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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056551 ID=TCONS_00056551|Name=TCONS_00056551|organism=Clytia hemisphaerica|type=transcript|length=1299bp
AGGATAAAGGATCTCCAAACCAACCTGAAACCAACTTTTTAACTGTCCCA
CTGAGCAATAATTCTATTCTAAATTGAAAATAGGTATACCAAAAAAGCTT
CAATATGGTTGAGATTCTGGATATTTCAAGCTGGTTTGGTGAGGTGAAAC
GGATGAACAAGAGACAACTGTTCTATCAAATCCTTAATTTTGGAATGATA
GTATCATCTGCTCTCATGATTTGGAAGGGTCTAATGGTTGTTACAGGAAG
TGAAAGTCCTATTGTTGTGGTTTTGAGCGGTAGCATGGAGCCTGCTTTTT
ACAGAGGTGATCTGCTGTTCCTTACCAATGATAATGAAAAGCCAATCCGT
GCTGGAgaaattgttgtttttaaaattgaaggAAGAGAAATCCCTATTGT
CCATCGTGTTATCAAGGTTCATGAGAAAGAAAATGGTTATGTCAAGTTTT
TAACCAAAGGCGATAACAACAATGTTGATGACCGTGGTTTGTATGCACCT
GGTCAACTCTGGTTGGAAAAGAAAGATGTTGTTGGACGTGCAAATGGTTT
TCTTCCGTATGTTGGAATTGTTACTATTCTTATGAATGACTATCCCAAAA
TAAAGTATCTGATCTTGGCAGCACTgggtttctttgttttgattcatAGG
GAATAGGTATTATTATTGTATTTCAATTTTAGGAAATCACGGTTATTTAA
TTTCGAAAAAGTAAATTGACAAGTGAAATACTTTTCTTCTGAGTTGGGGA
AATTCTTGCTAATTTTGGAAAACTATTGATTTAAGAATCATCAATTACCC
AATGGGCTATGATACACTTTAAGAATTTCTACAAAGGTTTTTGAATAAAG
TTGATACATAAGTTTTTAATGCATTAGAGCTgccatatttttatttttac
tctaGAGAAGACGTGATTTTATTAGGACATAAAAGCtctctatttttgaa
aatagtggGCAGTGCTTTTCTATTTTGGAAAACTTGATATGATTGCATTT
TATCAGGACCTCAATTTCTTAATAAAAGGTTCGGATTAAGTCTGGGTACA
CATACATTTTTACAAGAAATAGTAGTTGCAaagttatgaaattttttagt
tttatttaatATTATGCCTTGTTGCCTTATTTCTAACTAGCTTTTTGATC
ATTATTTGTAACTTACAAATTGATAATAACATCTTTTTGGTGAAGGAATA
GCTGCTTTCTTTTTTTGAACCAGAACCACCAACAGTGGAgagagatggag
tttttacaagctcttgtttgatttggttggtcgttaaccagtaataaaa Run BLAST on NCBI protein sequence of TCONS_00056551-protein >TCONS_00056551-protein ID=TCONS_00056551-protein|Name=TCONS_00056551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MVEILDISSWFGEVKRMNKRQLFYQILNFGMIVSSALMIWKGLMVVTGSE
SPIVVVLSGSMEPAFYRGDLLFLTNDNEKPIRAGEIVVFKIEGREIPIVH
RVIKVHEKENGYVKFLTKGDNNNVDDRGLYAPGQLWLEKKDVVGRANGFL
PYVGIVTILMNDYPKIKYLILAALGFFVLIHRE Run BLAST on NCBI transcript from alignment at scaffold_276:495704..497002 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056551 ID=TCONS_00056551|Name=TCONS_00056551|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at scaffold_276:495704..497002 (Clytia hemisphaerica)
ttttattactggttaacgaccaaccaaatcaaacaagagcttgtaaaaac
tccatctctcTCCACTGTTGGTGGTTCTGGTTCAAAAAAAGAAAGCAGCT
ATTCCTTCACCAAAAAGATGTTATTATCAATTTGTAAGTTACAAATAATG
ATCAAAAAGCTAGTTAGAAATAAGGCAACAAGGCATAATattaaataaaa
ctaaaaaatttcataacttTGCAACTACTATTTCTTGTAAAAATGTATGT
GTACCCAGACTTAATCCGAACCTTTTATTAAGAAATTGAGGTCCTGATAA
AATGCAATCATATCAAGTTTTCCAAAATAGAAAAGCACTGCccactattt
tcaaaaatagagaGCTTTTATGTCCTAATAAAATCACGTCTTCTCtagag
taaaaataaaaatatggcAGCTCTAATGCATTAAAAACTTATGTATCAAC
TTTATTCAAAAACCTTTGTAGAAATTCTTAAAGTGTATCATAGCCCATTG
GGTAATTGATGATTCTTAAATCAATAGTTTTCCAAAATTAGCAAGAATTT
CCCCAACTCAGAAGAAAAGTATTTCACTTGTCAATTTACTTTTTCGAAAT
TAAATAACCGTGATTTCCTAAAATTGAAATACAATAATAATACCTATTCC
CTatgaatcaaaacaaagaaacccAGTGCTGCCAAGATCAGATACTTTAT
TTTGGGATAGTCATTCATAAGAATAGTAACAATTCCAACATACGGAAGAA
AACCATTTGCACGTCCAACAACATCTTTCTTTTCCAACCAGAGTTGACCA
GGTGCATACAAACCACGGTCATCAACATTGTTGTTATCGCCTTTGGTTAA
