TCONS_00056562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056562
Unique NameTCONS_00056562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056562 ID=TCONS_00056562|Name=TCONS_00056562|organism=Clytia hemisphaerica|type=transcript|length=3212bp
CTTATGAAAATTTTGCTTCCGTTACGGAGCGAGGCCTCTGGGACAAAAAC
TAACTTAATACAATTTTCTGTTTACAGATAAGAAATCTTTAACAATCGTT
GTATGTTTGAATATGATTTGGTCTCAAATACTTGCAACTTTATTTCTATG
GATGGTTCATTTTGAAGATTTGGTGGCTGCCATCTCTTGTGGCAAAATGA
GAAAGaTTCCAGAGAATAATCACGGCGTTGAACCAATGGTACTAGTTGAT
CACGAAGAAGTAATCGAACTAAAGACCAAGAGAGTGATACCCGTTTTATC
ACCTGAATGGAGTTTCCAAGTGAAATTTAACATCAGTGCAAATCACACAA
CAACTGATGATTACTGTAGTATCGTGCATGTTGCTCACAACTCACAGCTA
TATGGTAAAAGAACGCCAGCATTATTTTACCAAAGAGTGAACAAAGAATT
ACTGGTCGATTCAGCTGTAAATGGTAATAATAAGTATCGAAATAGATATG
GTATTATGCTGAACACAGAATACAATGTAGAGATTCGGCAGCGTTACAAA
AGTGGAGGTGTTTACAAATATTCCATCTTTCTCAATGGAGATGAAGTCCA
TTCAACCGATAATACACAAGCTCAACAATTTTATGATGTTACGGTTTATA
TTTCTAACCCCTGGGTATTTCCATGTATTGGGGTTGTATCAGAACTTAAA
ATGACCAACTTTTTGTAACTGAACCACCATGTGTCGTGAGCACTTCCAGA
AAATACTTGTTTTGGGGACAAAATTGCTCTAAGTAGGGGTGATTTTGTAC
ACTCcatatcaaattctttttctggaagagcccatttcaaAGTGAAAAGA
TTCGCActtaaacattcaaaaaattctcattttggAACAAAATTCGAACC
GAGGACATTAGTATATCGTCattattcttgtttttttttacatacaCAGT
GGAGTTTCTTTTAACACAAATCTCTAAAACTCGAATGTCTgattaactcg
aacaagttttaaggTCCCTTCAGCTAACAATACCTTTTAAACCATACTGC
ATAACTTGGAATTTCCTTAACTCCAATAGATTtatgttccccgtgcgtgt
gtttgaattatggagactccattgtacttgcttttctttttggtttcttt
tacTCCAAATTTAGAGTCTCCTCAAGGAGCAAGACTAAGAAAGTTTATAA
TAAACCTATAGTTTTTGGTCTATAGTTTAAGTGAACACttttttacaaaa
caaaaaaatcttctcGCACGTTCTAATATAAtattgtttgtaaaaaatat
attgcATTAGAtaatttaaaatctaaaaataatctaaaaagaaaggtttt
aaataaaaacttccACGGAACTTTTGAGCTAAAAAACATAACCATATATA
TACTTAATACTAACGGTAAGATAACCCTGATATGCCACAGCTTGAGTAGG
CTGtatgcatccccaaattagttttcatatatctttgaaagaaccaacca
atcagaaaccAGCAATCACAAAATCGAACATTGGCAGTCGAAAAGATAac
tatcaaaacttatcagaggggatgtgtgcagcctacaGCTTGAGCGAGCT
TGATTTGACTGTCCCTTGCAGAAAATAAGAATCTTTTTGCGGAGTTTGTT
TTGGTCGTAAAAACActtgtaaaaacttcacaatGTGTCCGGGAAAAACG
GAACAGATTTTAAACAAGGTATTCTGAAAAAAAGGGGAAGAGTCATTAAA
ATCCATATAAATACTGAGGATTTATTAANGGAAAAACGGAACAGATTTTA
AACAAGGTATTCTGAAAAAAAGGGGAACAGTCATTAAAATCCATATAAAT
ACTGAGGATTTCAAAACCCTCTTATAGAATAGGGTTTGGATAGAAACTGG
CGATATAAAAATAATATACGCACATCCGCACACAGggttaaaattttgta
aatacacTTTAAAAGCATGCCCCCGGTACACTTAGTGGTTTGAACCAAAT
TCAGAAAAAGTAATTTTCGTTctttacaataaaaaaattctctacaaaaa
aagcaacaaaaattcCATATAAACTACGTctgcaaaaatctttttttttg
gttaattacatttttttatacagTAACGAATGCGACGGATTCGTGTCAAA
TGTCTtctctaatttttttcaagcGAACGATTAATAATCATAGAACGAAC
aatattctgaatttttaaATTCAGAATATTTTGTGATGAACAATTTATCT
acgacattttttttcaaaaaataataagaatatcttaaaaTATTACAGTC
