TCONS_00056566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056566
Unique NameTCONS_00056566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056566 ID=TCONS_00056566|Name=TCONS_00056566|organism=Clytia hemisphaerica|type=transcript|length=1229bp
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAattcgaaaaaa
gaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGGCCAGGCGATAAACC
CGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAATGAT
CTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaacttttt
tgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTTGTTT
GTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatatttgc
aaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgggtgc
tttccaaacctatccaaagtctttcaaagtctttcaaagtcttttttact
tgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGTACGA
GtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatgtttg
ttagtttgtttggtccagggttatggaatctaggggaggctgagtgttgg
acgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGGGGAC
GCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttggtagt
ttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTtagct
ttttaaactttatatctattgttttgttggttaactctttttttcgcata
aaattctcatttcttgacataatatttgattggtttgatttatatattta
gaaaaattcaaataaataatagaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_277:192109..195991+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056566 ID=TCONS_00056566|Name=TCONS_00056566|organism=Clytia hemisphaerica|type=transcript|length=3883bp|location=Sequence derived from alignment at scaffold_277:192109..195991+ (Clytia hemisphaerica)
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
TATGTATTATAGTTGACGATCAAAAACAAGAATATCCCAGTAAATTTAAC
CTAATTACAGATGGtcataatttttcttaaaggttttgttttttaaataa
gagtgatatcgtttgcttactcatcacttttaattcacaagctttttcac
attgaattgacacggatgatcggatgtggagcaagattggtcaaaaaaag
GAGAAGAAAAGTACTTTTTTGTATAtgtcagcacaatataacaaaaggta
gacactgtcctgatatgaaatatgtgtctgatatgaaacgggaacactta
tgtaaaaatgaaacctttaagCACACGGTAAACCTCTGTACCTCTGTATA
AAGCActgatttataaagcccaaatggctagatggcgtgctttagctgaa
aagtgtgccgtggttaggtaggaaatcctacctaagtcacgtgacattac
attAGAATTTTAGCGCTTGACCAATAGAAACtacgcgggttttcgaaaaa
caatagcaacaatttGCTTTGCTAAAAGCGCAacttacagaaatctgtgg
cgcttgaaaattatccATCTGAGGAATATAGCCACTTTCATAACAAGAAT
CTTATGACGTGCCACGATCTTTTTTCTGATACGGTGAACTATTTTCCGAT
ACAATCACGCAATtctgttgtcattcccagtcctttgaAACGAGCACGGT
CCTTACGAACCCAAGATGGCATATTTGTCAGATCgcttgttttcacacat
ccctttagaacTTTAGCGTTGTTTgcagaaaacaatgaaaatctatctga
tctcaggttaactAAATTTTACTCACAAGTACCTAAAAACTGTCACATAA
CTTGAAATTTAGTCTTTTCACCAAACTGGATCCGCTTATTAAATTATACT
AAGAGCATAAATTGCATCCaagaattattttaaagtttATGTCAAGTATA
TTTGGGTACACTCACTgagtagtctgaatcgcagacctctatagaaatac
ttctataagaaacttttttcgctagaggatgagcagaagcctactcATTG
AGGTATCAAGATCACATCGACAGGACTAGATATAATTTTACTTGCACACC
AGAGATGTAAAGCCATTTGCCTTTAGGCAAAGTTTTAacactacaatgac
ttctttgcgggcaataattacaaaaaaactccgatcaaagatggcggata
tagcttcgTCCAAGGTCGATAAAGGTTAGTAGGTATAATTTACAGATGAT
CTTTTTAATTCTCATAGGATAGCGAAAGAGTGGTTAAGAAGGATGGACAA
TCAGCTTTTGATGAAGAGCGCATGCATGGGCCGACAGAGAAAGAAGCAGT
GCTCGATCAAGGAGTTGTTATGAAGGATGGACAATCAGCTTTTGATGAAG
AGCAAATGCGTGGTCCACCAGAAAAAGAAGCAGTTCTTGATCAATTTATG
GTGAGCTTTCTTTAAGCTATTTGTTTAACTATAATAAATActgaaaaatg
tcaatatgtTTCTGGCTTAATTTTTTTAGGCAGCTGGCATCCACTAAAAG
ATTCGTACTCCTTATCGTACCTATAGTACTTGAACTACCTGCTATTTTGT
CCTATCCAGATACACTCGTTTTTATAactaaaggcttcaaaaatgccaaa
aaatgctaaaaaataagaactAATGAGCATGGAATTTCTGTTAGTAATTA
GTAATTTGTATAAAGCACCAAATACCTGTATTTTGCCCTCTACTTAAAAA
AATGAATCCTTTTacaatcaaaaatctttttcctcCACATAGGATAAAAG
AAAGATTACTAGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATC
AATTAGAGGTGAGATTAttttaagccccccccccccccctccccccaaaa
aaaaaaaaaaatccccaTTAATTAGAGGTTGGGTTTttttaagccccccc
cccccctcatctgcgaaaagaaataaatttttacaaaatcagCTTTTCGT
CCTTGAAAGCTCTTTTCCAAATTATAAatagtctgtacacagacccgata
tctacgtctaatttcaaaattcattgccgtagaggatCTGTTTattattg
tcttttctcatttgagatttttcaaaccgacagCTGCGATGGAGTGCGGG
TGAGAGAAGAGAGATAATAGGAGGGGTGTTTGAAATCTtctagacttaaa
actttccctCTACAGGGGCTTTCATTCTTtccaatattttgatttattgt
TTAGGATGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAActcg
aaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattgg
cCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGA
TgaactcgaaaaaaaaaattggccaagACCAGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGGCCAGGCGATGAActcgaaaaaagaaatt
ggcCAAGACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGC
