TCONS_00056560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056560
Unique NameTCONS_00056560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056560 ID=TCONS_00056560|Name=TCONS_00056560|organism=Clytia hemisphaerica|type=transcript|length=415bp
AAGCAGCTGATTCTATTAAATAATAAAGAGTGTCACATGACTAAACAATG
GAGCAAGCCGATGCTGATTGGTTCAAAAAGCGTCACTCCACTTCATGGAT
ATGCATTGTGTATGCATTTGCTATTGGAATGGAATATTCATGCATTTCGA
CATCTCTCTTATATTATCTGAAAGAAGATTTAAAATTGGAAAATCCTAAA
CTATGGTATAGTGTTATTATGTCATTAACAGCTGCGTCAGCATCGATTAA
TGCCGTCATTAGCGGTAAACTATTTGATAAGACCAGAAGATTGAAATTAT
TCATGTTAATTTTTACAATGGTTACTTTAGTTGGTAATCTCTTGTATACG
TTACAAATTTCAGTTTGGTTTTTGGCTGTTGGTAGATTTTTTTGTGGTTT
ATGTGATGCTGCTCA
Run BLAST on NCBI

protein sequence of TCONS_00056560-protein

>TCONS_00056560-protein ID=TCONS_00056560-protein|Name=TCONS_00056560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MEQADADWFKKRHSTSWICIVYAFAIGMEYSCISTSLLYYLKEDLKLENP
KLWYSVIMSLTAASASINAVISGKLFDKTRRLKLFMLIFTMVTLVGNLLY
TLQISVWFLAVGRFFCGLCDAA
Run BLAST on NCBI

transcript from alignment at scaffold_276:798343..798757

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056560 ID=TCONS_00056560|Name=TCONS_00056560|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_276:798343..798757 (Clytia hemisphaerica)
TGAGCAGCATCACATAAACCACAAAAAAATCTACCAACAGCCAAAAACCA
AACTGAAATTTGTAACGTATACAAGAGATTACCAACTAAAGTAACCATTG
TAAAAATTAACATGAATAATTTCAATCTTCTGGTCTTATCAAATAGTTTA
CCGCTAATGACGGCATTAATCGATGCTGACGCAGCTGTTAATGACATAAT
AACACTATACCATAGTTTAGGATTTTCCAATTTTAAATCTTCTTTCAGAT
AATATAAGAGAGATGTCGAAATGCATGAATATTCCATTCCAATAGCAAAT
GCATACACAATGCATATCCATGAAGTGGAGTGACGCTTTTTGAACCAATC
AGCATCGGCTTGCTCCATTGTTTAGTCATGTGACACTCTTTATTATTTAA
TAGAATCAGCTGCTT

Coding sequence (CDS) from alignment at scaffold_276:798343..798757

>TCONS_00056560 ID=TCONS_00056560|Name=TCONS_00056560|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_276:798343..798757 (Clytia hemisphaerica)
AGCAGCATCACATAAACCACAAAAAAATCTACCAACAGCCAAAAACCAAA
CTGAAATTTGTAACGTATACAAGAGATTACCAACTAAAGTAACCATTGTA
AAAATTAACATGAATAATTTCAATCTTCTGGTCTTATCAAATAGTTTACC
GCTAATGACGGCATTAATCGATGCTGACGCAGCTGTTAATGACATAATAA
CACTATACCATAGTTTAGGATTTTCCAATTTTAAATCTTCTTTCAGATAA
TATAAGAGAGATGTCGAAATGCATGAATATTCCATTCCAATAGCAAATGC
ATACACAATGCATATCCATGAAGTGGAGTGACGCTTTTTGAACCAATCAG
CATCGGCTTGCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035640XLOC_035640Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056560-proteinTCONS_00056560-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056560-exon-scaffold_276-1491911889:798343..798757TCONS_00056560-exon-scaffold_276-1491911889:798343..798757Clytia hemisphaericaexon
TCONS_00056560-exon-scaffold_276-1510915933:798343..798757TCONS_00056560-exon-scaffold_276-1510915933:798343..798757Clytia hemisphaericaexon
TCONS_00056560-exon-scaffold_276-1575043694:798343..798757TCONS_00056560-exon-scaffold_276-1575043694:798343..798757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:798343..798757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.167944	0.194999	0	0.232251	0.183528	0.221419	0.207289	0	0	0	0	3.43618	2.49796	1.36911	1.67916	0.258573	0.397543	4.94305	3.06521	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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