AAAATTATTTACATGTTGAGCATAAAAGCAGCAAGTATCACATTGttaat
tatatttgaaaagttaGTGACtgagaaaaatatcaaagtgtCTATTACTC
GGTTAGTTGATTATTTCTCCTTGTCCATAAAATCGTTGACCAGTAATTCA
TCAACCATTCCGTACTTAAATTTGAGAATCCACCCATTAATCAACAAACT
ATATTTGTCTTTAAACCCTCTTGTCCAAGATGCTTGATTCTTACACATCA
GCTGTTTCTTAATTGTACCAGTATTCAAGTAATATGCAAAAACTATTTGG
ATCTTTTTACACCCTTTACATTGCAAATGTTCAAGATTTCCTTAACATCG
ACAACGTAAGATGATCAGTGATTTCCATCAAACCTCAATGACGGTCAATC
GAACTCAATGACGGTCAATCGAACTCAACGGTCACTTGGCATCGGTTCAT
TGATTGGTATTTGATGTAAAACCTCGTCCAATAACTGAAGAGCTCTATGT
AAATGCACCTCGATCCAGCATGGCGTTTGTTTAATTGATTGTCTAGGATA
ATCGGGTCCCCACCCTTTAATGAAGCTTAACCGTAAGAGACAAAGACGAC
GTAAATCGTCCACCCCGATTGAAGCCGATGAGTGACTCATGCTATACGCT
GGTCCGGCACCACCCGCTACCGCAGCCACTTGGGCGGCAGCCGCAGCCTG
GGCTGCTTGAGCTTGTTGTTTCATTTGGTCGTAACACATACGTAAATCAA
ATACCTTGATGTAAGCCTGAGGGTAGATCTTGTGGACGGCATCACCCGGA
GAACGCCCGGCTTGTCGGTCAAGATAATAGCTTTGTACGAAAACACTTTG
TTCGCTTAAACATCTTACCCATATGTCACCTTCTCCTCGACGATCAAGCT
GAATACCACGCC
Run BLAST on NCBI

protein sequence of TCONS_00056562-protein

>TCONS_00056562-protein ID=TCONS_00056562-protein|Name=TCONS_00056562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MIWSQILATLFLWMVHFEDLVAAISCGKMRKIPENNHGVEPMVLVDHEEV
IELKTKRVIPVLSPEWSFQVKFNISANHTTTDDYCSIVHVAHNSQLYGKR
TPALFYQRVNKELLVDSAVNGNNKYRNRYGIMLNTEYNVEIRQRYKSGGV
YKYSIFLNGDEVHSTDNTQAQQFYDVTVYISNPWVFPCIGVVSELKMTNF
L
Run BLAST on NCBI

transcript from alignment at scaffold_277:61152..68584+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056562 ID=TCONS_00056562|Name=TCONS_00056562|organism=Clytia hemisphaerica|type=transcript|length=7433bp|location=Sequence derived from alignment at scaffold_277:61152..68584+ (Clytia hemisphaerica)
CTTATGAAAATTTTGCTTCCGTTACGGAGCGAGGCCTCTGGGACAAAAAC
TAACTTAATACAATTTTCTGTTTACAGATAAGAAATCTTTAACAATCGTT
GTATGTTTGAATATGATTTGGTCTCAAATACTTGCAACTTTATTTCTATG
GATGGTTCATTTTGAAGATTTGGTGGCTGCCATCTCTTGTGGCAAAATGA
GAAAGGTATCGataagaaattattttattggGATCGGGTCCGGTTTGAAG
GGTCGCTGGTTGAATTCTTAACCAGTTTCCATTTTACTATTCACACtaaa
cacccctgtttcagtgccccggtagaactttttccctcagtggggatgaa
aatttctatcaaaatgccaatgaggatagaaaatctattgtttccagctc
gaaaattccagtggGGATGGTTTTGGAGTGCAATTTTTTACATTCAGTTT
TCAGTGGGGATAAAGTCATAGAGCAACTTCGcagtggggttgaaattgta
tgatattttttccaccgggacgattttttggcctatttttccaccggggt
ggggggtccaccgggtctgtgacacagtggTGTCACTAAAAAGTGGTAAC
GAACTTGTCCCCAGTTGGTTGAGAATTCAACCAGCGATCCCTTAAACCAG
ACCTGATTTCTTTATTGCCCTTTTAGGCACTTAATGAACAGGAACCAAGa
accatttttgaatttttccaaaagTGAGCGATTGAGTGAATGAGTATAAT
AAGCATCTTCAAATGAGTCCTTGAGCTTGATCAACTGAACAATTCATTgc
taattttaaacattttcagaTTCCAGAGAATAATCACGGCGTTGAACCAA
TGGTACTAGTTGATCACGGTAAGATTTAATGTAGAGTGTTGAATGGTGAA
