TCONS_00056627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056627
Unique NameTCONS_00056627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056627 ID=TCONS_00056627|Name=TCONS_00056627|organism=Clytia hemisphaerica|type=transcript|length=683bp
ttgggatttcccttttttctcaaatattatgaccggGATTGTAGGTCACA
GTGTAGAAACCATACTGAATGACCGCCTGCTGAACACTTAATCATCCAAG
CTAAACTTACCAATGTTCCTATAAAAGAAATTGCGAGACAATCAAAGAAA
TAGAAATGACCGAGACTCAATCAAAACGTTCTAGTACAAGAACACAGATA
TTCTTTTACCTACTAGATATAGTCTAACTGCTCACAGATTTCCCGTGGTA
GTGTATTCAGTTTAGAAGTCGACTAGTCCGCCatattgttttgtatttta
ccttggattttcgaacgttcgaattaaaaaaaaacaagatggTGGATTAG
TCAGCTCTAAAATTAGACAAGCTTCCTTTTATATGAGACgcccgatccag
tcaagtagttagagaTCTGTGTGCAAGACAGAGAAAGATAGAGGAAGAAA
ACTTAACGCGCTTTTTCTTGAAATAATCGAAGGAACTACTACACTGTTCA
TGATTCTTTAACTAAAGATGGCTCCTATATgaggaattttcttttttttt
ttaggagAAATATTCTTTAatagtaattaaatattaaattaaaacgttac
aatatataaattgcttaaaatacgtagagctaggaaattcaaagttaaat
aaagaaaaaaaattgaaatcacgaCAAAAgcaa
Run BLAST on NCBI

transcript from alignment at scaffold_277:75250..75932

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056627 ID=TCONS_00056627|Name=TCONS_00056627|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at scaffold_277:75250..75932 (Clytia hemisphaerica)
ttgcTTTTGtcgtgatttcaattttttttctttatttaactttgaatttc
ctagctctacgtattttaagcaatttatatattgtaacgttttaatttaa
tatttaattactatTAAAGAATATTTctcctaaaaaaaaaaagaaaattc
ctcATATAGGAGCCATCTTTAGTTAAAGAATCATGAACAGTGTAGTAGTT
CCTTCGATTATTTCAAGAAAAAGCGCGTTAAGTTTTCTTCCTCTATCTTT
CTCTGTCTTGCACACAGAtctctaactacttgactggatcgggcGTCTCA
TATAAAAGGAAGCTTGTCTAATTTTAGAGCTGACTAATCCAccatcttgt
ttttttttaattcgaacgttcgaaaatccaaggtaaaatacaaaacaata
tGGCGGACTAGTCGACTTCTAAACTGAATACACTACCACGGGAAATCTGT
GAGCAGTTAGACTATATCTAGTAGGTAAAAGAATATCTGTGTTCTTGTAC
TAGAACGTTTTGATTGAGTCTCGGTCATTTCTATTTCTTTGATTGTCTCG
CAATTTCTTTTATAGGAACATTGGTAAGTTTAGCTTGGATGATTAAGTGT
TCAGCAGGCGGTCATTCAGTATGGTTTCTACACTGTGACCTACAATCccg
gtcataatatttgagaaaaaagggaaatcccaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035661XLOC_035661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056627-exon-scaffold_277-1491911889:75250..75932TCONS_00056627-exon-scaffold_277-1491911889:75250..75932Clytia hemisphaericaexon
TCONS_00056627-exon-scaffold_277-1510915933:75250..75932TCONS_00056627-exon-scaffold_277-1510915933:75250..75932Clytia hemisphaericaexon
TCONS_00056627-exon-scaffold_277-1575043694:75250..75932TCONS_00056627-exon-scaffold_277-1575043694:75250..75932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:75250..75932 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29939	0.510917	1.52543	1.40949	0.100936	0.319044	0.57737	0.180176	0.126145	0.234377	0	0.149544	0.39823	0.516957	0.297506	0.31927	0.112376	0.230363	0	0.333035	0.217101	0.105894	0.0858187	0.234065	0.723245	0.358599	0.307893	0.10953	0.415375	0.253921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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