AAACTTGACATAACCATTTTCTTTCTCATGAACCTTGATAACACGATGGA
CAATAGGGATTTCTCTTccttcaattttaaaaacaacaatttcTCCAGCA
CGGATTGGCTTTTCATTATCATTGGTAAGGAACAGCAGATCACCTCTGTA
AAAAGCAGGCTCCATGCTACCGCTCAAAACCACAACAATAGGACTTTCAC
TTCCTGTAACAACCATTAGACCCTTCCAAATCATGAGAGCAGATGATACT
ATCATTCCAAAATTAAGGATTTGATAGAACAGTTGTCTCTTGTTCATCCG
TTTCACCTCACCAAACCAGCTTGAAATATCCAGAATCTCAACCATATTGA
AGCTTTTTTGGTATACCTATTTTCAATTTAGAATAGAATTATTGCTCAGT
GGGACAGTTAAAAAGTTGGTTTCAGGTTGGTTTGGAGATCCTTTATCCT Coding sequence (CDS) from alignment at scaffold_276:495704..497002 >TCONS_00056551 ID=TCONS_00056551|Name=TCONS_00056551|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_276:495704..497002 (Clytia hemisphaerica)
CTATTCCCTatgaatcaaaacaaagaaacccAGTGCTGCCAAGATCAGAT
ACTTTATTTTGGGATAGTCATTCATAAGAATAGTAACAATTCCAACATAC
GGAAGAAAACCATTTGCACGTCCAACAACATCTTTCTTTTCCAACCAGAG
TTGACCAGGTGCATACAAACCACGGTCATCAACATTGTTGTTATCGCCTT
TGGTTAAAAACTTGACATAACCATTTTCTTTCTCATGAACCTTGATAACA
CGATGGACAATAGGGATTTCTCTTccttcaattttaaaaacaacaatttc
TCCAGCACGGATTGGCTTTTCATTATCATTGGTAAGGAACAGCAGATCAC
CTCTGTAAAAAGCAGGCTCCATGCTACCGCTCAAAACCACAACAATAGGA
CTTTCACTTCCTGTAACAACCATTAGACCCTTCCAAATCATGAGAGCAGA
TGATACTATCATTCCAAAATTAAGGATTTGATAGAACAGTTGTCTCTTGT
TCATCCGTTTCACCTCACCAAACCAGCTTGAAATATCCAGAATCTCAACC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056551-exon-scaffold_276-1491911889:495704..497002 | TCONS_00056551-exon-scaffold_276-1491911889:495704..497002 | Clytia hemisphaerica | exon |
| TCONS_00056551-exon-scaffold_276-1510915933:495704..497002 | TCONS_00056551-exon-scaffold_276-1510915933:495704..497002 | Clytia hemisphaerica | exon |
| TCONS_00056551-exon-scaffold_276-1575043694:495704..497002 | TCONS_00056551-exon-scaffold_276-1575043694:495704..497002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:495704..497002 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008233 | peptidase activity |
| GO:0008236 | serine-type peptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006465 | signal peptide processing |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006465 |
signal peptide processing |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008233 |
peptidase activity |
| molecular_function |
GO:0008236 |
serine-type peptidase activity |
Blast
BLAST of TCONS_00056551 vs. Swiss-Prot (Human)
Match: SC11C (Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3) HSP 1 Score: 292.738 bits (748), Expect = 5.695e-97 Identity = 140/173 (80.92%), Postives = 158/173 (91.33%), Query Frame = 3
Query: 135 FGEVKRMNKRQLFYQILNFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFYRGDLLFLTNDNEKPIRAGEIVVFKIEGREIPIVHRVIKVHEKENGYVKFLTKGDNNNVDDRGLYAPGQLWLEKKDVVGRANGFLPYVGIVTILMNDYPKIKYLILAALGFFVLIHRE 653
FG++K+MNKRQL+YQ+LNF MIVSSALMIWKGL+V+TGSESPIVVVLSGSMEPAF+RGDLLFLTN E PIRAGEIVVFK+EGR+IPIVHRVIKVHEK+NG +KFLTKGDNN VDDRGLY GQ WLEKKDVVGRA GFLPYVG+VTI+MNDYPK KY +LA +G +VL+ RE
Sbjct: 19 FGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191
The following BLAST results are available for this feature:
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