AAGGAATgcagaaaagaaattttggcgggaattcaaTTTGGTGGATAATT
TCAATAACCAAGTCTTGTAATAGAAGTCATTGGAAATTTGCTAGACAATG
CTTCGTTTTCTTCATTTACCGTCAATGGcaagaaaaatattcttaaatag
ccgaaaattataaataatttggcagatggctaAACAACTAAAATTTGGCA
GTTGAAGgataatttttgccaaaaaacgcTAAACAAATAATAAATGTGTT
AAGACCTGAAATAGCAAACATTAGGGAATGAATAAAATAACTTAAATTTA
Acgggggatttaatttggcgtttgatggaaaaaaaataattttggcggga
acttaattttatTTCCTCCAAAATTGCTTTCCAAAAAATACTATCAAACT
CTCGCAATAGTCCAGTAGAACTTCATGGAAAAATAGGCTCAacctagaaa
aaaaaattataaaaggtttctatataccgttggaaagacaATTTTATCAG
CTTTGGAATGCGAATCCTCTTGTTCTGTATTTGACTGTTCTGGGTTTGTT
CGATTGTACTATTTGAATTTTGTGAGATTATTTAGCTTCTCTACAATCAG
AATTCTTCCTTTGAAGTTCATCTTTTTCTTAATTTGTatatagattttca
aaaatcaaaagttcagTAGGTTCctttgggacgagatggagtttttacca
ATGATTTATCCGcgcggcctttatcgaaaagtgaagcaagttttggtagg
attttctaccaaagaaatcacgtgacaacaagcaatttcattggtttgag
agatgcgataTAGCGTTTGCCGCGGCCTACtatttttgatctcgcgctcc
gaaaacaattaaaatagtAGATCCTATCTATCGgcagtcaaatttttgct
tcacttttttttgtttaaaatgtgttttctgactgatgtaaccaacaaaa
ctatggcatgttatacattttatgttagataaactattcctgaatctgaa
aatgcaaaagttgcattgaaaaaatttgatgaagaagaaaatgtgtttat
ttgcttcaaaatcttgaaaatagtgctttttgaccaattttccatcccaa
tttttcatagaaaaacagccataacttttgtaGCCTGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataaa
cgggcccccccgcttgttaatttttcgaaaattttccaacccccccggac
cttattaggacccccccgtttattaatctctaagaatattttgagctgtc
aaagagaaggcccattattttgctctaaatagcctgattttagcctattt
ttaccttatttttgggtttcagaagaacaatttccaacccccccggcaat
taggtcccccccgtttattaaaatctaaaattttttccaacccccccgtt
tattcgaacccccccgtttatttggaacctaagagtaattgtaaaatttg
gtatacatgctgctactaggattatattaaaagtcaaaaactttcagagt
gttaaaataaattttcagtgagctattagcaaaagagtgccagcctggtg
gaaaacaccccccccctgataaaaatagggttaagggatttgattaaaaa
gcgaTTTatgaggcaattctttgttaaaagtgttaaagaacctaaaacat
aacttttatgttcaaaaactgaaatcaatttcccgactatggtcagagcc
cttaaaaattaaacatctgAGGAAATAGTCCTCCcacggaaaattctaca
acaagaatcttgttgtgcgccggaaagtcaaaaactacaTTTTCCTGATA
TGGCGCCCTATTTCAAAACACAACTTTAACACAAcccaactttgttgtca
ttcccagtccttttagacgagtgtggtccttacgattttgaggTAGCAAA
TTGGTCAGATTGTTTAAAAACCCattcctttagagcttcagtgtggcggg
cagaaaacaatcacaatctgatctcaggtcaCCTAAAGCTGAATTTACTC
TTTTTCTAGAAGAAGTAATCGAACTAAAGACCAAGAGAGTGATACCCGTT
TTATCACCTGAATGGAGTTTCCAAGTGAAATTTAACATCAGTGCAAATCA
CACAACAACTGATGATTACTGTAGTATCGTGCATGTTGCTCACAACTCAC
AGCTATATGGTAAAAGAACGCCAGCATTATTTTACCAAAGAGTGAACAAA
GAATTACTGGTCGATTCAGCTGTAAATGGTAATAATAAGTATCGAAATAG
ATATGGTATTATGCTGAACACAGAATACAATGTAGAGATTCGGCAGCGTT
ACAAAAGTGGAGGTGTTTACAAATATTCCATCTTTCTCAATGGAGATGAA
GTCCATTCAACCGATAATACACAAGCTCAACAATTTTATGATGTTACGGT
TTATATTTCTAACCCCTGGGTATTTCCATGTATTGGGGTTGTATCAGAAC
TTAAAATGACCAACTTTTTGTAACTGAACCACCATGTGTCGTGAGCACTT