GATGaactagaaaaaagaaattggccAAGACCTGGTGATGAActcgaaaa
aagaaattggcCAAGGCCAGGCGATGAACTCGAAAGAAGAAATTGGCCAA
GACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAA
ctcgaaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaa
ttggcCAAGACCAAGCGATGAACTCGAAAAAATAAATTGGCCAAGACCTG
GCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAACTCGAA
AAAAGAAATCGGCCAAGACCTGGTGATGAACTAGAAAAAGGAAATCGGCC
AAGACCTGGTGATGAACTAGAAAAAGGAAATTGGCCAAGACCAGGCGATA
AACCCGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAA
TGATCTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaact
tttttgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTT
GTTTGTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatat
ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgg
gtgctttccaaacctatccaaagtctttcaaagtctttcaaagtcttttt
tacttgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGT
ACGAGtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatg
tttgttagtttgtttggtccagggttatggaatctaggggaggctgagtg
ttggacgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGG
GGACGCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttgg
tagtttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTt
agctttttaaactttatatctattgttttgttggttaactctttttttcg
cataaaattctcatttcttgacataatatttgattggtttgatttatata
tttagaaaaattcaaataaataatagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035643XLOC_035643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056566-exon-scaffold_277-1491911889:192109..192207TCONS_00056566-exon-scaffold_277-1491911889:192109..192207Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1510915933:192109..192207TCONS_00056566-exon-scaffold_277-1510915933:192109..192207Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1575043694:192109..192207TCONS_00056566-exon-scaffold_277-1575043694:192109..192207Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1491911889:193476..193658TCONS_00056566-exon-scaffold_277-1491911889:193476..193658Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1510915933:193476..193658TCONS_00056566-exon-scaffold_277-1510915933:193476..193658Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1575043694:193476..193658TCONS_00056566-exon-scaffold_277-1575043694:193476..193658Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1491911889:194001..194066TCONS_00056566-exon-scaffold_277-1491911889:194001..194066Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1510915933:194001..194066TCONS_00056566-exon-scaffold_277-1510915933:194001..194066Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1575043694:194001..194066TCONS_00056566-exon-scaffold_277-1575043694:194001..194066Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1491911889:194463..194496TCONS_00056566-exon-scaffold_277-1491911889:194463..194496Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1510915933:194463..194496TCONS_00056566-exon-scaffold_277-1510915933:194463..194496Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1575043694:194463..194496TCONS_00056566-exon-scaffold_277-1575043694:194463..194496Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1491911889:194677..194784TCONS_00056566-exon-scaffold_277-1491911889:194677..194784Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1510915933:194677..194784TCONS_00056566-exon-scaffold_277-1510915933:194677..194784Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1575043694:194677..194784TCONS_00056566-exon-scaffold_277-1575043694:194677..194784Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1491911889:195253..195991TCONS_00056566-exon-scaffold_277-1491911889:195253..195991Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1510915933:195253..195991TCONS_00056566-exon-scaffold_277-1510915933:195253..195991Clytia hemisphaericaexon
TCONS_00056566-exon-scaffold_277-1575043694:195253..195991TCONS_00056566-exon-scaffold_277-1575043694:195253..195991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:192109..195991 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.479058	0.714709	0.772754	1.53312	3.69416	2.89625	5.25063	4.38019	4.52012	1.6217	5.44454	5.75088	4.32092	6.89329	4.04442	3.34485	3.55151	2.95939	3.13464	4.14656	1.44882	0.341967	0.571738	0.791928	3.27616	3.16105	3.37206	3.49899	0.880004	0.841304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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