggtccgttatttttaaccc
cactggctgaaaaaaatcctaccgggtctgtgagaagggggtgtaaaaaT
CTCCACGAGCTTTTTTGTGACGCAATTTCATGATAAGCTTTTGAAGAATA
TCGTGAATTTTACAGACCCAAATTGCCCTTTTCGCGCCCAAACCACCCCT
ATTTTACTGTATtccagaattgaaaaatttcgtttgCTGAccctctaacg
gacgatagcatcgccTTGGATCTGTCTCAGCATAATCTGCAGCGAAGATT
ggatggctgtaacttttgatgaaaCCCAAATTagattggaaaaaaatata
caagatagTAAAGCAACCTTTCCTTAATGACGATGCAAGCTCAAAGTCTG
GTCAGACCAAAAGTTATGATAAAATAACATACTTATGAGACAGTAGACTG
ACTCTTTTTTAGACGTATCAGCCTTCGTGAACAAACTATCACTGGTAAAA
ACTTCAAGATCACAGTACTtgtaatttttgtgattttatatatttagaGA
AATATTTTAGTTTCAAGAGAAGAAATTGCAAAATAATCTCTTTAAGAGta
gaaaactatttgaaaatcgaagaaattgttttaaaaatgttactctaagg
gtcagtttttcgcaaaaaattagtctctctaagggtaggtTTTGGAAGGT
TCCGTCTGCACGTACCCGTCATCTGCCAACTGGAGTACCCCCTCCCAACG
GGATTGTAACTCACTCGAGTAAgtttccagaaaaatattcaaccCACTAT
ccatttcagagaaaaaaataatttgttcaGATGTTTAAACAATACTTTGa
agtgtttttttgaaaaatgactagTCATTTTCCAGTATAGTTGACGAATG
GGAATATATTTTTCTAGATTAGTTGCCAATCCGGTGCTTACAGATCCCTA
TAAAACACCCAGTTTCTTCTCTTACCACCATCAACAAGTTttggaagaaa
tttcaaaaagaagaaacattGAAGAAAACTCAAGATGAATGTAAGTAAAG
CACTCTAGAGATAAAGTCGAATATAAAATACattgttttttctaaacttt
GGAATTATTAAGTTGGCGTGACTTAAACTACTCAACAACTATCTCTATAT
TTTAACCAGAATAAGATGGGCCTCTTTATGGGTATTGTATGCTAACCAGC
CCTTTTCGGGAATATTTTTAGTCCTTTGCGAGTATATCGTATCTTGTTTT
CTTCTTAGATTTTGTTGAACTTTGTCGTGTTGGCGCTAGCAAGTCTGGTC
GCTATCAAGTGTCAAACACACAATTTGGCGTTTACCGAGAATGGTCACAA
TTACCAAGAAAAGATCTCTGTGGATAAAAAGAACAACATTGTGATCTACG
ACGTTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_279:38809..41217+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056648 ID=TCONS_00056648|Name=TCONS_00056648|organism=Clytia hemisphaerica|type=transcript|length=2409bp|location=Sequence derived from alignment at scaffold_279:38809..41217+ (Clytia hemisphaerica)
ACccttttgactggaaaaattggccaaattatCGTCTTCAGTGGAAAagt atactccaatttttgtcccagcTGAAAACAAtcagataccttatcgggga aaacaatgtcgggggaaagtgatgaaaattttgaggacgtgacgaaattt tcccccgacgaatttttccccgatatttaatcacccgaccaaaactttta cccgatttttttatccctgaCCAAAACGTTTATccgattttttaaacccc aagctaaattaaaatctaaattttttacacgtttattaaccgaaattagt gctttaaacgtcgaattaaaagaccttttttcgagctagtgaaggaattT AGTTGGGTAACTAAAGTAACTTGAAGtaactaaattgtaaatttcgtcag ggaaaagtgacgaatttgaaattttgatcgggggaaagtgacgaaatctT TCCCCGAAGGaaaaaaaccccgactaaataaaactctttTTTCCGTGATA AGGTAAGTGAATCCTCACTCCAACTACTGAATTTTAtggcttgaaaacaa tggaactcAAAACCCCAGCCTTAaaagttttggtccgttatttttaaccc cactggctgaaaaaaatcctaccgggtctgtgagaagggggtgtaaaaaT CTCCACGAGCTTTTTTGTGACGCAATTTCATGATAAGCTTTTGAAGAATA TCGTGAATTTTACAGACCCAAATTGCCCTTTTCGCGCCCAAACCACCCCT ATTTTACTGTATtccagaattgaaaaatttcgtttgCTGAccctctaacg gacgatagcatcgccTTGGATCTGTCTCAGCATAATCTGCAGCGAAGATT ggatggctgtaacttttgatgaaaCCCAAATTagattggaaaaaaatata caagatagTAAAGCAACCTTTCCTTAATGACGATGCAAGCTCAAAGTCTG GTCAGACCAAAAGTTATGATAAAATAACATACTTATGAGACAGTAGACTG ACTCTTTTTTAGACGTATCAGCCTTCGTGAACAAACTATCACTGGTAAAA