CCAGAAAATACTTGTTTTGGGGACAAAATTGCTCTAAGTAGGGGTGATTT
TGTACACTCcatatcaaattctttttctggaagagcccatttcaaAGTGA
AAAGATTCGCActtaaacattcaaaaaattctcattttggAACAAAATTC
GAACCGAGGACATTAGTATATCGTCattattcttgtttttttttacatac
aCAGTGGAGTTTCTTTTAACACAAATCTCTAAAACTCGAATGTCTgatta
actcgaacaagttttaaggTCCCTTCAGCTAACAATACCTTTTAAACCAT
ACTGCATAACTTGGAATTTCCTTAACTCCAATAGATTtatgttccccgtg
cgtgtgtttgaattatggagactccattgtacttgcttttctttttggtt
tcttttacTCCAAATTTAGAGTCTCCTCAAGGAGCAAGACTAAGAAAGTT
TATAATAAACCTATAGTTTTTGGTCTATAGTTTAAGTGAACACtttttta
caaaacaaaaaaatcttctcGCACGTTCTAATATAAtattgtttgtaaaa
aatatattgcATTAGAtaatttaaaatctaaaaataatctaaaaagaaag
gttttaaataaaaacttccACGGAACTTTTGAGCTAAAAAACATAACCAT
ATATATACTTAATACTAACGGTAAGATAACCCTGATATGCCACAGCTTGA
GTAGGCTGtatgcatccccaaattagttttcatatatctttgaaagaacc
aaccaatcagaaaccAGCAATCACAAAATCGAACATTGGCAGTCGAAAAG
ATAactatcaaaacttatcagaggggatgtgtgcagcctacaGCTTGAGC
GAGCTTGATTTGACTGTCCCTTGCAGAAAATAAGAATCTTTTTGCGGAGT
TTGTTTTGGTCGTAAAAACActtgtaaaaacttcacaatGTGTCCGGGAA
AAACGGAACAGATTTTAAACAAGGTATTCTGAAAAAAAGGGGAAGAGTCA
TTAAAATCCATATAAATACTGAGGATTTATTAANGGAAAAACGGAACAGA
TTTTAAACAAGGTATTCTGAAAAAAAGGGGAACAGTCATTAAAATCCATA
TAAATACTGAGGATTTCAAAACCCTCTTATAGAATAGGGTTTGGATAGAA
ACTGGCGATATAAAAATAATATACGCACATCCGCACACAGggttaaaatt
ttgtaaatacacTTTAAAAGCATGCCCCCGGTACACTTAGTGGTTTGAAC
CAAATTCAGAAAAAGTAATTTTCGTTctttacaataaaaaaattctctac
aaaaaaagcaacaaaaattcCATATAAACTACGTctgcaaaaatcttttt
ttttggttaattacatttttttatacagTAACGAATGCGACGGATTCGTG
TCAAATGTCTtctctaatttttttcaagcGAACGATTAATAATCATAGAA
CGAACaatattctgaatttttaaATTCAGAATATTTTGTGATGAACAATT
TATCTacgacattttttttcaaaaaataataagaatatcttaaaaTATTA
CAGTCAAAATTATTTACATGTTGAGCATAAAAGCAGCAAGTATCACATTG
ttaattatatttgaaaagttaGTGACtgagaaaaatatcaaagtgtCTAT
TACTCGGTTAGTTGATTATTTCTCCTTGTCCATAAAATCGTTGACCAGTA
ATTCATCAACCATTCCGTACTTAAATTTGAGAATCCACCCATTAATCAAC
AAACTATATTTGTCTTTAAACCCTCTTGTCCAAGATGCTTGATTCTTACA
CATCAGCTGTTTCTTAATTGTACCAGTATTCAAGTAATATGCAAAAACTA
TTTGGATCTTTTTACACCCTTTACATTGCAATTGTTCAAGATTTTTNAAG
TAATATGCAAAAGCTATTTGGATCTTTTTACACCCTTTACATTGCAAATG
TTCAAGATTTCCTTAACATCGACAACGTAAGATGATCAGTGATTTCCATC
AAACCTCAATGACGGTCAATCGAACTCAATGACGGTCAATCGAACTCAAC
GGTCACTTGGCATCGGTTCATTGATTGGTATTTGATGTAAAACCTCGTCC
AATAACTGAAGAGCTCTATGTAAATGCACCTCGATCCAGCATGGCGTTTG
TTTAATTGATTGTCTAGGATAATCGGGTCCCCACCCTTTAATGAAGCTTA
ACCGTAAGAGACAAAGACGACGTAAATCGTCCACCCCGATTGAAGCCGAT
GAGTGACTCATGCTATACGCTGGTCCGGCACCACCCGCTACCGCAGCCAC
TTGGGCGGCAGCCGCAGCCTGGGCTGCTTGAGCTTGTTGTTTCATTTGGT
CGTAACACATACGTAAATCAAATACCTTGATGTAAGCCTGAGGGTAGATC
TTGTGGACGGCATCACCCGGAGAACGCCCGGCTTGTCGGTCAAGATAATA
GCTTTGTACGAAAACACTTTGTTCGCTTAAACATCTTACCCATATGTCAC
CTTCTCCTCGACGATCAAGCTGAATACCACGCC

