TCONS_00056548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056548
Unique NameTCONS_00056548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056548 ID=TCONS_00056548|Name=TCONS_00056548|organism=Clytia hemisphaerica|type=transcript|length=405bp
TAAATGTAAATCAAACACCTCTGTCTCAGTGAGCCGGTGACTCAATCATC
GTAATCTGGTCAGATTTTAAggtctcaaaatttttcgcaggAGAATCAGC
AGAAGCTCTTAGgataataaagaataaaaaattaaaggaaGCATTTTACG
TGACTGCTCTTGATGTGGTACATAATATAATTAATGATTGGGGTTTGACC
ATAAAGTTCCAGATTCATCATTGAGATCATTTTCGGCAATTATTTTCACT
AGCATAACAAGGGGGGCAGATATGGCCGgatcactgatacaggggtgtag
tTTGACTTGAGAGGACATACTgctcattttttttgtaagcataacgttta
tcaGCGTAACGAAAGGCTCAAACTCGGTGAAAATTAGGCAAAATGCTGAG
CATAC
Run BLAST on NCBI

transcript from alignment at scaffold_276:448490..448894

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056548 ID=TCONS_00056548|Name=TCONS_00056548|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at scaffold_276:448490..448894 (Clytia hemisphaerica)
GTATGCTCAGCATTTTGCCTAATTTTCACCGAGTTTGAGCCTTTCGTTAC
GCtgataaacgttatgcttacaaaaaaaatgagcAGTATGTCCTCTCAAG
TCAAactacacccctgtatcagtgatcCGGCCATATCTGCCCCCCTTGTT
ATGCTAGTGAAAATAATTGCCGAAAATGATCTCAATGATGAATCTGGAAC
TTTATGGTCAAACCCCAATCATTAATTATATTATGTACCACATCAAGAGC
AGTCACGTAAAATGCttcctttaattttttattctttattatcCTAAGAG
CTTCTGCTGATTCTcctgcgaaaaattttgagaccTTAAAATCTGACCAG
ATTACGATGATTGAGTCACCGGCTCACTGAGACAGAGGTGTTTGATTTAC
ATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035628XLOC_035628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056548-exon-scaffold_276-1491911889:448490..448894TCONS_00056548-exon-scaffold_276-1491911889:448490..448894Clytia hemisphaericaexon
TCONS_00056548-exon-scaffold_276-1510915933:448490..448894TCONS_00056548-exon-scaffold_276-1510915933:448490..448894Clytia hemisphaericaexon
TCONS_00056548-exon-scaffold_276-1575043694:448490..448894TCONS_00056548-exon-scaffold_276-1575043694:448490..448894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:448490..448894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.176512	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6.6076	5.20335	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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