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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056626 ID=TCONS_00056626|Name=TCONS_00056626|organism=Clytia hemisphaerica|type=transcript|length=1230bp
CCAAGACGCGAAAGAAGAGACCTACGGAGACGTGTCATACCAAGACGCGC
AAGAAGGGGCCTACGTAGACGTGGAATACCAAGACAGGCAAGAAGAGACC
TACGTAGACTTGTCATACCAAGACGCGCAAGAAGAGACCTACGGAGACGT
GGAATACCAAGACGCACAAGAAGGGGCCTCCGTAGACCTGGAATACCAAG
ACGCGCAAGAAGAGACCTACAGAGACGTGTCATACCAAGACGCGCAAGAA
GGGGCCTACGTAGACGTGGAATACCAAGACAGGCAAGAAGAGGCCTACGG
AGACGTGGAATACCAAGATAGGCAAGAAGGGGCCTACAGAGACGTGTCAT
ACCAAGGCGCGCAAGAAATCCCTGAGAATGTTGCATATCTTGACGTGCAA
GAAAGGGAGAGCGTTGTACACCTACAAAGAGACATCAGTCTCGATCGTGA
CGAGCAACATGTGCTAGACGCAGTCCCCCTTTTATTCAATAGTGAACCAG
GGATTAACGAAAAACATCAATGTGATGCCCAAGACGGCACAAATAACCAA
TCAAACTATGAATGTATCGAATGTGGATATATTGATAAACTCCTTCTAGA
AACGATAAATTCGAAGCAAAGCCAAGAAGGAGAACATTATCATCAGTTGT
TTATCAATATCACGTTTACACATCAATCTATGCGAGCAATGTCCTTTGGC
AATATATCCTTCACGCATCAATCTATACCAACAAATAATAATATGTTGCC
TTATATAACACCTGTTAGGTAGCAACAAGACCTTTCTCgagaaaaaagct
ttttagatctAGCTTCTGGAATGTCATCATAATACTCCCTGGTGCAATAC
ATCAAATTGTAGGAGAAATAATTGATTAACAGGACGGTGTCTGGTTCAGT
GGGCCAGGATTTGAAAGAACTCAAATCTTTGAATCCATGCATCAACACTA
TCATATTCTTCTTGTCatgaagattgaaaatatgAGCATAATAACAACAT
CATCGGGTCGGCACCATTTTCAACTTCAGCCAACGGGAACTTAGATATAC
TATCTCGAGAaaggtcaaataaaaaatcttcagcGCCTTTATCTAATGTA
AATACATTGTAACCATCATTAATTTAGTATTTCATGGAAACATTATAAca
tcttgttttattttttgtaaaggaaatatattaCCATCTTAAAAGCTGAA
AATTGATCATTTGTTTATTCATGTCTCATC Run BLAST on NCBI protein sequence of TCONS_00056626-protein >TCONS_00056626-protein ID=TCONS_00056626-protein|Name=TCONS_00056626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
QDAKEETYGDVSYQDAQEGAYVDVEYQDRQEETYVDLSYQDAQEETYGDV
EYQDAQEGASVDLEYQDAQEETYRDVSYQDAQEGAYVDVEYQDRQEEAYG
DVEYQDRQEGAYRDVSYQGAQEIPENVAYLDVQERESVVHLQRDISLDRD
EQHVLDAVPLLFNSEPGINEKHQCDAQDGTNNQSNYECIECGYIDKLLLE
TINSKQSQEGEHYHQLFINITFTHQSMRAMSFGNISFTHQSIPTNNNMLP
YITPVR Run BLAST on NCBI transcript from alignment at scaffold_277:70848..72077 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056626 ID=TCONS_00056626|Name=TCONS_00056626|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at scaffold_277:70848..72077 (Clytia hemisphaerica)
GATGAGACATGAATAAACAAATGATCAATTTTCAGCTTTTAAGATGGtaa
tatatttcctttacaaaaaataaaacaagatgTTATAATGTTTCCATGAA
ATACTAAATTAATGATGGTTACAATGTATTTACATTAGATAAAGGCgctg
aagattttttatttgaccttTCTCGAGATAGTATATCTAAGTTCCCGTTG
GCTGAAGTTGAAAATGGTGCCGACCCGATGATGTTGTTATTATGCTcata
ttttcaatcttcatGACAAGAAGAATATGATAGTGTTGATGCATGGATTC
AAAGATTTGAGTTCTTTCAAATCCTGGCCCACTGAACCAGACACCGTCCT