Coding sequence (CDS) from alignment at scaffold_277:61152..68584+

>TCONS_00056562 ID=TCONS_00056562|Name=TCONS_00056562|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_277:61152..68584+ (Clytia hemisphaerica)
ATGATTTGGTCTCAAATACTTGCAACTTTATTTCTATGGATGGTTCATTT
TGAAGATTTGGTGGCTGCCATCTCTTGTGGCAAAATGAGAAAGaTTCCAG
AGAATAATCACGGCGTTGAACCAATGGTACTAGTTGATCACGAAGAAGTA
ATCGAACTAAAGACCAAGAGAGTGATACCCGTTTTATCACCTGAATGGAG
TTTCCAAGTGAAATTTAACATCAGTGCAAATCACACAACAACTGATGATT
ACTGTAGTATCGTGCATGTTGCTCACAACTCACAGCTATATGGTAAAAGA
ACGCCAGCATTATTTTACCAAAGAGTGAACAAAGAATTACTGGTCGATTC
AGCTGTAAATGGTAATAATAAGTATCGAAATAGATATGGTATTATGCTGA
ACACAGAATACAATGTAGAGATTCGGCAGCGTTACAAAAGTGGAGGTGTT
TACAAATATTCCATCTTTCTCAATGGAGATGAAGTCCATTCAACCGATAA
TACACAAGCTCAACAATTTTATGATGTTACGGTTTATATTTCTAACCCCT
GGGTATTTCCATGTATTGGGGTTGTATCAGAACTTAAAATGACCAACTTT
TTGTAAATGATTTGGTCTCAAATACTTGCAACTTTATTTCTATGGATGGT
TCATTTTGAAGATTTGGTGGCTGCCATCTCTTGTGGCAAAATGAGAAAGa
TTCCAGAGAATAATCACGGCGTTGAACCAATGGTACTAGTTGATCACGAA
GAAGTAATCGAACTAAAGACCAAGAGAGTGATACCCGTTTTATCACCTGA
ATGGAGTTTCCAAGTGAAATTTAACATCAGTGCAAATCACACAACAACTG
ATGATTACTGTAGTATCGTGCATGTTGCTCACAACTCACAGCTATATGGT
AAAAGAACGCCAGCATTATTTTACCAAAGAGTGAACAAAGAATTACTGGT
CGATTCAGCTGTAAATGGTAATAATAAGTATCGAAATAGATATGGTATTA
TGCTGAACACAGAATACAATGTAGAGATTCGGCAGCGTTACAAAAGTGGA
GGTGTTTACAAATATTCCATCTTTCTCAATGGAGATGAAGTCCATTCAAC
CGATAATACACAAGCTCAACAATTTTATGATGTTACGGTTTATATTTCTA
ACCCCTGGGTATTTCCATGTATTGGGGTTGTATCAGAACTTAAAATGACC
AACTTTTTGTAAATGATTTGGTCTCAAATACTTGCAACTTTATTTCTATG
GATGGTTCATTTTGAAGATTTGGTGGCTGCCATCTCTTGTGGCAAAATGA
GAAAGaTTCCAGAGAATAATCACGGCGTTGAACCAATGGTACTAGTTGAT
CACGAAGAAGTAATCGAACTAAAGACCAAGAGAGTGATACCCGTTTTATC
ACCTGAATGGAGTTTCCAAGTGAAATTTAACATCAGTGCAAATCACACAA
CAACTGATGATTACTGTAGTATCGTGCATGTTGCTCACAACTCACAGCTA
TATGGTAAAAGAACGCCAGCATTATTTTACCAAAGAGTGAACAAAGAATT
ACTGGTCGATTCAGCTGTAAATGGTAATAATAAGTATCGAAATAGATATG
GTATTATGCTGAACACAGAATACAATGTAGAGATTCGGCAGCGTTACAAA
AGTGGAGGTGTTTACAAATATTCCATCTTTCTCAATGGAGATGAAGTCCA
TTCAACCGATAATACACAAGCTCAACAATTTTATGATGTTACGGTTTATA
TTTCTAACCCCTGGGTATTTCCATGTATTGGGGTTGTATCAGAACTTAAA
ATGACCAACTTTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035642XLOC_035642Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056562-proteinTCONS_00056562-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056562-exon-scaffold_277-1491911889:61152..61356TCONS_00056562-exon-scaffold_277-1491911889:61152..61356Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1510915933:61152..61356TCONS_00056562-exon-scaffold_277-1510915933:61152..61356Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1575043694:61152..61356TCONS_00056562