ACTTCAAGATCACAGTACTtgtaatttttgtgattttatatatttagaGA AATATTTTAGTTTCAAGAGAAGAAATTGCAAAATAATCTCTTTAAGAGta gaaaactatttgaaaatcgaagaaattgttttaaaaatgttactctaagg gtcagtttttcgcaaaaaattagtctctctaagggtaggtTTTGGAAGGT TCCGTCTGCACGTACCCGTCATCTGCCAACTGGAGTACCCCCTCCCAACG GGATTGTAACTCACTCGAGTAAgtttccagaaaaatattcaaccCACTAT ccatttcagagaaaaaaataatttgttcaGATGTTTAAACAATACTTTGa agtgtttttttgaaaaatgactagTCATTTTCCAGTATAGTTGACGAATG GGAATATATTTTTCTAGATTAGTTGCCAATCCGGTGCTTACAGATCCCTA TAAAACACCCAGTTTCTTCTCTTACCACCATCAACAAGTTttggaagaaa tttcaaaaagaagaaacattGAAGAAAACTCAAGATGAATGTAAGTAAAG CACTCTAGAGATAAAGTCGAATATAAAATACattgttttttctaaacttt GGAATTATTAAGTTGGCGTGACTTAAACTACTCAACAACTATCTCTATAT TTTAACCAGAATAAGATGGGCCTCTTTATGGGTATTGTATGCTAACCAGC CCTTTTCGGGAATATTTTTAGTCCTTTGCGAGTATATCGTATCTTGTTTT CTTCTTAGATTTTGTTGAACTTTGTCGTGTTGGCGCTAGCAAGTCTGGTC GCTATCAAGGTATGTTTTCCTTTATTCTGTGTGCGACTTAAAGCTGCTTA GATAGAAAAATACAACCCGGATTGGCATATCGCGTTTACTATTGATTAGC TAAACAAGAATGTTTTCTGAAATTAAAGCTAAAGACAGAAAAGAATCTTT AAAATAGCTAAACGTAGTGGTCTCATAATTTTTAGCTCACTCCAAGTCAC CGTGTTCGCAAACATCGGATTGATATGtcaataggccttttcataaatta ttattGATCGCAACTGTACACTACCTCGTTTTGAAGCCATTAACAAGGCG ATTAAATCCCTTGAATATTCAAGTGTTACTTTTAGAAATAGAGTTATCTT CTTATGAAGTTATttgggaatcaattaccatagcaatatcTTGAAAACGA GGTCagcgttgctcgtgacgtaatttatacaAAGGTCTATTTTTTGATAT CTTTTAACAGTGTCAAACACACAATTTGGCGTTTACCGAGAATGGTCACA ATTACCAAGAAAAGATCTCTGTGGATAAAAAGAACAACATTGTGATCTAC GACGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035679XLOC_035679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056648-exon-scaffold_279-1491911889:38809..40667TCONS_00056648-exon-scaffold_279-1491911889:38809..40667Clytia hemisphaericaexon
TCONS_00056648-exon-scaffold_279-1510915933:38809..40667TCONS_00056648-exon-scaffold_279-1510915933:38809..40667Clytia hemisphaericaexon
TCONS_00056648-exon-scaffold_279-1575043694:38809..40667TCONS_00056648-exon-scaffold_279-1575043694:38809..40667Clytia hemisphaericaexon
TCONS_00056648-exon-scaffold_279-1491911889:41119..41217TCONS_00056648-exon-scaffold_279-1491911889:41119..41217Clytia hemisphaericaexon
TCONS_00056648-exon-scaffold_279-1510915933:41119..41217TCONS_00056648-exon-scaffold_279-1510915933:41119..41217Clytia hemisphaericaexon
TCONS_00056648-exon-scaffold_279-1575043694:41119..41217TCONS_00056648-exon-scaffold_279-1575043694:41119..41217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_279supercontigscaffold_279:38809..41217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.29329 0.141214 0 0.253177 0.203304 0 0 0.176227 0.0663166 0.466371 8.59335 8.12874 1.27778 0.851666 0.577303 0.118687 0.314696 0.629498 2.70982 2.948 0.113828 0.292478 0.223151 0.853335 15.5248 26.1795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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