GTTAATCAATTATTTCTCCTACAATTTGATGTATTGCACCAGGGAGTATT
ATGATGACATTCCAGAAGCTagatctaaaaagcttttttctcGAGAAAGG
TCTTGTTGCTACCTAACAGGTGTTATATAAGGCAACATATTATTATTTGT
TGGTATAGATTGATGCGTGAAGGATATATTGCCAAAGGACATTGCTCGCA
TAGATTGATGTGTAAACGTGATATTGATAAACAACTGATGATAATGTTCT
CCTTCTTGGCTTTGCTTCGAATTTATCGTTTCTAGAAGGAGTTTATCAAT
ATATCCACATTCGATACATTCATAGTTTGATTGGTTATTTGTGCCGTCTT
GGGCATCACATTGATGTTTTTCGTTAATCCCTGGTTCACTATTGAATAAA
AGGGGGACTGCGTCTAGCACATGTTGCTCGTCACGATCGAGACTGATGTC
TCTTTGTAGGTGTACAACGCTCTCCCTTTCTTGCACGTCAAGATATGCAA
CATTCTCAGGGATTTCTTGCGCGCCTTGGTATGACACGTCTCTGTAGGCC
CCTTCTTGCCTATCTTGGTATTCCACGTCTCCGTAGGCCTCTTCTTGCCT
GTCTTGGTATTCCACGTCTACGTAGGCCCCTTCTTGCGCGTCTTGGTATG
ACACGTCTCTGTAGGTCTCTTCTTGCGCGTCTTGGTATTCCAGGTCTACG
GAGGCCCCTTCTTGTGCGTCTTGGTATTCCACGTCTCCGTAGGTCTCTTC
TTGCGCGTCTTGGTATGACAAGTCTACGTAGGTCTCTTCTTGCCTGTCTT
GGTATTCCACGTCTACGTAGGCCCCTTCTTGCGCGTCTTGGTATGACACG
TCTCCGTAGGTCTCTTCTTTCGCGTCTTGG Coding sequence (CDS) from alignment at scaffold_277:70848..72077 >TCONS_00056626 ID=TCONS_00056626|Name=TCONS_00056626|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_277:70848..72077 (Clytia hemisphaerica)
CTACCTAACAGGTGTTATATAAGGCAACATATTATTATTTGTTGGTATAG
ATTGATGCGTGAAGGATATATTGCCAAAGGACATTGCTCGCATAGATTGA
TGTGTAAACGTGATATTGATAAACAACTGATGATAATGTTCTCCTTCTTG
GCTTTGCTTCGAATTTATCGTTTCTAGAAGGAGTTTATCAATATATCCAC
ATTCGATACATTCATAGTTTGATTGGTTATTTGTGCCGTCTTGGGCATCA
CATTGATGTTTTTCGTTAATCCCTGGTTCACTATTGAATAAAAGGGGGAC
TGCGTCTAGCACATGTTGCTCGTCACGATCGAGACTGATGTCTCTTTGTA
GGTGTACAACGCTCTCCCTTTCTTGCACGTCAAGATATGCAACATTCTCA
GGGATTTCTTGCGCGCCTTGGTATGACACGTCTCTGTAGGCCCCTTCTTG
CCTATCTTGGTATTCCACGTCTCCGTAGGCCTCTTCTTGCCTGTCTTGGT
ATTCCACGTCTACGTAGGCCCCTTCTTGCGCGTCTTGGTATGACACGTCT
CTGTAGGTCTCTTCTTGCGCGTCTTGGTATTCCAGGTCTACGGAGGCCCC
TTCTTGTGCGTCTTGGTATTCCACGTCTCCGTAGGTCTCTTCTTGCGCGT
CTTGGTATGACAAGTCTACGTAGGTCTCTTCTTGCCTGTCTTGGTATTCC
ACGTCTACGTAGGCCCCTTCTTGCGCGTCTTGGTATGACACGTCTCCGTA
GGTCTCTTCTTTCGCGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056626-exon-scaffold_277-1491911889:70848..72077 | TCONS_00056626-exon-scaffold_277-1491911889:70848..72077 | Clytia hemisphaerica | exon |
| TCONS_00056626-exon-scaffold_277-1510915933:70848..72077 | TCONS_00056626-exon-scaffold_277-1510915933:70848..72077 | Clytia hemisphaerica | exon |
| TCONS_00056626-exon-scaffold_277-1575043694:70848..72077 | TCONS_00056626-exon-scaffold_277-1575043694:70848..72077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:70848..72077 . |
Blast
The following BLAST results are available for this feature:
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