-exon-scaffold_277-1575043694:61152..61356Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1491911889:61971..62019TCONS_00056562-exon-scaffold_277-1491911889:61971..62019Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1510915933:61971..62019TCONS_00056562-exon-scaffold_277-1510915933:61971..62019Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1575043694:61971..62019TCONS_00056562-exon-scaffold_277-1575043694:61971..62019Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1491911889:65561..67925TCONS_00056562-exon-scaffold_277-1491911889:65561..67925Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1510915933:65561..67925TCONS_00056562-exon-scaffold_277-1510915933:65561..67925Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1575043694:65561..67925TCONS_00056562-exon-scaffold_277-1575043694:65561..67925Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1491911889:67992..68584TCONS_00056562-exon-scaffold_277-1491911889:67992..68584Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1510915933:67992..68584TCONS_00056562-exon-scaffold_277-1510915933:67992..68584Clytia hemisphaericaexon
TCONS_00056562-exon-scaffold_277-1575043694:67992..68584TCONS_00056562-exon-scaffold_277-1575043694:67992..68584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:61152..68584 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0207835	0.0405948	0.0295944	1.00862	0.743909	3.42885	3.80651	3.30159	2.65914	2.30927	2.32916	2.14401	1.70436	1.82089	0.906934	0.18915	0.391227	3.21311	3.63746	0.739253	0.658384	0.451617	0.98427	0.889277	1.10964	0.174494	0.0817188	0	0.0510149
Blast
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BLAST of TCONS_00056562 vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.770e-52
Identity = 121/169 (71.60%), Postives = 142/169 (84.02%), Query Frame = -3 
Query: 2731 RGIQLDRRGEGDIWVRCLSEQSVFVQSYYLDRQAGRSPGDAVHKIYPQAYIKVFDLRMCYDQMKXXXXXXXXXXXXXXXXXXXX---------XGPAYSMSHSSASIGVDDXXXXXXXXLSFIKGWGPDYPRQSIKQTPCWIEVHLHRALQLLDEVLHQIPINEPMPSD 3210
            +G+QL+ +GEGD+WVRCLS+ +VFVQSYYLDR+AGR+PGDAVHKIYP AYIKVFDLR C+ QM+QQA  AQAAAAAQ AAVAG            PA S+S ++A IGVDDLRRLC+LR+SF+KGWGPDYPRQSIK+TPCWIE+HLHRALQLLDEVLH +PI +P P D
Sbjct:  385 KGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLS-AAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD 552
The following BLAST results are available for this feature:
BLAST of TCONS_00056562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMAD43.770e-5271.60Mothers against decapentaplegic homolog 4 OS=Homo ... [more]
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